BAC Information

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BAC

Clone NameB6Ng01-114A17
Chromosome11 (Build37)
Map Location 102,432,871 - 102,570,536
singlet/doubletdoublet
Overlap geneLOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43
Upstream geneNbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1
Downstream geneAdam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114A17.bB6Ng01-114A17.g
ACCDH919670DH919671
length1,204446
definitionDH919670|Mus musculus domesticus DNA, BAC clone: B6Ng01-114A17, 5' end.DH919671|Mus musculus domesticus DNA, BAC clone: B6Ng01-114A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,569,322 - 102,570,536)(102,432,871 - 102,433,422)
sequence
gaattctggggttacagatggccagaagcacacattttgaagacaggtgc
ttggaagtgttctgatctttaggtgactccatttctagtaaccgtgtatg
cgacatctttaaaaccgtaatctcctaccagatgcggtggtcttcgtctg
taatcctagcatttaggagacagaggcggaaggagcaggaatttgaagtc
atccttagccacatcgggagctcaagaccaacctggcaaggcagccacgg
accagtccttgtctccacagaatgaacaaaacaagaacaaatccttacct
gcacacttaaaaatccactggctgctcctgcgggtgactcttgtgggttt
gattcccggcacccacacggtgtttacaagtgtccatatctccagttcca
gggcatctgatgggctcttctgaactcccctagcaccgagcatggacaca
gtgcccatgcatacatgcaggtaagacactcacacataaaataaaaatga
atacatctcattttaaaaagtgtatgaaacagaatttccaaagccactta
aaatattccaaaaaagttttcagtgggtttcgaatctgccaaaaataaaa
aatgcaatactttgtgactattttacaaaaacaactgataaacatcagga
aaagataggaacttattcacccaatttcaataagaagtattcaaatatat
aactgaaaaatgactagttttattgagtgcaaagccatagatttgaaaat
ggagataacaaatattcataaaagctgacatactgttatagtaataaacc
tctgtgtatccatcatccagactatttattcacatctcacccactgaaga
ccattcatcttgacagtcccccaaacacagggaaataaaaagattttaaa
accaaggaattaaatgactgctataataaaaatgtgaaatcacttttgga
aaaataatgaatctttagcactaattaactggagcacttaaaaattggct
gggttgctggggccgtgctggcacacgccttaatcccagcacttgggagg
gagaggcagcggatttcttggagtcaggcagctggtcttacagaggggct
ttcagggctaacaggtaacccttcttcgaaaaacgatactaacaaccgaa
tcaaccaaacaacaaacgaaaaggctgggtgtaaacattacactaatcca
atca
cttccaacatctgaatatgaggctccttaggtttagcagcaggtcccttt
actctctgaatttttagaagttttgtttattaccatgacacatgcatgta
tgatacatgggtttgcatgcaggcacccacacaccacagcacacatgtgt
ggaggtcaggttcaggagtgcattctccccatctgccttgagacccaggg
tgcaaactcaggcctttaggcttcctcctcctcctcctcctcttcctcct
cttcttcctcttccttcttttcttatagtactgaggattgaatctaagcc
ttgtcccttgctaggcaagcactctattactgaatcacataactggccct
tttaaaaaaaattttttttaatttatttaatatgagtacattgtagctgt
cttcagacacaccagaagagggcatcagatcttattacagatggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102569322_102570536
seq2: B6Ng01-114A17.b_48_1251 (reverse)

seq1  TGATT---TTAGTGATAATGTTTACCAACCCAGCCTTTTTTGTTTTTTTG  47
      |||||   |||||| ||||||||||  ||||||||  ||||  ||| |||
seq2  TGATTGGATTAGTG-TAATGTTTAC--ACCCAGCC--TTTTCGTTTGTTG  45

seq1  TTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTGTTTTTTCGAGACA  97
      ||| |  ||| || | ||   || || | |        |||||||| | |
seq2  TTTGG--TTGATTCGGTT--GTTAGTATCG--------TTTTTCGA-AGA  82

seq1  GGGTTTCCCTGTTTAGCCCTGGAAGCCACTCTGT-AGACCAGGCTGGCCT  146
       || || |||| ||||||||| ||||| |||||| |||||| ||| ||||
seq2  AGGGTTACCTG-TTAGCCCTGAAAGCCCCTCTGTAAGACCA-GCT-GCCT  129

seq1  TGAACTC--AGAAATCCGCCTGCCTCTCCCTCCCAAGTGCTGGGATTAAA  194
         ||||  ||||||||| |||||||||||||||||||||||||||| ||
seq2  --GACTCCAAGAAATCCG-CTGCCTCTCCCTCCCAAGTGCTGGGATT-AA  175

seq1  GGCGTGTGCCAGCACGG-CCCAGCAACCCAGCC-ATTTTTAAGTGCT-CA  241
      ||||||||||||||||| ||||||||||||||| ||||||||||||| ||
seq2  GGCGTGTGCCAGCACGGCCCCAGCAACCCAGCCAATTTTTAAGTGCTCCA  225

seq1  GTTAATTAGTGCTAAAGATTCATTATTTTT-CAAAAGTGATTTCACATTT  290
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTTAATTAGTGCTAAAGATTCATTATTTTTCCAAAAGTGATTTCACATTT  275

seq1  T--ATATAGCAGTCATTTAATT-CTTGGTTTTAAATTCTTTTTATTT-CC  336
      |   |||||||||||||||||| |||||||||||| ||||||||||| ||
seq2  TTATTATAGCAGTCATTTAATTCCTTGGTTTTAAAATCTTTTTATTTCCC  325

seq1  TGTGTTTGGGGGACTGTCAAGATGAATGGTCTTCAGTGGGTGAGATGTGA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGGGGGACTGTCAAGATGAATGGTCTTCAGTGGGTGAGATGTGA  375

seq1  ATAAATAGTCTGGATGATGGATACACAGAGGTTTATTACTATAACAGTAT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAGTCTGGATGATGGATACACAGAGGTTTATTACTATAACAGTAT  425

seq1  GTCAGCTTTTATGAATATTTGTTATCTCCATTTTCAAATCTATGGCTTTG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTTTTATGAATATTTGTTATCTCCATTTTCAAATCTATGGCTTTG  475

seq1  CACTCAATAAAACTAGTCATTTTTCAGTTATATATTTGAATACTTCTTAT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAATAAAACTAGTCATTTTTCAGTTATATATTTGAATACTTCTTAT  525

seq1  TGAAATTGGGTGAATAAGTTCCTATCTTTTCCTGATGTTTATCAGTTGTT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTGGGTGAATAAGTTCCTATCTTTTCCTGATGTTTATCAGTTGTT  575

seq1  TTTGTAAAATAGTCACAAAGTATTGCATTTTTTATTTTTGGCAGATTCGA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAAATAGTCACAAAGTATTGCATTTTTTATTTTTGGCAGATTCGA  625

seq1  AACCCACTGAAAACTTTTTTGGAATATTTTAAGTGGCTTTGGAAATTCTG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACTGAAAACTTTTTTGGAATATTTTAAGTGGCTTTGGAAATTCTG  675

seq1  TTTCATACACTTTTTAAAATGAGATGTATTCATTTTTATTTTATGTGTGA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATACACTTTTTAAAATGAGATGTATTCATTTTTATTTTATGTGTGA  725

seq1  GTGTCTTACCTGCATGTATGCATGGGCACTGTGTCCATGCTCGGTGCTAG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTACCTGCATGTATGCATGGGCACTGTGTCCATGCTCGGTGCTAG  775

seq1  GGGAGTTCAGAAGAGCCCATCAGATGCCCTGGAACTGGAGATATGGACAC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTCAGAAGAGCCCATCAGATGCCCTGGAACTGGAGATATGGACAC  825

seq1  TTGTAAACACCGTGTGGGTGCCGGGAATCAAACCCACAAGAGTCACCCGC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAACACCGTGTGGGTGCCGGGAATCAAACCCACAAGAGTCACCCGC  875

seq1  AGGAGCAGCCAGTGGATTTTTAAGTGTGCAGGTAAGGATTTGTTCTTGTT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAGCCAGTGGATTTTTAAGTGTGCAGGTAAGGATTTGTTCTTGTT  925

seq1  TTGTTCATTCTGTGGAGACAAGGACTGGTCCGTGGCTGCCTTGCCAGGTT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATTCTGTGGAGACAAGGACTGGTCCGTGGCTGCCTTGCCAGGTT  975

seq1  GGTCTTGAGCTCCCGATGTGGCTAAGGATGACTTCAAATTCCTGCTCCTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGAGCTCCCGATGTGGCTAAGGATGACTTCAAATTCCTGCTCCTT  1025

seq1  CCGCCTCTGTCTCCTAAATGCTAGGATTACAGACGAAGACCACCGCATCT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTCTGTCTCCTAAATGCTAGGATTACAGACGAAGACCACCGCATCT  1075

seq1  GGTAGGAGATTACGGTTTTAAAGATGTCGCATACACGGTTACTAGAAATG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGATTACGGTTTTAAAGATGTCGCATACACGGTTACTAGAAATG  1125

seq1  GAGTCACCTAAAGATCAGAACACTTCCAAGCACCTGTCTTCAAAATGTGT  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACCTAAAGATCAGAACACTTCCAAGCACCTGTCTTCAAAATGTGT  1175

seq1  GCTTCTGGCCATCTGTAACCCCAGAATTC  1215
      |||||||||||||||||||||||||||||
seq2  GCTTCTGGCCATCTGTAACCCCAGAATTC  1204

seq1: chr11_102432871_102433422
seq2: B6Ng01-114A17.g_65_516

seq1  GAATTCCTTCCAACATCTGAATATGAGGCTCCTTAGGTTTAGCAGCAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCAACATCTGAATATGAGGCTCCTTAGGTTTAGCAGCAGGT  50

seq1  CCCTTTACTCTCTGAATTTTTAGAAGTTTTGTTTATTACCATGACACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTACTCTCTGAATTTTTAGAAGTTTTGTTTATTACCATGACACATG  100

seq1  CATGTATGATACATGGGTTTGCATGCAGGCACCCACACACCACAGCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGATACATGGGTTTGCATGCAGGCACCCACACACCACAGCACAC  150

seq1  ATGTGTGGAGGTCAGGTTCAGGAGTGCATTCTCCCCATCTGCCTTGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGGAGGTCAGGTTCAGGAGTGCATTCTCCCCATCTGCCTTGAGAC  200

seq1  CCAGGGTGCAAACTCAGGCCTTTAGGCTTCCTCCTCCTCCTCCTCCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTGCAAACTCAGGCCTTTAGGCTTCCTCCTCCTCCTCCTCCTCTT  250

seq1  CCTCCTCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTTTTTGGTTT  300
      |||||||||||||||| |||| ||              || || | ||  
seq2  CCTCCTCTTCTTCCTCTTCCTTCT-------------TTTCTTATAGT--  285

seq1  TTTCGAGACAGGATT-TCTCTGTGTAGCCGTGGCTGTCCTGGAACTCATT  349
           |   ||||||   |||    |||| || |   ||| |        
seq2  -----ACTGAGGATTGAATCT---AAGCCTTGTC---CCTTG--------  316

seq1  CTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCC  399
             | ||||  ||     |||                         
seq2  -------CTAGGCAAGC-----ACT-------------------------  329

seq1  CAAGTGCTGGGATCAAAGGCATGCACCACCACTGCCCAGTTTCTTCTTCT  449
      | | | || | ||||           ||  |||| ||           ||
seq2  CTATTACT-GAATCA-----------CATAACTGGCC-----------CT  356

seq1  TTTTCTTAAAGAATTATTTATTTATTTTATGTGTATATATGAGCACACTG  499
      |    ||||| ||   ||| |||| |||||   |  ||||||| ||| ||
seq2  T----TTAAAAAAAATTTTTTTTAATTTAT---TTAATATGAGTACATTG  399

seq1  TTGTTCTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATG  549
      | | | ||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTTATTACAGATG  449

seq1  GTT  552
      |||
seq2  GTT  452