BAC Information

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BAC

Clone NameB6Ng01-112G03
Chromosome11 (Build37)
Map Location 96,956,000 - 97,096,900
singlet/doubletdoublet
Overlap geneTbx21, Tbkbp1, Kpnb1, Npepps
Upstream geneNdp52, Ttll6, Hoxb13, LOC432593, LOC100039639, Gm53, Hoxb9, Hoxb8, Hoxb7, Hoxb6, Hoxb5, Hoxb4, Hoxb3, Hoxb2, Hoxb1, LOC100040242, OTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7
Downstream geneEG665490, Mrpl45, Gpr179, Socs7, 4933428G20Rik, P140, 2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112G03.bB6Ng01-112G03.g
ACCDH918463DH918464
length1,0111,081
definitionDH918463|Mus musculus domesticus DNA, BAC clone: B6Ng01-112G03, 5' end.DH918464|Mus musculus domesticus DNA, BAC clone: B6Ng01-112G03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,095,883 - 97,096,900)(96,956,000 - 96,957,072)
sequence
gaattcagacattagcctgcctctggcgttctgggtgtgtaggtattgtt
gggaataaaatcatgtacagccactgctggctaagagctgtcctgagaca
ccaccaccaggcagagagagccaaaggagaataaaagtctgcccctatta
acacacctcctccaaaagccacaactcctaacccttctaaaacagttgtg
cctactgggaatcaaggtttcaaacacaggagcctatgggaaccattctc
ataagagcacactgtcaagataaataaataaggcaccacattgagaaagc
aaaagaaggcaattttactcttagataaaacttaatgggcttcagaagga
tgcatgcttttcagcatatctgatattttaggaattgagtacatttagtt
ttgataaatgtgtgtatctgctataaattctgagatctgactcactttta
cttaaaattgtatttttttaggactttaagaaaggaatgaatatgtattt
aaccaagttccaacaaaagaatgctgccacaggtaatctttacgttttta
atttttttttatgatttatttatattatatatttgagtacactgtctgca
ttcacatacaccagaaggagtcattgagtcccattacggatggttatgag
ccaccatgtggttgctgggaattgaactcaggacctctggaagatcagtc
agtgctcttagctgctgagcccctcgttttagtttttccctacccccttg
cctcctttcccctttttgtcatgctaagggtcagtcgagaactttatgca
tacaatgctctactggactaagctgcatcctagcctcaaggtcgtgttca
gtaacttgaagtagaaatacagataaaggctctgagtttgatttcctagt
acagaccatgagtgctggagataaaatgtcgtctacatttacgatgactc
ctcagacgtgttcatgaagacatgtctgcaccttgagctcaaagcctagt
gttactgtgtt
gaattcctcatgctgtggtgagaactgccccccccacacaaaatcatctt
gttgcttcatgactataactttgaattgcaatgtaatcatcagtgctttg
gaaggggggtcgagacccacaggttgagaacccctggtttaacatcgatg
agactggaaatgtagctctctggtggagtgcctgcctagcacacctgagg
ccctgggtttgagcctcagtaacatccacccacatgcacatacccactcc
cagcctgccacaggacttcaaaccaacatgtgccattcaatattcagaac
acagaagatgaaagaaacacctaaatttaaagtggatgatcatgaatcaa
aatagcatcataattccaaagagagatggtatcgactaaaacatagtgga
gaaatgccttaggagtttgtggtgtggagctagataggtcagtgggttaa
agcactggttgctcttctggagagtcctaggttcaattcccaacacccac
atggtggctcacaaccctctgaaattccagtctcagggcatctgacaccc
tcttctgacctctgtgggcatcaggcactctacccaagtgtacagccata
gatgcaggcaaaacactaatccgtataaaaatgagcaagtaaatgaatac
aaaagaatttaatgcactggaaagatggcttagtggttaagagcactggt
tgctcctgcagagggcccaggttcaattcccagcatccacatagtggctc
acaactatctataactctagctcaaaaaacctttcttaaccttacagcgt
tcctttcaaagactattttttttcttttctttttttttaaaatatttatt
tatttatttattatatgtaagtatactgtagctgtcttcagacactccag
aggagagcatcagattttgtcatggatggttgtgagccaccatgttgttt
gctgggatttgaactcaggacctttgggaagagcagccggtgcctctaac
cgcctgagccatctcctccagcccttatttttttttcttttcttcctttc
aaggtgtgttctgtgcaaagaaaaagttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_97095883_97096900
seq2: B6Ng01-112G03.b_46_1056 (reverse)

seq1  AACACAGTAAACACTAGGCTTTGTAGCTCAAAGTGCAGACCATGTCTTCA  50
      |||||||| |||||||||||||| ||||||| ||||||| ||||||||||
seq2  AACACAGT-AACACTAGGCTTTG-AGCTCAAGGTGCAGA-CATGTCTTCA  47

seq1  TGCACCACGTCTGAGGAGTCATCGTAAATGTAGAACGACATTTTATCTCC  100
      || | |||||||||||||||||||||||||||| ||||||||||||||||
seq2  TG-AACACGTCTGAGGAGTCATCGTAAATGTAG-ACGACATTTTATCTCC  95

seq1  AGCACCTCATGGTCTGGTACTAGGAAATCAAACTCAGAGCCTTTATCTGT  150
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCA-CTCATGGTCT-GTACTAGGAAATCAAACTCAGAGCCTTTATCTGT  143

seq1  ATTTCTACTTCAAGTTACTGAACACGACCTTTGAGGCTAGGATGCAGCTT  200
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTTCTACTTCAAGTTACTGAACACGACC-TTGAGGCTAGGATGCAGCTT  192

seq1  AGTCCAGTAGAGCATTGTATGCATAAAGTTCTCGACTGACCCTTAGCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGTAGAGCATTGTATGCATAAAGTTCTCGACTGACCCTTAGCATG  242

seq1  ACAAAAAGGGG-AAGGAGGCAAGGGGGTAGGGAAAAACTAAAACGAGGGG  299
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGGGGAAAGGAGGCAAGGGGGTAGGGAAAAACTAAAACGAGGGG  292

seq1  CTCAGCAGCTAAGAGCACTGACTGATCTTCCAGAGGTCCTGAGTTCAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGCTAAGAGCACTGACTGATCTTCCAGAGGTCCTGAGTTCAATT  342

seq1  CCCAGCAACCACATGGTGGCTCATAACCATCCGTAATGGGACTCAATGAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAACCACATGGTGGCTCATAACCATCCGTAATGGGACTCAATGAC  392

seq1  TCCTTCTGGTGTATGTGAATGCAGACAGTGTACTCAAATATATAATATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTGGTGTATGTGAATGCAGACAGTGTACTCAAATATATAATATAA  442

seq1  ATAAATCATAAAAAAAAATTAAAAACGTAAAGATTACCTGTGGCAGCATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCATAAAAAAAAATTAAAAACGTAAAGATTACCTGTGGCAGCATT  492

seq1  CTTTTGTTGGAACTTGGTTAAATACATATTCATTCCTTTCTTAAAGTCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTGGAACTTGGTTAAATACATATTCATTCCTTTCTTAAAGTCCT  542

seq1  AAAAAAATACAATTTTAAGTAAAAGTGAGTCAGATCTCAGAATTTATAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATACAATTTTAAGTAAAAGTGAGTCAGATCTCAGAATTTATAGC  592

seq1  AGATACACACATTTATCAAAACTAAATGTACTCAATTCCTAAAATATCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACACACATTTATCAAAACTAAATGTACTCAATTCCTAAAATATCAG  642

seq1  ATATGCTGAAAAGCATGCATCCTTCTGAAGCCCATTAAGTTTTATCTAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTGAAAAGCATGCATCCTTCTGAAGCCCATTAAGTTTTATCTAAG  692

seq1  AGTAAAATTGCCTTCTTTTGCTTTCTCAATGTGGTGCCTTATTTATTTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATTGCCTTCTTTTGCTTTCTCAATGTGGTGCCTTATTTATTTAT  742

seq1  CTTGACAGTGTGCTCTTATGAGAATGGTTCCCATAGGCTCCTGTGTTTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACAGTGTGCTCTTATGAGAATGGTTCCCATAGGCTCCTGTGTTTGA  792

seq1  AACCTTGATTCCCAGTAGGCACAACTGTTTTAGAAGGGTTAGGAGTTGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGATTCCCAGTAGGCACAACTGTTTTAGAAGGGTTAGGAGTTGTG  842

seq1  GCTTTTGGAGGAGGTGTGTTAATAGGGGCAGACTTTTATTCTCCTTTGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGGAGGAGGTGTGTTAATAGGGGCAGACTTTTATTCTCCTTTGGC  892

seq1  TCTCTCTGCCTGGTGGTGGTGTCTCAGGACAGCTCTTAGCCAGCAGTGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGCCTGGTGGTGGTGTCTCAGGACAGCTCTTAGCCAGCAGTGGC  942

seq1  TGTACATGATTTTATTCCCAACAATACCTACACACCCAGAACGCCAGAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGATTTTATTCCCAACAATACCTACACACCCAGAACGCCAGAGG  992

seq1  CAGGCTAATGTCTGAATTC  1018
      |||||||||||||||||||
seq2  CAGGCTAATGTCTGAATTC  1011

seq1: chr11_96956000_96957072
seq2: B6Ng01-112G03.g_66_1146

seq1  GAATTCCTCATGCTGTGGTGAGAACTGCCCCCCCCACACAAAATCATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATGCTGTGGTGAGAACTGCCCCCCCCACACAAAATCATCTT  50

seq1  GTTGCTTCATGACTATAACTTTGAATTGCAATGTAATCATCAGTGCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTCATGACTATAACTTTGAATTGCAATGTAATCATCAGTGCTTTG  100

seq1  GAAGGGGGGTCGAGACCCACAGGTTGAGAACCCCTGGTTTAACATCGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGGGTCGAGACCCACAGGTTGAGAACCCCTGGTTTAACATCGATG  150

seq1  AGACTGGAAATGTAGCTCTCTGGTGGAGTGCCTGCCTAGCACACCTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGAAATGTAGCTCTCTGGTGGAGTGCCTGCCTAGCACACCTGAGG  200

seq1  CCCTGGGTTTGAGCCTCAGTAACATCCACCCACATGCACATACCCACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGTTTGAGCCTCAGTAACATCCACCCACATGCACATACCCACTCC  250

seq1  CAGCCTGCCACAGGACTTCAAACCAACATGTGCCATTCAATATTCAGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGCCACAGGACTTCAAACCAACATGTGCCATTCAATATTCAGAAC  300

seq1  ACAGAAGATGAAAGAAACACCTAAATTTAAAGTGGATGATCATGAATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGATGAAAGAAACACCTAAATTTAAAGTGGATGATCATGAATCAA  350

seq1  AATAGCATCATAATTCCAAAGAGAGATGGTATCGACTAAAACATAGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATCATAATTCCAAAGAGAGATGGTATCGACTAAAACATAGTGGA  400

seq1  GAAATGCCTTAGGAGTTTGTGGTGTGGAGCTAGATAGGTCAGTGGGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCTTAGGAGTTTGTGGTGTGGAGCTAGATAGGTCAGTGGGTTAA  450

seq1  AGCACTGGTTGCTCTTCTGGAGAGTCCTAGGTTCAATTCCCAACACCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGTTGCTCTTCTGGAGAGTCCTAGGTTCAATTCCCAACACCCAC  500

seq1  ATGGTGGCTCACAACCCTCTGAAATTCCAGTCTCAGGGCATCTGACACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGCTCACAACCCTCTGAAATTCCAGTCTCAGGGCATCTGACACCC  550

seq1  TCTTCTGACCTCTGTGGGCATCAGGCACTCTACCCAAGTGTACAGCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGACCTCTGTGGGCATCAGGCACTCTACCCAAGTGTACAGCCATA  600

seq1  GATGCAGGCAAAACACTAATCCGTATAAAAATGAGCAAGTAAATGAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGGCAAAACACTAATCCGTATAAAAATGAGCAAGTAAATGAATAC  650

seq1  AAAAGAATTTAATGCACTGGAAAGATGGCTTAGTGGTTAAGAGCACTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATTTAATGCACTGGAAAGATGGCTTAGTGGTTAAGAGCACTGGT  700

seq1  TGCTCCTGCAGAGGGCCCAGGTTCAATTCCCAGCATCCACATAGTGGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGCAGAGGGCCCAGGTTCAATTCCCAGCATCCACATAGTGGCTC  750

seq1  ACAACTATCTATAACTCTAGCTCAAAAAACCTTTCTTAACCTTACAGCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTATCTATAACTCTAGCTCAAAAAACCTTTCTTAACCTTACAGCGT  800

seq1  TCCTTTCAAAGACTATTTTTTTTCTTTTCTTTTTTTTTAAAATATTTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCAAAGACTATTTTTTTTCTTTTCTTTTTTTTTAAAATATTTATT  850

seq1  TATTTATTTATTATATGTAAGTATACTGTAGCTGTCTTCAGACACTCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTATATGTAAGTATACTGTAGCTGTCTTCAGACACTCCAG  900

seq1  AAGAGAGCATCAGATTTTGTCATGGATGGTTGTGAGCCACCATG-TGGTT  949
      | |||||||||||||||||||||||||||||||||||||||||| || ||
seq2  AGGAGAGCATCAGATTTTGTCATGGATGGTTGTGAGCCACCATGTTGTTT  950

seq1  GCTGGGATTTGAACTCAGGACCTTT-GGAAGAGCAGTCGGTGCTCTTAAC  998
      ||||||||||||||||||||||||| |||||||||| ||||||   ||||
seq2  GCTGGGATTTGAACTCAGGACCTTTGGGAAGAGCAGCCGGTGCCTCTAAC  1000

seq1  CG-CTGAGCCATCT-CTCCAGCCC-TATTTTTTTTTCTTTTCTTCATTTC  1045
      || ||||||||||| ||||||||| |||||||||||||||||||| ||||
seq2  CGCCTGAGCCATCTCCTCCAGCCCTTATTTTTTTTTCTTTTCTTCCTTTC  1050

seq1  -AGGGGTG-TCTGTGCAAAG-AATAGTTCTG  1073
       ||| ||| ||||||||||| || |||||||
seq2  AAGGTGTGTTCTGTGCAAAGAAAAAGTTCTG  1081