BAC Information

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BAC

Clone NameB6Ng01-112N13
Chromosome11 (Build37)
Map Location 76,884,264 - 76,996,393
singlet/doubletdoublet
Overlap geneCcdc55, Efcab5, LOC628108
Upstream geneVps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1, Blmh, Slc6a4
Downstream geneSsh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112N13.bB6Ng01-112N13.g
ACCDH918800DH918801
length8041,178
definitionDH918800|Mus musculus domesticus DNA, BAC clone: B6Ng01-112N13, 5' end.DH918801|Mus musculus domesticus DNA, BAC clone: B6Ng01-112N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,884,264 - 76,885,063)(76,995,213 - 76,996,393)
sequence
gaattccttagagctagagaaccagctagcgtggtatatgtatatgaaaa
acaaagaacttgcctcaaataaagggacaaacaaggacccacagctcatt
tgtcctctgatctccacagaactgggcccttcatcacaacaggactcatg
tgctagtgccccctctgctggaccacgggagataataaagtatgatctaa
aatttgagatctttaattgtttctgatgagctgtcaagtaaacaaaacaa
agctaaagagcaagaggtttgctttgcagcagcttttctcctgctgtagc
taatgctattccagggagggaatccgtaaagtctgcttctacatattctt
taaagcactcctcattttacagctgtttaaagtggttatgaaaaaaagaa
gttttgacattatttagacttcacaaatatttaagtaatctatttaagaa
atgttcattcttagctggaataaaccagacaaatgcttttcatgcaagta
gaccatggggtaggggtggggggcagctttacatcctgttcattaagaat
taacccgttatttcccttgccttggctggtggggaaggtccaccaatgta
agaccaaggttaagagaaaactcgagagctatttctttcatgtcttcctc
cctacctaaaactcaatctccatacttgctttcaaaatcttctagaatct
ggctaatccctagttcccaccaggtaatcctggtccctagtttcctaagc
ccatcatatgcctcccatttctcattgcttgggtcttcctgctgctactc
tctg
gaattccatgcaagagttaaagtaatcaaaggctttgtctggatcactgg
gattagaacttcatctccctctggcaaaagtccaaaatctattgtatgtt
gacaaggccagtggcatacatttgtagcctattcacacagcccatggatg
ctttccagcaacacatcctcctcccagtgcccaccaacttaaagcttttg
gtactcagagatcttcatgaagtttagccctgctttaaaatcctttgacc
tctgtcttacgtttcctcagtccattacagacccctgacaaagtccagtc
actttaggaatgaacaattttttccctttttttcttcatcagaagaaggc
aaaatgattgttggtttgtcaggagttttacaacaccaaaatgacttcga
ttcaaaatttttatctgtctccttcccagaggggaaaaaaaggagattta
ctcatctctgtttcgtgtctcacaacaacaggctgaacagtccttatttc
ttattttatggtagcagccattcccttgaaaaatatagcctctactgtct
gttggttttacatacacaatataatttacagctttttatcaagtgtctga
aaggtagatctagagcccaggtggactttaatcttcaagccttgcatgca
aatttgcaaagccataaagcaggttgggctcacacagctcgctcctcccc
cacttctaatagctttatttttcttgtatcttttccttctgattctgatc
cctctagtacttgggggatttatatgtgaaagtttccacccactgttttg
tgttgtacaaacacatgtgtatgtacaaacatgtagatacacatatacac
acatacacttgataatgaaaaaatagttgcccttaaataagattaccagt
ttttagtagcctgggagttacacatattttgtaagtgtgttagaacttct
aaaactgggcaccacacagtaaatatactgtataacaatttcaactgaga
catttaaataataaaagggaagcttattattattaggatttccgagatta
tttccaataggcaggccttatttcctcatcatctcgacagaaacggatcc
tagacacccagtcccaatgatcaggaaaatagtggtaagagtctgaagtc
gcctgccacgctcaccctgtaaccttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_76884264_76885063
seq2: B6Ng01-112N13.b_48_851

seq1  GAATTCCTTAGAGCTAGAGAACCAGCTAGCGTGGTATATGTATATGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGAGCTAGAGAACCAGCTAGCGTGGTATATGTATATGAAAA  50

seq1  ACAAAGAACTTGCCTCAAATAAAGGGACAAACAAGGACCCACAGCTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAACTTGCCTCAAATAAAGGGACAAACAAGGACCCACAGCTCATT  100

seq1  TGTCCTCTGATCTCCACAGAACTGGGCCCTTCATCACAACAGGACTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCTGATCTCCACAGAACTGGGCCCTTCATCACAACAGGACTCATG  150

seq1  TGCTAGTGCCCCCTCTGCTGGACCACGGGAGATAATAAAGTATGATCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGTGCCCCCTCTGCTGGACCACGGGAGATAATAAAGTATGATCTAA  200

seq1  AATTTGAGATCTTTAATTGTTTCTGATGAGCTGTCAAGTAAACAAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAGATCTTTAATTGTTTCTGATGAGCTGTCAAGTAAACAAAACAA  250

seq1  AGCTAAAGAGCAAGAGGTTTGCTTTGCAGCAGCTTTTCTCCTGCTGTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAGAGCAAGAGGTTTGCTTTGCAGCAGCTTTTCTCCTGCTGTAGC  300

seq1  TAATGCTATTCCAGGGAGGGAATCCGTAAAGTCTGCTTCTACATATTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTATTCCAGGGAGGGAATCCGTAAAGTCTGCTTCTACATATTCTT  350

seq1  TAAAGCACTCCTCATTTTACAGCTGTTTAAAGTGGTTATGAAAAAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCACTCCTCATTTTACAGCTGTTTAAAGTGGTTATGAAAAAAAGAA  400

seq1  GTTTTGACATTATTTAGACTTCACAAATATTTAAGTAATCTATTTAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGACATTATTTAGACTTCACAAATATTTAAGTAATCTATTTAAGAA  450

seq1  ATGTTCATTCTTAGCTGGAATAAACCAGACAAATGCTTTTCATGCAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATTCTTAGCTGGAATAAACCAGACAAATGCTTTTCATGCAAGTA  500

seq1  GACCATGGGGTAGGGGTGGGGGGCAGCTTTACATCCTGTTCATTAAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATGGGGTAGGGGTGGGGGGCAGCTTTACATCCTGTTCATTAAGAAT  550

seq1  TAACCCGTTATTTCCCTTGCCTTGGCTGGTGGGGAAGGTCCACCAATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCGTTATTTCCCTTGCCTTGGCTGGTGGGGAAGGTCCACCAATGTA  600

seq1  AGACCAAGGTTAAGAGAAAACTCGAGAGCTATTTC-TTCATGTCTTCCTC  649
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGACCAAGGTTAAGAGAAAACTCGAGAGCTATTTCTTTCATGTCTTCCTC  650

seq1  CCTACCTAAAACTCAATCTCCATACTTGC-TTCAAAATCTTCTAGAATCT  698
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTACCTAAAACTCAATCTCCATACTTGCTTTCAAAATCTTCTAGAATCT  700

seq1  GGCTAAT-CCTAGTTCCCACCAGGTAATCCTGGTCCCTAGTTTCCTAAGC  747
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATCCCTAGTTCCCACCAGGTAATCCTGGTCCCTAGTTTCCTAAGC  750

seq1  CCATCATATGCCT-CCATTTCTCATTGCTTGGGTCTTCCTGCTGCTACTC  796
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCATCATATGCCTCCCATTTCTCATTGCTTGGGTCTTCCTGCTGCTACTC  800

seq1  TCTG  800
      ||||
seq2  TCTG  804

seq1: chr11_76995213_76996393
seq2: B6Ng01-112N13.g_69_1246 (reverse)

seq1  CTAAGGTTACAGGTGTGAGC--TGCACGCCCGACTCTCAGGACTCTTACA  48
      ||||||||||||| ||||||   ||| |  ||||| ||| ||||||||| 
seq2  CTAAGGTTACAGG-GTGAGCGTGGCAGG--CGACT-TCA-GACTCTTACC  45

seq1  CCTAATTTCCTGATCATTTGGACT-GGTGTCCTAGGAT-CGTTTCTGTCG  96
       ||| ||||||||||||| ||||| ||||| ||||||| |||||||||||
seq2  ACTATTTTCCTGATCATTGGGACTGGGTGT-CTAGGATCCGTTTCTGTCG  94

seq1  AGATTGATTGAGAAATAGGCCCTGCCTATTGGAAATAATCT--GAAATTC  144
      ||| ||||   |||||| | |||||||||||||||||||||  ||||| |
seq2  AGA-TGATGAGGAAATAAGGCCTGCCTATTGGAAATAATCTCGGAAATCC  143

seq1  TAATATTAATAAGCTTCCCTTTTATTATTTAAATGTCTTCAGTTGAAAAT  194
      ||||| ||||||||||||||||||||||||||||||| |||||||||| |
seq2  TAATAATAATAAGCTTCCCTTTTATTATTTAAATGTC-TCAGTTGAAATT  192

seq1  GTTATACAGTATAATTTACTGTGTTGGTGCCCAGTTTTAGAAGTTCTAAC  244
      |||||||||||| |||||||||| ||||||||||||||||||||||||||
seq2  GTTATACAGTAT-ATTTACTGTG-TGGTGCCCAGTTTTAGAAGTTCTAAC  240

seq1  ACACTTAC-AAATATGTGTAACTCCCAGGCTACTAAAAACTGGTAATCTT  293
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTACAAAATATGTGTAACTCCCAGGCTACTAAAAACTGGTAATCTT  290

seq1  ATTTTAAGGGCAACTATTTTTTCATTATCAAGTGTATGTGTGTATATGTG  343
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TTTAAGGGCAACTATTTTTTCATTATCAAGTGTATGTGTGTATATGTG  339

seq1  TATCTACATGTTTGTACATACACATGTGTTTGTACAACACAAAACAGTGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACATGTTTGTACATACACATGTGTTTGTACAACACAAAACAGTGG  389

seq1  GTGGAAACTTTCACATATAAAT-CCCCAAGTACTAGAGGGATCAGAATCA  442
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTGGAAACTTTCACATATAAATCCCCCAAGTACTAGAGGGATCAGAATCA  439

seq1  GAAGGAAAAGATACAAGAAAAATAAAGCTATTAGAAGTGGGGGAGGAGCG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAAGATACAAGAAAAATAAAGCTATTAGAAGTGGGGGAGGAGCG  489

seq1  AGCTGTGTGAGCCCAACCTGCTTTATGGCTTTGCAAATTTGCATGCAAGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTGAGCCCAACCTGCTTTATGGCTTTGCAAATTTGCATGCAAGG  539

seq1  CTTGAAGATTAAAGTCCACCTGGGCTCTAGATCTACCTTTCAGACACTTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGATTAAAGTCCACCTGGGCTCTAGATCTACCTTTCAGACACTTG  589

seq1  ATAAAAAGCTGTAAATTATATTGTGTATGTAAAACCAACAGACAGTAGAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGCTGTAAATTATATTGTGTATGTAAAACCAACAGACAGTAGAG  639

seq1  GCTATATTTTTCAAGGGAATGGCTGCTACCATAAAATAAGAAATAAGGAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATTTTTCAAGGGAATGGCTGCTACCATAAAATAAGAAATAAGGAC  689

seq1  TGTTCAGCCTGTTGTTGTGAGACACGAAACAGAGATGAGTAAATCTCCTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCCTGTTGTTGTGAGACACGAAACAGAGATGAGTAAATCTCCTT  739

seq1  TTTTTCCCCTCTGGGAAGGAGACAGATAAAAATTTTGAATCGAAGTCATT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCCTCTGGGAAGGAGACAGATAAAAATTTTGAATCGAAGTCATT  789

seq1  TTGGTGTTGTAAAACTCCTGACAAACCAACAATCATTTTGCCTTCTTCTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTGTAAAACTCCTGACAAACCAACAATCATTTTGCCTTCTTCTG  839

seq1  ATGAAGAAAAAAAGGGAAAAAATTGTTCATTCCTAAAGTGACTGGACTTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAAAAAAGGGAAAAAATTGTTCATTCCTAAAGTGACTGGACTTT  889

seq1  GTCAGGGGTCTGTAATGGACTGAGGAAACGTAAGACAGAGGTCAAAGGAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGGGTCTGTAATGGACTGAGGAAACGTAAGACAGAGGTCAAAGGAT  939

seq1  TTTAAAGCAGGGCTAAACTTCATGAAGATCTCTGAGTACCAAAAGCTTTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCAGGGCTAAACTTCATGAAGATCTCTGAGTACCAAAAGCTTTA  989

seq1  AGTTGGTGGGCACTGGGAGGAGGATGTGTTGCTGGAAAGCATCCATGGGC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTGGGCACTGGGAGGAGGATGTGTTGCTGGAAAGCATCCATGGGC  1039

seq1  TGTGTGAATAGGCTACAAATGTATGCCACTGGCCTTGTCAACATACAATA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAATAGGCTACAAATGTATGCCACTGGCCTTGTCAACATACAATA  1089

seq1  GATTTTGGACTTTTGCCAGAGGGAGATGAAGTTCTAATCCCAGTGATCCA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGGACTTTTGCCAGAGGGAGATGAAGTTCTAATCCCAGTGATCCA  1139

seq1  GACAAAGCCTTTGATTACTTTAACTCTTGCATGGAATTC  1181
      |||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGCCTTTGATTACTTTAACTCTTGCATGGAATTC  1178