BAC Information

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BAC

Clone NameB6Ng01-112H17
Chromosome11 (Build37)
Map Location 100,921,869 - 101,073,176
singlet/doubletdoublet
Overlap geneAtp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1
Upstream geneKrt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf
Downstream geneRamp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112H17.bB6Ng01-112H17.g
ACCDH918534DH918535
length964983
definitionDH918534|Mus musculus domesticus DNA, BAC clone: B6Ng01-112H17, 5' end.DH918535|Mus musculus domesticus DNA, BAC clone: B6Ng01-112H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,072,218 - 101,073,176)(100,921,869 - 100,922,690)
sequence
gaattcaggatctctggaaaagcagtcagttctcttaaccactgagccat
ctctctggcccctttttttgtcatttttttaattggtttttttatttatt
tgcatttcagatgttatcccccttctcaatttcccctccaggagaaaaaa
aaaattgtcttgattaagagaagtcactattgggctggagagatggctca
gcagttaagagcaccaactgctcttccgaaggtcctgagttcaaatccca
gcaactacatggtggctcagaaccacccgtaatgagatctgacaccctct
tctggtgtgtctgaagacagctacagtgttctcacatagaataaataaat
aaatgagaagtcactattgagacattatacagcacaaagccaagtgattt
ttcgcttgattgttattttcctgccttgctgtggttgttggcacactgag
agtatgtctgatccctgcctgtagaccaggctcccctgtcttctgaatgc
tgagattaaaggtttgtgccaccatactgtgtgtgctgttaagatttttg
aacagcaaatccagtgttaccaatgaccacagaactggaatattctaata
agggtaaaggctctagctagttaactgttagtagttgttagggttcatca
aatgatgtggtgttacacctcttacacccctagactgcagggtgagtgct
aaaaaacctaccttatctttttttttttttttgagactggttttcattat
atagcttttgactgtcttagaactcactatatagactgggcctcaaactc
agagattcacaaacctctgtctcccaagtgctggggattaaaggtgtgca
ccactacacctgacaagatactttttttttggttgttgttaaaatggtcc
attaatattttgcctatatgtatgtctgggtaagggtatcgagcccttgg
aactggaatttaca
gaattctttctcagatgtttttgtggttggagaatattttgctttgagaa
gaacccccgctctctccccacccccaacctttccactgtgctttctgggt
tgctccagcgtttagcacaaacacaagaggacagagaaaatgagatgtta
ggacagacagacttatccaggtatcccctcctgccgacttgctgagggtg
ggcctggactctgaggaggtgtcatggtgggcctgtgggaaaggtgcagt
cacagaaagggggaagaggggaccggtgccacacagcttgacctctgacc
tcccctcgtaataaatttgaaatgttatttatttttaagatttatttatt
ttatatatgtgagcacactgttgctgtcttcagacacaccagaagagggc
atcggatctcattacggatggttgtgagccaccatgtggttgctgggcat
tgaactcaggacctctggaagagcagtcagtgctcttaaccgctgagcca
tcccctcagccccccaaaatattatttttaatttaaaagataaaaacaga
ggtcagggagatagcccagtgagtaagtgcttacctcgaaagtccagtga
cccgagttcagtttccagaagcctcgcaaaggtgcgtctcaggattagta
ttgcttctgctgtggtgaaacaacctgacctcagctccatggggaggaga
gggctcattcagcttccacctccacagcattgttcatcttttggagggag
tcagggcaggaactcaagcagggcaggaacctgcaggcaggagctggtgc
agaggccatgactgggtgcagcttactggcttgctcctcatggcttgctc
agcctgctttcttatagatccagggaccaccagcccgcagtaggctggac
cctcccccatcaatcactaattaagataatgccctacaggcttggccaca
gcccagttcttatgcaggcattttcctcggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101072218_101073176
seq2: B6Ng01-112H17.b_44_1007 (reverse)

seq1  TGT-AACTCCAGTTCCAGGGGACTCAATACCCTTACCCAGACATACATAT  49
      ||| || |||||||||| ||| ||| ||||||||||||||||||||||||
seq2  TGTAAATTCCAGTTCCAAGGG-CTCGATACCCTTACCCAGACATACATAT  49

seq1  AGGCAAAATACTAATGGACATTTTAAACAACAAC--AAAAAAAAGTATCT  97
      |||||||||| ||||||||  ||| |||||||||  ||||||||||||||
seq2  AGGCAAAATATTAATGGACCATTTTAACAACAACCAAAAAAAAAGTATCT  99

seq1  TGTCAGGTGTAGTGGTGCACACCTTTAAT-CCCAGCACTTGGGAGGCAGA  146
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  TGTCAGGTGTAGTGGTGCACACCTTTAATCCCCAGCACTTGGGAGACAGA  149

seq1  GGTTTGTGAATCTCTGAGTTTGAGG-CCAGTCTATATAGTGAGTTCTAAG  195
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGTTTGTGAATCTCTGAGTTTGAGGCCCAGTCTATATAGTGAGTTCTAAG  199

seq1  ACAGTC-AAAGCTATATAATGAAAACCAGTCTCAAAAAAAAAAAAAAAGA  244
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAAAAGCTATATAATGAAAACCAGTCTCAAAAAAAAAAAAAAAGA  249

seq1  TAAGGTAGGTTTTTTAGCACTCACCCTGCAGTCTAGGGGTGTAAGAGGTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAGGTTTTTTAGCACTCACCCTGCAGTCTAGGGGTGTAAGAGGTG  299

seq1  TAACACCACATCATTTGATGAACCCTAACAACTACTAACAGTTAACTAGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACCACATCATTTGATGAACCCTAACAACTACTAACAGTTAACTAGC  349

seq1  TAGAGCCTTTACCCTTATTAGAATATTCCAGTTCTGTGGTCATTGGTAAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCTTTACCCTTATTAGAATATTCCAGTTCTGTGGTCATTGGTAAC  399

seq1  ACTGGATTTGCTGTTCAAAAATCTTAACAGCACACACAGTATGGTGGCAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATTTGCTGTTCAAAAATCTTAACAGCACACACAGTATGGTGGCAC  449

seq1  AAACCTTTAATCTCAGCATTCAGAAGACAGGGGAGCCTGGTCTACAGGCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTAATCTCAGCATTCAGAAGACAGGGGAGCCTGGTCTACAGGCA  499

seq1  GGGATCAGACATACTCTCAGTGTGCCAACAACCACAGCAAGGCAGGAAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAGACATACTCTCAGTGTGCCAACAACCACAGCAAGGCAGGAAAA  549

seq1  TAACAATCAAGCGAAAAATCACTTGGCTTTGTGCTGTATAATGTCTCAAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATCAAGCGAAAAATCACTTGGCTTTGTGCTGTATAATGTCTCAAT  599

seq1  AGTGACTTCTCATTTATTTATTTATTCTATGTGAGAACACTGTAGCTGTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTTCTCATTTATTTATTTATTCTATGTGAGAACACTGTAGCTGTC  649

seq1  TTCAGACACACCAGAAGAGGGTGTCAGATCTCATTACGGGTGGTTCTGAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGACACACCAGAAGAGGGTGTCAGATCTCATTACGGGTGGTTCTGAG  699

seq1  CCACCATGTAGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGTAGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTT  749

seq1  GGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCAATAGTGACTTCTCTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCAATAGTGACTTCTCTT  799

seq1  AATCAAGACAATTTTTTTTTTCTCCTGGAGGGGAAATTGAGAAGGGGGAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGACAATTTTTTTTTTCTCCTGGAGGGGAAATTGAGAAGGGGGAT  849

seq1  AACATCTGAAATGCAAATAAATAAAAAAACCAATTAAAAAAATGACAAAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTGAAATGCAAATAAATAAAAAAACCAATTAAAAAAATGACAAAA  899

seq1  AAAGGGGCCAGAGAGATGGCTCAGTGGTTAAGAGAACTGACTGCTTTTCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGCCAGAGAGATGGCTCAGTGGTTAAGAGAACTGACTGCTTTTCC  949

seq1  AGAGATCCTGAATTC  959
      |||||||||||||||
seq2  AGAGATCCTGAATTC  964

seq1: chr11_100921869_100922690
seq2: B6Ng01-112H17.g_67_889

seq1  GAATTCTTTCTCAGATGTTTTTGTGGTTGGAGAATATTTTGCTTTGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCAGATGTTTTTGTGGTTGGAGAATATTTTGCTTTGAGAA  50

seq1  GAACCCCCGCTCTCTCCCCACCCCCAACCTTTCCACTGTGCTTTCTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCCGCTCTCTCCCCACCCCCAACCTTTCCACTGTGCTTTCTGGGT  100

seq1  TGCTCCAGCGTTTAGCACAAACACAAGAGGACAGAGAAAATGAGATGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGCGTTTAGCACAAACACAAGAGGACAGAGAAAATGAGATGTTA  150

seq1  GGACAGACAGACTTATCCAGGTATCCCCTCCTGCCGACTTGCTGAGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGACAGACTTATCCAGGTATCCCCTCCTGCCGACTTGCTGAGGGTG  200

seq1  GGCCTGGACTCTGAGGAGGTGTCATGGTGGGCCTGTGGGAAAGGTGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGACTCTGAGGAGGTGTCATGGTGGGCCTGTGGGAAAGGTGCAGT  250

seq1  CACAGAAAGGGGGAAGAGGGGACCGGTGCCACACAGCTTGACCTCTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAGGGGGAAGAGGGGACCGGTGCCACACAGCTTGACCTCTGACC  300

seq1  TCCCCTCGTAATAAATTTGAAATGTTATTTATTTTTAAGATTTATTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCGTAATAAATTTGAAATGTTATTTATTTTTAAGATTTATTTATT  350

seq1  TTATATATGTGAGCACACTGTTGCTGTCTTCAGACACACCAGAAGAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATGTGAGCACACTGTTGCTGTCTTCAGACACACCAGAAGAGGGC  400

seq1  ATCGGATCTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGATCTCATTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGCAT  450

seq1  TGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCA  500

seq1  TCCCCTCAGCCCCCCAAAATATTATTTTTAATTTAAAAGATAAAAACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCAGCCCCCCAAAATATTATTTTTAATTTAAAAGATAAAAACAGA  550

seq1  GGTCAGGGAGATAGCCCAGTGAGTAAGTGCTTACCTCGAAAGTCCAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGGAGATAGCCCAGTGAGTAAGTGCTTACCTCGAAAGTCCAGTGA  600

seq1  CCCGAGTTCAGTTTCCAGAAGCCTCGCAAAGGTGCGTCTCAGGATTAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGTTCAGTTTCCAGAAGCCTCGCAAAGGTGCGTCTCAGGATTAGTA  650

seq1  TTGCTTCTGCTGTGGTGAAACAACCTGACCTCAGCTCCATGGGGAGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTGCTGTGGTGAAACAACCTGACCTCAGCTCCATGGGGAGGAGA  700

seq1  GGGCTCATTCAGCTTCCACCTCCACAGCATTGTTCATC-ATTGGAGGGAG  749
      ||||||||||||||||||||||||||||||||||||||  ||||||||||
seq2  GGGCTCATTCAGCTTCCACCTCCACAGCATTGTTCATCTTTTGGAGGGAG  750

seq1  TCAGGGCAGGAACTCAAGCAGGGCAGGAACCTGCAGGCAGGAGCTGGTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCAGGAACTCAAGCAGGGCAGGAACCTGCAGGCAGGAGCTGGTGC  800

seq1  AGAGGCCATGACTGGGTGCAGCT  822
      |||||||||||||||||||||||
seq2  AGAGGCCATGACTGGGTGCAGCT  823