BAC Information

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BAC

Clone NameB6Ng01-113F21
Chromosome11 (Build37)
Map Location 108,218,400 - 108,329,116
singlet/doubletdoublet
Overlap geneApoh, LOC100041381, Ccdc46
Upstream genePitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
Downstream geneOlfr1397-ps1, LOC629945, Axin2, E030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113F21.bB6Ng01-113F21.g
ACCDH919181DH919182
length1,0891,148
definitionDH919181|Mus musculus domesticus DNA, BAC clone: B6Ng01-113F21, 5' end.DH919182|Mus musculus domesticus DNA, BAC clone: B6Ng01-113F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,218,400 - 108,219,475)(108,327,976 - 108,329,116)
sequence
gaattcaatctactgtcacctcttatgtggtaggcaagaatattgtccct
tttgactgttgagaaaattggggtacagtcaaatcacagagactatgcca
gcagagctaagattgagcccctacaaccatgccacaaaaccatccactaa
actggcttgccatctttggctgataccatcaccattgtccatgcagaacc
tccatagcttgacaagagttctttacccaagtcggtcctgtcagagcaga
atagattattttccctccccaagttcaagcgatcattcagttaagcatga
aagccgctgctgacaggatgtaaatattgagggagtcggagagaactcga
gccttccatctctctgagcgaggatggctcgtggtgattgactgagcagt
cctgagaaggaacaaacagatacttccctgtgccttctgagtcaccccgt
ttgccagctccttctttgtttgatacagcgtgtaatttacctcagaacaa
ttggacaaggcaaagatgataaaagcgaacagagactccgagaaatcgtc
atttgtttttccacaatattttaagcccggagcttctcaaagcaaagact
ccttagtgaagaagaatagcttcttgggttaggctgtggtctggcggtag
agcactagcccagcatccgtgaggatgtggactccattcccagcaccagg
aagaggacagaagaagtaaaggagacgagggagaggataccgtgtgcacg
tttagagttggtggcaattcttgtgagtgagaagtaaccctctgtgctgt
cctctatttgtcatgctgctcccagaaggatcccctttcctttccatagc
tgaacttacaggtagatcatggtcaagacagatgctattacaaacagtgt
caaaggctgggctcaagagacagcccataggttaagtggatatgctgtac
ttgcagaggccctgagttcaattcccagtacaacatgtttaaatgggttt
ccaaatgcctgtagccccagcctccaagaagaatggtatgcctcccctca
tccaggatcgacaagcccctgcccttcctggtgtgtgtg
gaattccatgccatgaagctgtcttcagctggaaatacagctaacttgaa
ctcttaggtatatacaaagacagcatcaaacttgcggtaatggaacgagc
agtcagagtgcaagttggacaatgagtaggaggaaagccaacccacaagt
ctctgtgaataacaaggctgcctgccatacaaaatacctacctggcctga
tgcttgcccagcctataactggtatatgtgcccaatttaagggtgtgaat
taatttcagagtgccaaagctaacagaaagaaaaaatttagtatcttagt
aactttccctgacatgttttttactactaagtaataacactagagaaaat
atatattttcccttttactttttctagtgctaaaatatataaccccatta
aactatttcaaataccagtgaaatgtagatttgccctgtaccattacaaa
gctaaacagtgttttgttagtaagatttaaaacccaaaggaagatcaatt
aaatattctccacaacagaaataatctacaagaactgatgccactaagat
ggtagaatgggaaacctcagggcttcctgcctcagttcatgaaccaattt
ccagtgtgcaccatggaaacaccagactagagtctcctgcaccacaagca
atgctacaaccacgtgcattaaaacaggtagaagggaacatgtgtgggtt
ctccggccccagcctcatcctggggtgaggaagaaagagaaggctgcata
ccaccatattgattttccaggtccaacttacaagttggatttcggtctca
cctgaatctgagctcttaaaagctgtcaggttatgaactgctagaacgca
ccaagtgtccatttgtgcactaggtagttagagtacacgctcagcacaga
actaacaactaaatcgccaaacatcactttctcccaggagggagaaaact
gggacacctaacactctggccttgcagaaggatgcttaagggactagatg
acattaggcaatgacggggcccagaactcttctagatgcatggggaactc
tactactccaggtttcacaagaaagtgaaagaaaaggcagaaataagtca
gattttcttcaaactttttcaggagccttccaaagggactttatttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_108218400_108219475
seq2: B6Ng01-113F21.b_47_1135

seq1  GAATTCAATCTACTGTCACCTCTTATGTGGTAGGCAAGAATATTGTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTACTGTCACCTCTTATGTGGTAGGCAAGAATATTGTCCCT  50

seq1  TTTGACTGTTGAGAAAATTGGGGTACAGTCAAATCACAGAGACTATGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTGTTGAGAAAATTGGGGTACAGTCAAATCACAGAGACTATGCCA  100

seq1  GCAGAGCTAAGATTGAGCCCCTACAACCATGCCACAAAACCATCCACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCTAAGATTGAGCCCCTACAACCATGCCACAAAACCATCCACTAA  150

seq1  ACTGGCTTGCCATCTTTGGCTGATACCATCACCATTGTCCATGCAGAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTTGCCATCTTTGGCTGATACCATCACCATTGTCCATGCAGAACC  200

seq1  TCCATAGCTTGACAAGAGTTCTTTACCCAAGTCGGTCCTGTCAGAGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGCTTGACAAGAGTTCTTTACCCAAGTCGGTCCTGTCAGAGCAGA  250

seq1  ATAGATTATTTTCCCTCCCCAAGTTCAAGCGATCATTCAGTTAAGCATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTATTTTCCCTCCCCAAGTTCAAGCGATCATTCAGTTAAGCATGA  300

seq1  AAGCCGCTGCTGACAGGATGTAAATATTGAGGGAGTCGGAGAGAACTCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGCTGCTGACAGGATGTAAATATTGAGGGAGTCGGAGAGAACTCGA  350

seq1  GCCTTCCATCTCTCTGAGCGAGGATGGCTCGTGGTGATTGACTGAGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCATCTCTCTGAGCGAGGATGGCTCGTGGTGATTGACTGAGCAGT  400

seq1  CCTGAGAAGGAACAAACAGATACTTCCCTGTGCCTTCTGAGTCACCCCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAAGGAACAAACAGATACTTCCCTGTGCCTTCTGAGTCACCCCGT  450

seq1  TTGCCAGCTCCTTCTTTGTTTGATACAGCGTGTAATTTACCTCAGAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGCTCCTTCTTTGTTTGATACAGCGTGTAATTTACCTCAGAACAA  500

seq1  TTGGACAAGGCAAAGATGATAAAAGCGAACAGAGACTCCGAGAAATCGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAAGGCAAAGATGATAAAAGCGAACAGAGACTCCGAGAAATCGTC  550

seq1  ATTTGTTTTTCCACAATATTTTAAGCCCGGAGCTTCTCAAAGCAAAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTTTCCACAATATTTTAAGCCCGGAGCTTCTCAAAGCAAAGACT  600

seq1  CCTTAGTGAAGAAGAATAGCTTCTTGGGTTAGGCTGTGGTCTGGCGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTGAAGAAGAATAGCTTCTTGGGTTAGGCTGTGGTCTGGCGGTAG  650

seq1  AGCACTAGCCCAGCATCCGTGAGGATGTGGACTCCATTCCCAGCACCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTAGCCCAGCATCCGTGAGGATGTGGACTCCATTCCCAGCACCAGG  700

seq1  AAGAGGACAGAAGAAGTAAAGGAGACGAGGGAGAGGATACCGTGTGCACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGACAGAAGAAGTAAAGGAGACGAGGGAGAGGATACCGTGTGCACG  750

seq1  TTTAGAGTTGGTGGCAATTCTTGTGAGTGAGAAGTAACCCTCTGTGCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGTTGGTGGCAATTCTTGTGAGTGAGAAGTAACCCTCTGTGCTGT  800

seq1  CCTCTA-TTGTCATGCTGCTCCCAGAAGGATCCCCTTTCCTTTCCATAGC  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATTTGTCATGCTGCTCCCAGAAGGATCCCCTTTCCTTTCCATAGC  850

seq1  TGAACTTACAGGTAGATCATGGTCAAGACAGATGCTATTACAAACAGTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTACAGGTAGATCATGGTCAAGACAGATGCTATTACAAACAGTGT  900

seq1  CAAAGGCTGGGCTCAAGAGACAGCCCATAGGTTAAGTGGATATGCTGTAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTGGGCTCAAGAGACAGCCCATAGGTTAAGTGGATATGCTGTAC  950

seq1  TTGCAGAGGCCCTGAGTTCAATTCCCAGTAC-ACATG-TTAAAT-GGTTT  996
      ||||||||||||||||||||||||||||||| ||||| |||||| |||||
seq2  TTGCAGAGGCCCTGAGTTCAATTCCCAGTACAACATGTTTAAATGGGTTT  1000

seq1  CCAAATGCCTGTAGCCCCAG-CTCC-AGAAG-ATGGTATGC--TCCCTCA  1041
      |||||||||||||||||||| |||| ||||| |||||||||   ||||||
seq2  CCAAATGCCTGTAGCCCCAGCCTCCAAGAAGAATGGTATGCCTCCCCTCA  1050

seq1  TCCAGGATCGACAAGCACCTG-CCTTC---GTGTGTGTG  1076
      |||||||||||||||| |||| |||||   |||||||||
seq2  TCCAGGATCGACAAGCCCCTGCCCTTCCTGGTGTGTGTG  1089

seq1: chr11_108327976_108329116
seq2: B6Ng01-113F21.g_68_1215 (reverse)

seq1  TTAAAT-AAGT-CCTTTGGGAAGCTCCTGAAAAAGTTTGAAG-ATATCTG  47
      |||||| |||| ||||||| | |||||||||||||||||||| | |||||
seq2  TTAAATAAAGTCCCTTTGGAAGGCTCCTGAAAAAGTTTGAAGAAAATCTG  50

seq1  ACTTATTCTTGCCTTTTCTTTC-CCTTCTTGTGAAA-CTGGAGTAGTAGA  95
      |||||||  ||||||||||||| | ||||||||||| |||||||||||||
seq2  ACTTATTTCTGCCTTTTCTTTCACTTTCTTGTGAAACCTGGAGTAGTAGA  100

seq1  G-TCCCCATGCATCTAG-AGAGTTCT-GGCCCCGTCATTGCCT-ATGTCA  141
      | ||||||||||||||| |||||||| |||||||||||||||| ||||||
seq2  GTTCCCCATGCATCTAGAAGAGTTCTGGGCCCCGTCATTGCCTAATGTCA  150

seq1  TCTAGTCCCTTAGGCATCCTTCTGCAAGGCCAGAGTGTTAGGTGTCCCAG  191
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCCCTTAAGCATCCTTCTGCAAGGCCAGAGTGTTAGGTGTCCCAG  200

seq1  TTTTCTCCCTCCCTGGGAGAAAGTGATGTTTGGGCGATTTAGTTGTTAGT  241
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  TTTTCTCCCT-CCTGGGAGAAAGTGATGTTT-GGCGATTTAGTTGTTAGT  248

seq1  TCTGTGCTGAGCGTGTACTCTAACTACCTAGTGCACAAATGGACACTTGG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTGAGCGTGTACTCTAACTACCTAGTGCACAAATGGACACTTGG  298

seq1  TGCGTTCTAGCAGTTCATAACCTGACAGCTTTTAAGAGCTCAGATTCAGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTCTAGCAGTTCATAACCTGACAGCTTTTAAGAGCTCAGATTCAGG  348

seq1  TGAGACCGAAATCCAACTTGTAAGTTGGACCTGGAAAATCAATATGGTGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCGAAATCCAACTTGTAAGTTGGACCTGGAAAATCAATATGGTGG  398

seq1  TATGCAGCCTTCTCTTTCTTCCTCACCCCAGGATGAGGCTGGGGCCGGAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGCCTTCTCTTTCTTCCTCACCCCAGGATGAGGCTGGGGCCGGAG  448

seq1  AACCCACACATGTTCCCTTCTACCTGTTTTAATGCACGTGGTTGTAGCAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACACATGTTCCCTTCTACCTGTTTTAATGCACGTGGTTGTAGCAT  498

seq1  TGCTTGTGGTGCAGGAGACTCTAGTCTGGTGTTTCCATGGTGCACACTGG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTGGTGCAGGAGACTCTAGTCTGGTGTTTCCATGGTGCACACTGG  548

seq1  AAATTGGTTCATGAACTGAGGCAGGAAGCCCTGAGGTTTCCCATTCTACC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGTTCATGAACTGAGGCAGGAAGCCCTGAGGTTTCCCATTCTACC  598

seq1  ATCTTAGTGGCATCAGTTCTTGTAGATTATTTCTGTTGTGGAGAATATTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGTGGCATCAGTTCTTGTAGATTATTTCTGTTGTGGAGAATATTT  648

seq1  AATTGATCTTCCTTTGGGTTTTAAATCTTACTAACAAAACACTGTTTAGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATCTTCCTTTGGGTTTTAAATCTTACTAACAAAACACTGTTTAGC  698

seq1  TTTGTAATGGTACAGGGCAAATCTACATTTCACTGGTATTTGAAATAGTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATGGTACAGGGCAAATCTACATTTCACTGGTATTTGAAATAGTT  748

seq1  TAATGGGGTTATATATTTTAGCACTAGAAAAAGTAAAAGGGAAAATATAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGGTTATATATTTTAGCACTAGAAAAAGTAAAAGGGAAAATATAT  798

seq1  ATTTTCTCTAGTGTTATTACTTAGTAGTAAAAAACATGTCAGGGAAAGTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTAGTGTTATTACTTAGTAGTAAAAAACATGTCAGGGAAAGTT  848

seq1  ACTAAGATACTAAATTTTTTCTTTCTGTTAGCTTTGGCACTCTGAAATTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGATACTAAATTTTTTCTTTCTGTTAGCTTTGGCACTCTGAAATTA  898

seq1  ATTCACACCCTTAAATTGGGCACATATACCAGTTATAGGCTGGGCAAGCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACACCCTTAAATTGGGCACATATACCAGTTATAGGCTGGGCAAGCA  948

seq1  TCAGGCCAGGTAGGTATTTTGTATGGCAGGCAGCCTTGTTATTCACAGAG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCAGGTAGGTATTTTGTATGGCAGGCAGCCTTGTTATTCACAGAG  998

seq1  ACTTGTGGGTTGGCTTTCCTCCTACTCATTGTCCAACTTGCACTCTGACT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGGGTTGGCTTTCCTCCTACTCATTGTCCAACTTGCACTCTGACT  1048

seq1  GCTCGTTCCATTACCGCAAGTTTGATGCTGTCTTTGTATATACCTAAGAG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGTTCCATTACCGCAAGTTTGATGCTGTCTTTGTATATACCTAAGAG  1098

seq1  TTCAAGTTAGCTGTATTTCCAGCTGAAGACAGCTTCATGGCATGGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTAGCTGTATTTCCAGCTGAAGACAGCTTCATGGCATGGAATTC  1148