BAC Information

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BAC

Clone NameB6Ng01-113F08
Chromosome11 (Build37)
Map Location 29,063,280 - 29,214,792
singlet/doubletdoublet
Overlap geneA630052C17Rik, Smek2, LOC100042972, Ccdc104
Upstream geneEG626571, Ccdc85a, Efemp1, LOC382504, Pnpt1
Downstream geneLOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403, Rtn4, C230094A16Rik, 4931440F15Rik, Spnb2, EG666427
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113F08.bB6Ng01-113F08.g
ACCDH919156DH919157
length1,113588
definitionDH919156|Mus musculus domesticus DNA, BAC clone: B6Ng01-113F08, 5' end.DH919157|Mus musculus domesticus DNA, BAC clone: B6Ng01-113F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,213,669 - 29,214,792)(29,063,280 - 29,063,867)
sequence
gaattctccatgcaaatggtctggagatggcccttggtttcctttcctga
tgacaagataatcaaagtctgctttgggaggaaaggaaacagtatttaag
gcagaaacaaaggtaatggcactgtctttttgttacaaatacctctctga
tggtggtgggtcggaggaaatgcctatacaaccataagtaatagcctgag
atattaggagctttgatttttttcctcctctcttagcattaaaaatcaat
atgtaatttttttaaaaattattttatttttaatttatttcttatactcc
atatttcattccctgccccccatccaccctccaactgttacacatcccac
acctcctccccacaccaccccaactccacgtggatgccaccaccccatgt
gacctctaaactccctggggcctccagtctcttgattgttaggtgcatca
tctctgaatgaacacagacccagaagccctctactgtatgtgcgttgggg
acctcatatgagctggtatatgctgtccctttggtggtccagtgtttgag
agatctcggggttccagattaattgagactgctggtcttcctacaggatt
gcccttctcctcagcttctttcagctttccctaattcaacaacagcggtc
agctgcttctgcccattggttgagtgcaaatatctgcatctgactctttc
agctgcttgttgcatctttgggagggcagtcaactgtacattttacaagg
taaaaagaaagtaaaataggatgtcagagtgccaggcttaatgggttgag
atggatttaatgaagctactcttgtaccagattacagaaaatatcagcta
agaatgcacacagggctggatcagccaaatctagaatatggaaaattctt
cagacagatgacctgtttttccacaagaataaactctagaattattttga
gatgtcacaaatgcatgaggacagtgccccctctgctaggacatggttgg
gcttaattcttccataggtaaatattctgagtagaaattgagatgaagaa
gtctgcctgcaacttctcctcttgagggaagcagttgccaaattaggaaa
gctgagtcggggg
gaattcattcatttaacatttactatggactgagcactatgacatgtgca
gtgacgtcagcaagcaaagctaaaagttctaaaatgcttagtaaacaagc
atggaacacatgatgatgtagtagcagatgctttaaattagaaagacatt
tgcgtaaggggttgaactgatctgtcctataagtccatgatgaacaaaat
caccttcaggaagaaaggatttgtttagtggcttgctcccatgcattcct
cagcttattttcttaaaccatccaggatcacctgactaggggtggtgcta
atgagagaatgcttccatctgattagcctataggcaagtctgttggggca
ttttattggttaatgcttgatatgcaagtcttagaagtcaactaaaacag
cactacttgattatctcacggggaagtggaatataaagttgaaagaggag
gaagcagtcaaaatgctaactttagcctgcaggttgtaaagataatagat
ctgatatcagtggacaactagctaaataagagtgaaagttatagaaagca
gggtttttttgtttgtttggttggttggttggtttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_29213669_29214792
seq2: B6Ng01-113F08.b_48_1160 (reverse)

seq1  CCCCAGACTCAGCTTTCCTAATATGGCAACTGCTTCCCTCAAAGAGGTAG  50
      |||| ||||||||||||||||| ||||||||||||||||| |||||| ||
seq2  CCCCCGACTCAGCTTTCCTAATTTGGCAACTGCTTCCCTC-AAGAGG-AG  48

seq1  AAGTTTGCAGACA-ACTTCTCCATTCAAATCTCTACTCAGAATATTTACC  99
      ||| |||||| || |||||| |||   ||| |||||||||||||||||||
seq2  AAG-TTGCAGGCAGACTTCTTCATCTCAATTTCTACTCAGAATATTTACC  97

seq1  TATGGAGAAATTAAGCCCCAAACAATGTCCTAGCAGAGGGGGCACTGTCC  149
      ||||||  ||||||||||  ||| ||||||||||||||||||||||||||
seq2  TATGGAAGAATTAAGCCC--AACCATGTCCTAGCAGAGGGGGCACTGTCC  145

seq1  TCCACTGCATTTGTGACATCTTCAAAATAATTCTAGAGTTTATTTCTTGT  199
      ||   ||||||||||||||| ||||||||||||||||||||| |||||||
seq2  TC--ATGCATTTGTGACATC-TCAAAATAATTCTAGAGTTTA-TTCTTGT  191

seq1  GGAAAAAACAGGTCATCTGTTCTGAAGAATTTTCCATATTCTAGATTTGG  249
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GG-AAAAACAGGTCATCTG-TCTGAAGAATTTTCCATATTCTAGATTTGG  239

seq1  CTGATCCAGCCCTGTGTGCATTTCTTAGCTGATATTTTCTGTAATCTGGT  299
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGATCCAGCCCTGTGTGCA-TTCTTAGCTGATATTTTCTGTAATCTGGT  288

seq1  ACAAGAGTAGCTTCATTAAATCCATCTCAACCCATTAAGCCTGGCACTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGTAGCTTCATTAAATCCATCTCAACCCATTAAGCCTGGCACTCT  338

seq1  GACATCCTATTTTACTTTCTTTTTACCTTGTAAAATGTACAGTTGACTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCTATTTTACTTTCTTTTTACCTTGTAAAATGTACAGTTGACTGC  388

seq1  CCTCCCAAAGATGCAACAAGCAGCTGAAAGAGTCAGATGCAGATATTTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAAGATGCAACAAGCAGCTGAAAGAGTCAGATGCAGATATTTGC  438

seq1  ACTCAACCAATGGGCAGAAGCAGCTGACCGCTGTTGTTGAATTAGGGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACCAATGGGCAGAAGCAGCTGACCGCTGTTGTTGAATTAGGGAAA  488

seq1  GCTGAAAGAAGCTGAGGAGAAGGGCAATCCTGTAGGAAGACCAGCAGTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAAGAAGCTGAGGAGAAGGGCAATCCTGTAGGAAGACCAGCAGTCT  538

seq1  CAATTAATCTGGAACCCCGAGATCTCTCAAACACTGGACCACCAAAGGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAATCTGGAACCCCGAGATCTCTCAAACACTGGACCACCAAAGGGA  588

seq1  CAGCATATACCAGCTCATATGAGGTCCCCAACGCACATACAGTAGAGGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATATACCAGCTCATATGAGGTCCCCAACGCACATACAGTAGAGGGC  638

seq1  TTCTGGGTCTGTGTTCATTCAGAGATGATGCACCTAACAATCAAGAGACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTCTGTGTTCATTCAGAGATGATGCACCTAACAATCAAGAGACT  688

seq1  GGAGGCCCCAGGGAGTTTAGAGGTCACATGGGGTGGTGGCATCCACGTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCCCAGGGAGTTTAGAGGTCACATGGGGTGGTGGCATCCACGTGG  738

seq1  AGTTGGGGTGGTGTGGGGAGGAGGTGTGGGATGTGTAACAGTTGGAGGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGGTGGTGTGGGGAGGAGGTGTGGGATGTGTAACAGTTGGAGGGT  788

seq1  GGATGGGGGGCAGGGAATGAAATATGGAGTATAAGAAATAAATTAAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGGGGCAGGGAATGAAATATGGAGTATAAGAAATAAATTAAAAAT  838

seq1  AAAATAATTTTTAAAAAAATTACATATTGATTTTTAATGCTAAGAGAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTTTTAAAAAAATTACATATTGATTTTTAATGCTAAGAGAGGA  888

seq1  GGAAAAAAATCAAAGCTCCTAATATCTCAGGCTATTACTTATGGTTGTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAATCAAAGCTCCTAATATCTCAGGCTATTACTTATGGTTGTAT  938

seq1  AGGCATTTCCTCCGACCCACCACCATCAGAGAGGTATTTGTAACAAAAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTCCTCCGACCCACCACCATCAGAGAGGTATTTGTAACAAAAAG  988

seq1  ACAGTGCCATTACCTTTGTTTCTGCCTTAAATACTGTTTCCTTTCCTCCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCCATTACCTTTGTTTCTGCCTTAAATACTGTTTCCTTTCCTCCC  1038

seq1  AAAGCAGACTTTGATTATCTTGTCATCAGGAAAGGAAACCAAGGGCCATC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGACTTTGATTATCTTGTCATCAGGAAAGGAAACCAAGGGCCATC  1088

seq1  TCCAGACCATTTGCATGGAGAATTC  1124
      |||||||||||||||||||||||||
seq2  TCCAGACCATTTGCATGGAGAATTC  1113

seq1: chr11_29063280_29063867
seq2: B6Ng01-113F08.g_68_655

seq1  GAATTCATTCATTTAACATTTACTATGGACTGAGCACTATGACATGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATTTAACATTTACTATGGACTGAGCACTATGACATGTGCA  50

seq1  GTGACGTCAGCAAGCAAAGCTAAAAGTTCTAAAATGCTTAGTAAACAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACGTCAGCAAGCAAAGCTAAAAGTTCTAAAATGCTTAGTAAACAAGC  100

seq1  ATGGAACACATGATGATGTAGTAGCAGATGCTTTAAATTAGAAAGACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACACATGATGATGTAGTAGCAGATGCTTTAAATTAGAAAGACATT  150

seq1  TGCGTAAGGGGTTGAACTGATCTGTCCTATAAGTCCATGATGAACAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTAAGGGGTTGAACTGATCTGTCCTATAAGTCCATGATGAACAAAAT  200

seq1  CACCTTCAGGAAGAAAGGATTTGTTTAGTGGCTTGCTCCCATGCATTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCAGGAAGAAAGGATTTGTTTAGTGGCTTGCTCCCATGCATTCCT  250

seq1  CAGCTTATTTTCTTAAACCATCCAGGATCACCTGACTAGGGGTGGTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTATTTTCTTAAACCATCCAGGATCACCTGACTAGGGGTGGTGCTA  300

seq1  ATGAGAGAATGCTTCCATCTGATTAGCCTATAGGCAAGTCTGTTGGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGAATGCTTCCATCTGATTAGCCTATAGGCAAGTCTGTTGGGGCA  350

seq1  TTTTATTGGTTAATGCTTGATATGCAAGTCTTAGAAGTCAACTAAAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGGTTAATGCTTGATATGCAAGTCTTAGAAGTCAACTAAAACAG  400

seq1  CACTACTTGATTATCTCACGGGGAAGTGGAATATAAAGTTGAAAGAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACTTGATTATCTCACGGGGAAGTGGAATATAAAGTTGAAAGAGGAG  450

seq1  GAAGCAGTCAAAATGCTAACTTTAGCCTGCAGGTTGTAAAGATAATAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGTCAAAATGCTAACTTTAGCCTGCAGGTTGTAAAGATAATAGAT  500

seq1  CTGATATCAGTGGACAACTAGCTAAATAAGAGTGAAAGTTATAGAAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATCAGTGGACAACTAGCTAAATAAGAGTGAAAGTTATAGAAAGCA  550

seq1  GGGTTTTTTTGTTTGTTTGGTTGGTTGGTTGGTTTTTT  588
      ||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTTTGTTTGTTTGGTTGGTTGGTTGGTTTTTT  588