BAC Information

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BAC

Clone NameB6Ng01-114E06
ChromosomeX (Build37)11 (Build37)
Map Location 102,074,211 - 102,074,29437,720,293 - 37,721,026
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG668426, LOC668430, Rnf12, C77370, Vcp-ps, EG621542, Uprt, Zdhhc15, Magee2
Downstream geneLOC622098, LOC676331, 5530601H04Rik, 2610029G23Rik, Magee1, LOC622159, LOC668454, E530001F21Rik, LOC622202, LOC100043213, LOC668458, Cypt2, EG633570, Fgf16, Atrx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114E06.bB6Ng01-114E06.g
ACCDH919828DH919829
length7221,022
definitionDH919828|Mus musculus domesticus DNA, BAC clone: B6Ng01-114E06, 5' end.DH919829|Mus musculus domesticus DNA, BAC clone: B6Ng01-114E06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(102,074,211 - 102,074,294)(37,720,293 - 37,721,026)
sequence
gaattctgtgggcttcttgtattttcatgggcatctctctctttatgtta
gggacgttttcttctataatttttttgaagatatttgctggccctttaac
ttggaaatctttattctcatctactcctattatcagtaggtttggtgttc
tcattctgtcttggatttcctggatgttttgagttaggatatttttgcat
tttgcattttctttgttgagtccatgttttctgtggaatcttctgcacct
gagattctctcttccatctcttgtattctgttggtgatgctcgaatctat
gattcctgatttctttccttttatttctacctccatagttgtctcccttt
gggttttctttacttccatttttagatgttggatggttttgttcaattcc
atcacctgtttggttgtgttttcctgtaattctttaagggatttttgtgc
ttcctctttaagggcttctacctatttagcattgttctgtatttctttga
gtcattaatacccttcttaaaatcctctacagcatcattagatatgattt
taaatctgaaccttgcttttcaggtgttttggggtatccaggacttgctg
tggtgggtgtactaggttctgattaagccaaatggtcttttgtttctgtt
aataagattttttttccatttttattaggatttagctcatttacatttcc
aatgctataccaaaagccccca
gaattcagttggcctcctatttctttacttctgggaacatcatgagtaat
tagccaatgccacaggtcaacatgactcatagcattatgatcatttgcta
tgctgctgctgttcattacagtaagttcactcaccttacctttgatgact
gagtgatgtcacaatgcccttaccacttcagtatctcactagatctcttg
tgttgaagtcagccaatgagcttctggggatccagcaacagcagctaaag
gaaagaagaattaatcttgttttttatttctatgggatacagtctatcat
agcaataaaaaaaaataagacagtaggaggggtagctggtatcaaagaag
atatgaatgcttgcactcaacttaattttttcctcttagctaactcacaa
acatggatgatacctcccttatgtataatatatctctgtgtctctgttcg
tcaggtaatttaatttagacacttcctcacagacatgccaagaagtttgt
ctcttcagttgattacaggtccagtcaagtaggcaaccaactgtaacctt
cacattcgcatcaacttgaagccaagtgatatcagacatctctagattat
ggcaggctatgttttggtcaatatttcagtcaaccgattaaacaaattgt
agtggtttgagtaagaatggccctcatagactcatatatttgaatgcttt
gtcatcagggagtggcactatgtaaaagagtcgggaggtatgactttatt
ggggaaagtgtgtcactggaggtgggttttgaggtttcaaaaaaccaaca
ccagacccagatcatccgcctatggattgggaagtgaactctctgttact
tctctaggaccatgtctaccctcatgttgccatgttcccaccatgatgat
aatttgctagcctctgaaactgtaaacaaacccacaatgaatgctttctt
tgatatgattacattggtcatggtgtctctcacacatagagcagagacca
gatacaaagtttagcaacagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_102074211_102074294
seq2: B6Ng01-114E06.b_705_769 (reverse)

seq1  TGGGGGTGGGTGGATATGGGGGACTTTTGGTATAGCATTGGAAATGTAAA  50
                      |||||| |||||||||||||||||||||||||||
seq2  ----------------TGGGGG-CTTTTGGTATAGCATTGGAAATGTAAA  33

seq1  TGAGTTAATTACCTAATAAAAGATGGAAAAAAAA  84
      |||| ||| | |||||||||| ||||||||||||
seq2  TGAGCTAAAT-CCTAATAAAA-ATGGAAAAAAAA  65

seq1: chr11_37720293_37721026
seq2: B6Ng01-114E06.g_69_802

seq1  GAATTCAGTTGGCCTCCTATTTCTTTACTTCTGGGAACATCATGAGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGGCCTCCTATTTCTTTACTTCTGGGAACATCATGAGTAAT  50

seq1  TAGCCAATGCCACAGGTCAACATGACTCATAGCATTATGATCATTTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAATGCCACAGGTCAACATGACTCATAGCATTATGATCATTTGCTA  100

seq1  TGCTGCTGCTGTTCATTACAGTAAGTTCACTCACCTTACCTTTGATGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGCTGTTCATTACAGTAAGTTCACTCACCTTACCTTTGATGACT  150

seq1  GAGTGATGTCACAATGCCCTTACCACTTCAGTATCTCACTAGATCTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATGTCACAATGCCCTTACCACTTCAGTATCTCACTAGATCTCTTG  200

seq1  TGTTGAAGTCAGCCAATGAGCTTCTGGGGATCCAGCAACAGCAGCTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAAGTCAGCCAATGAGCTTCTGGGGATCCAGCAACAGCAGCTAAAG  250

seq1  GAAAGAAGAATTAATCTTGTTTTTTATTTCTATGGGATACAGTCTATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGAATTAATCTTGTTTTTTATTTCTATGGGATACAGTCTATCAT  300

seq1  AGCAATAAAAAAAAATAAGACAGTAGGAGGGGTAGCTGGTATCAAAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAAAAAAAAATAAGACAGTAGGAGGGGTAGCTGGTATCAAAGAAG  350

seq1  ATATGAATGCTTGCACTCAACTTAATTTTTTCCTCTTAGCTAACTCACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATGCTTGCACTCAACTTAATTTTTTCCTCTTAGCTAACTCACAA  400

seq1  ACATGGATGATACCTCCCTTATGTATAATATATCTCTGTGTCTCTGTTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGATGATACCTCCCTTATGTATAATATATCTCTGTGTCTCTGTTCG  450

seq1  TCAGGTAATTTAATTTAGACACTTCCTCACAGACATGCCAAGAAGTTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAATTTAATTTAGACACTTCCTCACAGACATGCCAAGAAGTTTGT  500

seq1  CTCTTCAGTTGATTACAGGTCCAGTCAAGTAGGCAACCAACTGTAACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGTTGATTACAGGTCCAGTCAAGTAGGCAACCAACTGTAACCTT  550

seq1  CACATTCGCATCAACTTGAAGCCAAGTGATATCAGACATCTCTAGATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCGCATCAACTTGAAGCCAAGTGATATCAGACATCTCTAGATTAT  600

seq1  GGCAGGCTATGTTTTGGTCAATATTTCAGTCAACCGATTAAACAAATTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCTATGTTTTGGTCAATATTTCAGTCAACCGATTAAACAAATTGT  650

seq1  AGTGGTTTGAGTAAGAATGGCCCTCATAGACTCATATATTTGAATGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTTGAGTAAGAATGGCCCTCATAGACTCATATATTTGAATGCTTT  700

seq1  GTCATCAGGGAGTGGCACTATGTAAAAGAGTCGG  734
      ||||||||||||||||||||||||||||||||||
seq2  GTCATCAGGGAGTGGCACTATGTAAAAGAGTCGG  734