BAC Information

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BAC

Clone NameB6Ng01-113B24
Chromosome11 (Build37)
Map Location 28,974,731 - 29,127,818
singlet/doubletdoublet
Overlap genePnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104
Upstream geneEG626571, Ccdc85a, Efemp1, LOC382504
Downstream geneLOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113B24.bB6Ng01-113B24.g
ACCDH919000DH919001
length1,120789
definitionDH919000|Mus musculus domesticus DNA, BAC clone: B6Ng01-113B24, 5' end.DH919001|Mus musculus domesticus DNA, BAC clone: B6Ng01-113B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,126,723 - 29,127,818)(28,974,731 - 28,975,517)
sequence
gaattctgtataaagttcattttagtcctccactacagcttgtctttatt
actattctattgctgtgaggagacaaccgtgactttataaggcaacttat
aaagaaagcatcaactggggctttgtttacagtctcagagggtgagtcta
tggccatcatggagggagcatggcagcaggcaggcagattggcatagtgc
ccaagcaaaagccgaacttacatcttgtccataggcagcaggcaaggaat
aagactggacctggtgtaggctttcaaaatcccaaagcctaccccaagtg
acatctcctctagtaaagccaccaaatgggaaccaagcattcagagagcc
tatggaggccattattactcaaaccaccacaaagctcctactattctttg
gagttctgacttatctatgttcactctaccaaagaaaactaaacaaatcc
tgtagtttcctgtatgcaaagaaaattaggagatttttcctttcctttta
ttatattgaaatagcaggcatggctttcagcataggcttcattatgaagc
aggatcacagtgcttggtctatatgcgtccgttcagaaccatttctgtaa
gtgcctattctgtgcaagggtagggtaagtgtgactctagcaaaggagac
aaagctcattccgtgctcctgctttctggctctctgcctcaaatttctcc
ctatttctcggaagggaaaaggggaacccaacacaaaccactgaaaagtc
atttccttttttctctgtcccctaaaaccatgacatatccttgtattcca
cagtcttacaaaccctgcctaaccccactgttcctgatgtagagagcatg
caatgctttatagggtgttaagagattataaaattatgagaggacacgat
cttaactttttcatttttatatgcaaattattgtttctttgaatatcata
ctttaggttatgcacagtttgtttttcatttgagaacattatggaaattt
taaagcatgaaaattacataatgctgacataattgaacttccatttattc
ttgtcactcagtaaccagattagaaaatcttgtgaattggctgggcgtgg
atgtcgccaccctttttaat
gaattccactgtgctactccagagcagatgtgagacaaggcaagcttgaa
aaaaaaaaaatcgggattgactagagatcacaacttaagagtcagaagca
ggacatctctgtctcctttaccctgaatcttggaactattggatcagtag
ctggcaactgcaaattaaaaatcataacagctggatgaggtgacacttac
aaaagggccaccccaatagtcaggaataaaaaaatgccagaggaagaaac
acaaggaaatccctcaggacagtatatctggccagtgggtgggtaccggc
attgtgtcatacttggtgcatactagaactgtctttctatgaaataaaat
ttgttttctcattctagaagctatctgctcctgagttttgctccattctt
gatgggctttttcttactaggtgggtgtgagactaatttcctgatctaga
gtaagaaacattccatatttagggtcactgagtcaacaggatgaagaaaa
cggtaaataattttttctctttaccaggaacattttgtttgttaattttg
attttacttatttgtttatctgtttctttattcccttctttatttatcca
cagcatcaattaacctgaaaggccgatcaccagtgagtgtctcttggtag
gagaacagtggcaacctgtcttcattttgtcacttttcaacccctcagtc
tacttagatttattcctcctgatgtttcagcagccaaagtccagtcatcg
ttctcttaaagtgacatcctgggggggggggggattgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_29126723_29127818
seq2: B6Ng01-113B24.b_46_1165 (reverse)

seq1  ATTAAA---GGTGTGCGACA-CCACGCCCAG-CAACTCAC-AGATTTCTA  44
      ||||||   |||| |||||| |||||||||| ||| |||| ||||||   
seq2  ATTAAAAAGGGTG-GCGACATCCACGCCCAGCCAATTCACAAGATTTTCT  49

seq1  AATCTGGTTACTGAGTGACA--GATAATTGG-AGTTC-ATTATGTCAGCA  90
      ||||||||||||||||||||   |||| ||| ||||| ||||||||||||
seq2  AATCTGGTTACTGAGTGACAAGAATAAATGGAAGTTCAATTATGTCAGCA  99

seq1  -TATGT-ATTTTCATGCTTTTAAATTT-CATAATGTTCTCAAATGAAAA-  136
       ||||| ||||||||||||| |||||| ||||||||||||||||||||| 
seq2  TTATGTAATTTTCATGCTTTAAAATTTCCATAATGTTCTCAAATGAAAAA  149

seq1  -CAACTGTGCAT-ACCTAAAGTATGATATTC-AAGAAACAAT-ATTTGCA  182
        |||||||||| |||||||||||||||||| |||||||||| |||||||
seq2  CAAACTGTGCATAACCTAAAGTATGATATTCAAAGAAACAATAATTTGCA  199

seq1  TAT-AAAATG-AAAAGTTAAGATCGTGTCCTCTCATAATTTTATAATCTC  230
      ||| |||||| |||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAATGAAAAAGTTAAGATCGTGTCCTCTCATAATTTTATAATCTC  249

seq1  TTAACACCCTAT-AAGCA-TGCATGCTCTCTACATCAGGAACAGTGGGGT  278
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  TTAACACCCTATAAAGCATTGCATGCTCTCTACATCAGGAACAGTGGGGT  299

seq1  TAGGCA-GGTTTGTAAGACTGTGGAATACAAGGATATGTCATGGTTTTAG  327
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGGGTTTGTAAGACTGTGGAATACAAGGATATGTCATGGTTTTAG  349

seq1  GGGACAGAG-AAAAAGGAAATGACTTTTCAGTGGTTTGTGTTGGGTT-CC  375
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  GGGACAGAGAAAAAAGGAAATGACTTTTCAGTGGTTTGTGTTGGGTTCCC  399

seq1  CTTTTCCCTTCCGAGAAATAGGGAGAAATTTGAGGCAGAGAGCCAGAAAG  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCTTCCGAGAAATAGGGAGAAATTTGAGGCAGAGAGCCAGAAAG  449

seq1  CAGGAGCACGGAATGAGCTTTGTCTCCTTTGCTAGAGTCACACTTACCCT  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCACGGAATGAGCTTTGTCTCCTTTGCTAGAGTCACACTTACCCT  499

seq1  ACCCTTGCACAGAATAGGCACTTACAGAAATGGTTCTGAACGGACGCATA  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGCACAGAATAGGCACTTACAGAAATGGTTCTGAACGGACGCATA  549

seq1  TAGACCAAGCACTGTGATCCTGCTTCATAATGAAGCCTATGCTGAAAGCC  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAAGCACTGTGATCCTGCTTCATAATGAAGCCTATGCTGAAAGCC  599

seq1  ATGCCTGCTATTTCAATATAATAAAAGGAAAGGAAAAATCTCCTAATTTT  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGCTATTTCAATATAATAAAAGGAAAGGAAAAATCTCCTAATTTT  649

seq1  CTTTGCATACAGGAAACTACAGGATTTGTTTAGTTTTCTTTGGTAGAGTG  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCATACAGGAAACTACAGGATTTGTTTAGTTTTCTTTGGTAGAGTG  699

seq1  AACATAGATAAGTCAGAACTCCAAAGAATAGTAGGAGCTTTGTGGTGGTT  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGATAAGTCAGAACTCCAAAGAATAGTAGGAGCTTTGTGGTGGTT  749

seq1  TGAGTAATAATGGCCTCCATAGGCTCTCTGAATGCTTGGTTCCCATTTGG  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAATAATGGCCTCCATAGGCTCTCTGAATGCTTGGTTCCCATTTGG  799

seq1  TGGCTTTACTAGAGGAGATGTCACTTGGGGTAGGCTTTGGGATTTTGAAA  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTACTAGAGGAGATGTCACTTGGGGTAGGCTTTGGGATTTTGAAA  849

seq1  GCCTACACCAGGTCCAGTCTTATTCCTTGCCTGCTGCCTATGGACAAGAT  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACACCAGGTCCAGTCTTATTCCTTGCCTGCTGCCTATGGACAAGAT  899

seq1  GTAAGTTCGGCTTTTGCTTGGGCACTATGCCAATCTGCCTGCCTGCTGCC  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTCGGCTTTTGCTTGGGCACTATGCCAATCTGCCTGCCTGCTGCC  949

seq1  ATGCTCCCTCCATGATGGCCATAGACTCACCCTCTGAGACTGTAAACAAA  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCCTCCATGATGGCCATAGACTCACCCTCTGAGACTGTAAACAAA  999

seq1  GCCCCAGTTGATGCTTTCTTTATAAGTTGCCTTATAAAGTCACGGTTGTC  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGTTGATGCTTTCTTTATAAGTTGCCTTATAAAGTCACGGTTGTC  1049

seq1  TCCTCACAGCAATAGAATAGTAATAAAGACAAGCTGTAGTGGAGGACTAA  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACAGCAATAGAATAGTAATAAAGACAAGCTGTAGTGGAGGACTAA  1099

seq1  AATGAACTTTATACAGAATTC  1096
      |||||||||||||||||||||
seq2  AATGAACTTTATACAGAATTC  1120

seq1: chr11_28974731_28975517
seq2: B6Ng01-113B24.g_69_857

seq1  GAATTCCACTGTGCTACTCCAGAGCAGATGTGAGACAAGGCAAGCTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGTGCTACTCCAGAGCAGATGTGAGACAAGGCAAGCTTGAA  50

seq1  AAAAAAAAAATCGGGATTGACTAGAGATCACAACTTAAGAGTCAGAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATCGGGATTGACTAGAGATCACAACTTAAGAGTCAGAAGCA  100

seq1  GGACATCTCTGTCTCCTTTACCCTGAATCTTGGAACTATTGGATCAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCTCTGTCTCCTTTACCCTGAATCTTGGAACTATTGGATCAGTAG  150

seq1  CTGGCAACTGCAAATTAAAAATCATAACAGCTGGATGAGGTGACACTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAACTGCAAATTAAAAATCATAACAGCTGGATGAGGTGACACTTAC  200

seq1  AAAAGGGCCACCCCAATAGTCAGGAATAAAAAAATGCCAGAGGAAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGCCACCCCAATAGTCAGGAATAAAAAAATGCCAGAGGAAGAAAC  250

seq1  ACAAGGAAATCCCTCAGGACAGTATATCTGGCCAGTGGGTGGGTACCGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAATCCCTCAGGACAGTATATCTGGCCAGTGGGTGGGTACCGGC  300

seq1  ATTGTGTCATACTTGGTGCATACTAGAACTGTCTTTCTATGAAATAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTCATACTTGGTGCATACTAGAACTGTCTTTCTATGAAATAAAAT  350

seq1  TTGTTTTCTCATTCTAGAAGCTATCTGCTCCTGAGTTTTGCTCCATTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCTCATTCTAGAAGCTATCTGCTCCTGAGTTTTGCTCCATTCTT  400

seq1  GATGGGCTTTTTCTTACTAGGTGGGTGTGAGACTAATTTCCTGATCTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCTTTTTCTTACTAGGTGGGTGTGAGACTAATTTCCTGATCTAGA  450

seq1  GTAAGAAACATTCCATATTTAGGGTCACTGAGTCAACAGGATGAAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAACATTCCATATTTAGGGTCACTGAGTCAACAGGATGAAGAAAA  500

seq1  CGGTAAATAATTTTTTCTCTTTACCAGGAACATTTTGTTTGTTAATTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAAATAATTTTTTCTCTTTACCAGGAACATTTTGTTTGTTAATTTTG  550

seq1  ATTTTACTTATTTGTTTATCTGTTTCTTTATTCCCTTCTTTATTTATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTTATTTGTTTATCTGTTTCTTTATTCCCTTCTTTATTTATCCA  600

seq1  CAGCATCAATTAACCTGAAAGGCCGATCACCAGTGAGTGTCTCTTGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCAATTAACCTGAAAGGCCGATCACCAGTGAGTGTCTCTTGGTAG  650

seq1  GAGAACAGTGGCAACCTGTCTTCATTTTGTCACTTTTCAACCCCTCAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGTGGCAACCTGTCTTCATTTTGTCACTTTTCAACCCCTCAGTC  700

seq1  TACTTAGATTTATTCCTCCTGATGTTTCAGCAGCCAAAGTCCAGTCATCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGATTTATTCCTCCTGATGTTTCAGCAGCCAAAGTCCAGTCATCG  750

seq1  TTCTCTTAAAGTGACATCCT--GGGGGGGGGGGATTGCT  787
      ||||||||||||||||||||  ||||||||||||||| |
seq2  TTCTCTTAAAGTGACATCCTGGGGGGGGGGGGGATTGTT  789