BAC Information

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BAC

Clone NameB6Ng01-111M20
Chromosome11 (Build37)
Map Location 58,252,195 - 58,389,043
singlet/doubletdoublet
Overlap geneOTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1
Upstream geneLOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik
Downstream geneOlfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111M20.bB6Ng01-111M20.g
ACCDH918046DH918047
length1,2081,087
definitionDH918046|Mus musculus domesticus DNA, BAC clone: B6Ng01-111M20, 5' end.DH918047|Mus musculus domesticus DNA, BAC clone: B6Ng01-111M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,387,817 - 58,389,043)(58,252,195 - 58,253,303)
sequence
gaattctgttttaacatgttcttaaatcacagaaaaataatgaacctcaa
atctccaagcccagggaacttctgtcagcacagtcaacttgaggcactca
ccgctgagcagtccttcctacggtcacatgacgctaacccaaaagcattc
ttggttgctgaggagacactcataggtatcaccacctaaatgagcaacta
cactacacagtcagatctcaccctagcgggactcttcagtcaatccaaac
accctgccctgcttactgtggtcatatttgtgcttttcctgatggccttg
tctgggaacgccctcctgatcctgctgatactctctgacacccacctcca
cacacccatgtacttttttatcagccagctgtccctcatggacatgatgt
acatttctgtcactgtgcccaagatgctcatggaccaggtcctggggagc
cacaagatctcagctgctgcctgtgggatgcagatgtttctctacctgac
actagcagggtcagaatttttccctctggctgccatgtcttatgactact
ccatggctacagttgcagtcaggtgtttaagaatacactgagagccaaca
taaacatttatttttctgttaaagctgtcatttagtctaggcaggagttc
ctaggtctattggccttttttctttcttttttctttttgtaaccagttgt
gccatctgttggggataggtcagggttttctttggaagcattgagagcgt
gtccctcctcgttgactctcttctttgtagaatgtacacggattggcgcc
cacactggggagcctcagtggcctcatttgtacagaggacagtgactcag
tagaaccatggggatcttttaaaagatgcgtcacagtccctgagaaccta
gatgatgttgaaggactagagtaagcatcattgccccttaatccctctgt
ctacgtcagtataggcctccaagtacggttaatcaataccaagcacctgt
ctggtactgtttgatatattttatgttcaatactgtttagaggagaaaca
cccctttttgcttattaattcggccttttaggttcagagaaagacagcac
cttagagactcctaacgattcatcgatgcctgttggactgggaacttaat
tttgattactctttatgtactttaaggctacttcttacatactctacgta
agttactc
gaattctataaaatcattcatttatctaatcagcattaattcataaaagt
tcatcttcatgttgatctgcaggaaatttgcccaatagggtaggtggatg
cccagggattgttagactatgtagtagtgataggagaggcatagcaacag
gaagaagcaatttagggatgaagtttcttggtccttgtctctcagagctc
acctatcacagaccatacaaaacaaaacaaacaaaaaccaaaccaaaaca
aagcaaaacaaaatggtgagccaagttcataaaagtcatctgctagcctt
agcctttcctaggtggctcctgacagggcccatctgcccttgagacagga
acttgggaaagagctgtaggagttttctttttggaatgcacagtcagagg
gaggggctgacaactttttcctgaacaatatatggaaaactgcatggaac
catagactcagtggctttttgggagctgattaagtggtggactgggagtt
tgttgggacttgaggcaagccacacttttattaagaaagagttctgacag
acaagaagtcctggggcaagcaagggaagggccctttgtccagatgagtt
gatgtgaatgaggaaaatagggcatcacagaattcaaaagatgattcaaa
ccatctacagtggggcaggcttctacctcagcttaccttgggaaagagat
gtcctgtgcattctatagttattctcagagggaactcaaagcccccagaa
ggatgtcagtttgtgagagatccacaatatttccctccaggtggggaagg
agagaaagggtagagtggggaaggcaagttacacctgaagggttttagcc
aacagttgagaccctgcatctagccttcatcctcacctggcatcaaactc
acctgttctgctgaatggtacccagaggctcactgtagtctgtgtctgaa
accaggtcatttaaaggtcctctttcagagagtcagtagggccagagaca
gaggccactctacatggatgagcagtgcctatgacctcacatgaggtgga
gatgaggttcctgatcctctctggaagttactctaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_58387817_58389043
seq2: B6Ng01-111M20.b_48_1255 (reverse)

seq1  GAGTAACTTACGTAGAGTATGT-AGAAGATAAGCCTTAAAGATCATTAAG  49
      |||||||||||||||||||||| |||||   ||||||||||  ||| |||
seq2  GAGTAACTTACGTAGAGTATGTAAGAAG--TAGCCTTAAAGTACATAAAG  48

seq1  AGATGTTAATCAAAAATTTAAGGTCCAAGTTCAACCAAGCATCGATTGAA  99
      ||    |||||||||  ||||| ||| ||| ||| || ||||||||   |
seq2  AG----TAATCAAAA--TTAAGTTCCCAGTCCAA-CAGGCATCGAT--GA  89

seq1  ATCGTTA-GAGTCCTCTAAAGTGCCTGGTCTTCTCTTGGAAACCCCTATA  148
      ||||||| |||| |||||| ||||   ||||| |||  |||   |||| |
seq2  ATCGTTAGGAGT-CTCTAAGGTGC--TGTCTT-TCTCTGAA---CCTA-A  131

seq1  AGGGCCGATTTAATAAGCAAAAGGGGGTGTTTCTCCTCTAAAACAGTATT  198
      | |||||| ||||||||||||| |||||||||||||||| |||||||| |
seq2  AAGGCCGAATTAATAAGCAAAAAGGGGTGTTTCTCCTCT-AAACAGTA-T  179

seq1  TGAACATACAATATATCAAACAGTACCAGACAGGTGCTGGGTATTGATTA  248
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  TGAACATAAAATATATCAAACAGTACCAGACAGGTGCTTGGTATTGATTA  229

seq1  ACCGTACTTGGAGGCCTATACTGACGTAGACAGAGGGATTAAAGGGGCAA  298
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACCGTACTTGGAGGCCTATACTGACGTAGACAGAGGGATT-AAGGGGCAA  278

seq1  TGATGCTTACTCTAGTCCTTCAACATCATCTAGGTTCTCAGGGACTGTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTTACTCTAGTCCTTCAACATCATCTAGGTTCTCAGGGACTGTGA  328

seq1  CGCATCTTTTAAAAGAT-CCCATGGTTCTACTGAGTCACTGTCCTCTTGT  397
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  CGCATCTTTTAAAAGATCCCCATGGTTCTACTGAGTCACTGTCCTC-TGT  377

seq1  AC-AATGAGGCCACTGAGGCTCCCCAGTGTGGGCGCCAATCCGTGTACAT  446
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGAGGCCACTGAGGCTCCCCAGTGTGGGCGCCAATCCGTGTACAT  427

seq1  TCTACAAAGAAGAGAGTCAACGAGGAGGGACACGCTCTCAATGCTTCCAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAGAAGAGAGTCAACGAGGAGGGACACGCTCTCAATGCTTCCAA  477

seq1  AGAAAACCCTGACCTATCCCCAACAGATGGCACAACTGGTTACAAAAAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCCTGACCTATCCCCAACAGATGGCACAACTGGTTACAAAAAGA  527

seq1  AAAAAGAAAGAAAAAAGGCCAATAGACCTAGGAACTCCTGCCTAGACTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAGAAAAAAGGCCAATAGACCTAGGAACTCCTGCCTAGACTAA  577

seq1  ATGACAGCTTTAACAGAAAAATAAATGTTTATGTTGGCTCTCAGTGTATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGCTTTAACAGAAAAATAAATGTTTATGTTGGCTCTCAGTGTATT  627

seq1  CTTAAACACCTGACTGCAACTGTAGCCATGGAGTAGTCATAAGACATGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACACCTGACTGCAACTGTAGCCATGGAGTAGTCATAAGACATGGC  677

seq1  AGCCAGAGGGAAAAATTCTGACCCTGCTAGTGTCAGGTAGAGAAACATCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGGGAAAAATTCTGACCCTGCTAGTGTCAGGTAGAGAAACATCT  727

seq1  GCATCCCACAGGCAGCAGCTGAGATCTTGTGGCTCCCCAGGACCTGGTCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCACAGGCAGCAGCTGAGATCTTGTGGCTCCCCAGGACCTGGTCC  777

seq1  ATGAGCATCTTGGGCACAGTGACAGAAATGTACATCATGTCCATGAGGGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCATCTTGGGCACAGTGACAGAAATGTACATCATGTCCATGAGGGA  827

seq1  CAGCTGGCTGATAAAAAAGTACATGGGTGTGTGGAGGTGGGTGTCAGAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGCTGATAAAAAAGTACATGGGTGTGTGGAGGTGGGTGTCAGAGA  877

seq1  GTATCAGCAGGATCAGGAGGGCGTTCCCAGACAAGGCCATCAGGAAAAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGCAGGATCAGGAGGGCGTTCCCAGACAAGGCCATCAGGAAAAGC  927

seq1  ACAAATATGACCACAGTAAGCAGGGCAGGGTGTTTGGATTGACTGAAGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATGACCACAGTAAGCAGGGCAGGGTGTTTGGATTGACTGAAGAG  977

seq1  TCCCGCTAGGGTGAGATCTGACTGTGTAGTGTAGTTGCTCATTTAGGTGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCTAGGGTGAGATCTGACTGTGTAGTGTAGTTGCTCATTTAGGTGG  1027

seq1  TGATACCTATGAGTGTCTCCTCAGCAACCAAGAATGCTTTTGGGTTAGCG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCTATGAGTGTCTCCTCAGCAACCAAGAATGCTTTTGGGTTAGCG  1077

seq1  TCATGTGACCGTAGGAAGGACTGCTCAGCGGTGAGTGCCTCAAGTTGACT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGACCGTAGGAAGGACTGCTCAGCGGTGAGTGCCTCAAGTTGACT  1127

seq1  GTGCTGACAGAAGTTCCCTGGGCTTGGAGATTTGAGGTTCATTATTTTTC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGACAGAAGTTCCCTGGGCTTGGAGATTTGAGGTTCATTATTTTTC  1177

seq1  TGTGATTTAAGAACATGTTAAAACAGAATTC  1227
      |||||||||||||||||||||||||||||||
seq2  TGTGATTTAAGAACATGTTAAAACAGAATTC  1208

seq1: chr11_58252195_58253303
seq2: B6Ng01-111M20.g_69_1155

seq1  GAATTCTATAAAATCATTCATTTATCTAATCAGCATTAATTCATAAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAAAATCATTCATTTATCTAATCAGCATTAATTCATAAAAGT  50

seq1  TCATCTTCATGTTGATCTGCAGGAAATTTGCCCAATAGGGTAGGTGGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCATGTTGATCTGCAGGAAATTTGCCCAATAGGGTAGGTGGATG  100

seq1  CCCAGGGATTGTTAGACTATGTAGTAGTGATAGGAGAGGCATAGCAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGATTGTTAGACTATGTAGTAGTGATAGGAGAGGCATAGCAACAG  150

seq1  GAAGAAGCAATTTAGGGATGAAGTTTCTTGGTCCTTGTCTCTCAGAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGCAATTTAGGGATGAAGTTTCTTGGTCCTTGTCTCTCAGAGCTC  200

seq1  ACCTATCACAGACCATACAAAACAAAACAAACAAAAACCAAACCAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATCACAGACCATACAAAACAAAACAAACAAAAACCAAACCAAAACA  250

seq1  AAGCAAAACAAAATGGTGAGCCAAGTTCATAAAAGTCATCTGCTAGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAACAAAATGGTGAGCCAAGTTCATAAAAGTCATCTGCTAGCCTT  300

seq1  AGCCTTTCCTAGGTGGCTCCTGACAGGGCCCATCTGCCCTTGAGACAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCCTAGGTGGCTCCTGACAGGGCCCATCTGCCCTTGAGACAGGA  350

seq1  ACTTGGGAAAGAGCTGTAGGAGTTTTCTTTTTGGAATGCACAGTCAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAAAGAGCTGTAGGAGTTTTCTTTTTGGAATGCACAGTCAGAGG  400

seq1  GAGGGGCTGACAACTTTTTCCTGAACAATATATGGAAAACTGCATGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCTGACAACTTTTTCCTGAACAATATATGGAAAACTGCATGGAAC  450

seq1  CATAGACTCAGTGGCTTTTTGGGAGCTGATTAAGTGGTGGACTGGGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACTCAGTGGCTTTTTGGGAGCTGATTAAGTGGTGGACTGGGAGTT  500

seq1  TGTTGGGACTTGAGGCAAGCCACACTTTTATTAAGAAAGAGTTCTGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGACTTGAGGCAAGCCACACTTTTATTAAGAAAGAGTTCTGACAG  550

seq1  ACAAGAAGTCCTGGGGCAAGCAAGGGAAGGGCCCTTTGTCCAGATGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGTCCTGGGGCAAGCAAGGGAAGGGCCCTTTGTCCAGATGAGTT  600

seq1  GATGTGAATGAGGAAAATAGGGCATCACAGAATTCAAAAGATGATTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAATGAGGAAAATAGGGCATCACAGAATTCAAAAGATGATTCAAA  650

seq1  CCATCTACAGTGGGGCAGGCTTCTACCTCAGCTTACCTTGGGAAAGAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTACAGTGGGGCAGGCTTCTACCTCAGCTTACCTTGGGAAAGAGAT  700

seq1  GTCCTGTGCATTCTATAGTTATTCTCAGAGGGAACTCAAAGCCCCCAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTGCATTCTATAGTTATTCTCAGAGGGAACTCAAAGCCCCCAGAA  750

seq1  GGATGTCAGTTTGTGAGAGATCCACAATATTTCCCTCCAGGTGGGGAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCAGTTTGTGAGAGATCCACAATATTTCCCTCCAGGTGGGGAAGG  800

seq1  AGAGAAAGGGTAGAGTGGGGAAGGCAAGTTACACCTGAAGGGTTTTAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGGGTAGAGTGGGGAAGGCAAGTTACACCTGAAGGGTTTTAGCC  850

seq1  AACAGTTGAGACCCTGCATCTAGCCTTCATCCTCACCT-GCATCAAACTC  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AACAGTTGAGACCCTGCATCTAGCCTTCATCCTCACCTGGCATCAAACTC  900

seq1  ACCTGTCCTGCTGAATGGGTACCCAGAGGCCTCACTGTTAGTCTTGTGTC  949
      |||||| ||||||||| |||||||||||| ||||||| ||||| ||||||
seq2  ACCTGTTCTGCTGAAT-GGTACCCAGAGG-CTCACTG-TAGTC-TGTGTC  946

seq1  TGAGACACAAGGGTCATTTTAAGGTTCCTTCTATACAGAAGAGTCAGTAG  999
      ||| || ||  |||||||| |||||  | ||| | ||| |||||||||||
seq2  TGAAAC-CA--GGTCATTTAAAGGT--CCTCT-TTCAG-AGAGTCAGTAG  989

seq1  GGCCAGAGGACAAGAAGGCCCAGCTTCTACATGGATGGAGCAGTGCTCAT  1049
      ||||||| ||||   |||||     ||||||||||| |||||||||  ||
seq2  GGCCAGA-GACA--GAGGCC---ACTCTACATGGAT-GAGCAGTGCCTAT  1032

seq1  GACCTCACACAGAGGTGGGAGTGGTGGATTCTGGACCATTCTGGAAGTTT  1099
      |||||||||  ||||| ||||  | || | |||  ||  |||||||| ||
seq2  GACCTCACA-TGAGGT-GGAGATGAGGTTCCTGATCCTCTCTGGAAG-TT  1079

seq1  ACTTTCTAAG  1109
      ||  ||||||
seq2  AC--TCTAAG  1087