BAC Information

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BAC

Clone NameB6Ng01-114L13
Chromosome11 (Build37)
Map Location 71,386,310 - 71,532,616
singlet/doubletdoublet
Overlap gene9230020A06Rik
Upstream geneMink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249
Downstream geneWscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114L13.bB6Ng01-114L13.g
ACCDH920171DH920172
length1,1561,013
definitionDH920171|Mus musculus domesticus DNA, BAC clone: B6Ng01-114L13, 5' end.DH920172|Mus musculus domesticus DNA, BAC clone: B6Ng01-114L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,386,310 - 71,387,481)(71,531,602 - 71,532,616)
sequence
gaattcaagagcaagtggagcctccagtttaaccctttaccccattttac
agataaggaagactgagagagtgagtcccagaaagaggaattgaattacc
ttggggaaactactaaagcctaaatcttgtggctttcactttcagcgtgc
tagtacttcacaaccatgctttctcttattccctggattttagagcctct
ttttcttccccctacctgagttttcccagactgatccagacttcagaggt
caccaacctccagccttgagcttccctcaaacctggagctcagcacatac
ttatgtcatgaacttttccccacagagacaagattaaagggagatgttaa
tattcaagcaacctcgctaaacaagcaaatcttccagggcgactatttat
tgctatttatgatgacagatcatccttctgattttccccagcacatgtct
ccagaggaaattagatacagtactttccttaagcagggccaggagaaaat
gtttctataaatacttaacaacttgtcaggggagattacaaatattggca
cgtccttcacaatgtcatgttggttattgaagctgttaaaagaaatcacg
atggtttattttcttcctgcttgaaggtagcactccatgttctgaggcca
gagaaagtgcatctggaagcagaaactctgagaccagactcaaggctaag
actcttgcctcccccagcctctgccttcatactatactggcaggagagtg
ggtctgaggtcagagagcccctatgtttcctcaataaaggactttggggg
aacccattagcttctcaccatccaggtttgttcttctgcgtgatggtgat
ccagtaatacatctcaagctattacaaaagttgaatgaaatgctatgtga
gagcagagtccataaagggcaatctccaaagagagtcctgttctcccact
tcctagacaagaaagcagttccagcccagaaaggacttgaactaaactcc
atgtttggtttccagtgtgtcaggagaaatttgacagcagaaaatgataa
tgagctctctcccacccttctcccttctctttttaccaagcacaacaacg
acacacgaagctggataccagctgatagcagtttcttactggagagataa
ttgagt
gaattcttacatatgccaggtttgtttgttgttgttgctgttgtggaaac
cttgctccttaatttaaaattattggttagtaaagatgcatgcctacagc
ctgtagctgggcagaagagaagctgggtttctgtccctgggcttgaggtc
tgaggtaagaccacaagtagaggagaaaggtgccatgggggaggagaatt
gtgagcgcatggccatgaaggccagcctgctggagcaggagcagcccagg
agggccatggcaagtgatagcttggtgttactgatagcaaagtagacaaa
ctagggttgatatcagcctggctctaatgcttaaaggctcattataaata
taaaggtttcatgtcttttatttgggaattaaatgatctgtggtgggatt
gaaacccccaaattccatctaccccaacactttactgttttgattttttt
ttccaacttggaaaactattattcatctggctttccctaccttcaacctg
aagtagccagctgaactcaggagtaggttttcagcatttgtctttgagaa
gtagcaatggcaacatctactcaccaaggattatctttggaggaggggct
ttcaggagagctttgctcagttctttattattttcagcatcttcttaaca
ttggtaatatagtcatttgatagccagaggacacagcaactgctgtcttt
acacatgagaagctatccccatgaaagcactgcaggcttctgtggaggtt
gtgtgattggagaattggaaaagaggaagtaagatggtcacagttctaga
cgggcagtgccaaggaagagtagagggaaacttcccttgtatccccagga
agttctggggtgaaaggcaggatggactcagcatcatgagataatgtgtt
gctggtcacagaaggatgggctgtactgtcaaaagctcttgtgtcacaga
gaggagtggctatggccttgaagagagctgggagccctcagggatcatga
gcatggtggttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_71386310_71387481
seq2: B6Ng01-114L13.b_46_1201

seq1  GAATTCAAGAGCAAGTGGAGCCTCCAGTTTAACCCTTTACCCCATTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGCAAGTGGAGCCTCCAGTTTAACCCTTTACCCCATTTTAC  50

seq1  AGATAAGGAAGACTGAGAGAGTGAGTCCCAGAAAGAGGAATTGAATTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGGAAGACTGAGAGAGTGAGTCCCAGAAAGAGGAATTGAATTACC  100

seq1  TTGGGGAAACTACTAAAGCCTAAATCTTGTGGCTTTCACTTTCAGCGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAAACTACTAAAGCCTAAATCTTGTGGCTTTCACTTTCAGCGTGC  150

seq1  TAGTACTTCACAACCATGCTTTCTCTTATTCCCTGGATTTTAGAGCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTTCACAACCATGCTTTCTCTTATTCCCTGGATTTTAGAGCCTCT  200

seq1  TTTTCTTCCCCCTACCTGAGTTTTCCCAGACTGATCCAGACTTCAGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCCCCTACCTGAGTTTTCCCAGACTGATCCAGACTTCAGAGGT  250

seq1  CACCAACCTCCAGCCTTGAGCTTCCCTCAAACCTGGAGCTCAGCACATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACCTCCAGCCTTGAGCTTCCCTCAAACCTGGAGCTCAGCACATAC  300

seq1  TTATGTCATGAACTTTTCCCCACAGAGACAAGATTAAAGGGAGATGTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCATGAACTTTTCCCCACAGAGACAAGATTAAAGGGAGATGTTAA  350

seq1  TATTCAAGCAACCTCGCTAAACAAGCAAATCTTCCAGGGCGACTATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAGCAACCTCGCTAAACAAGCAAATCTTCCAGGGCGACTATTTAT  400

seq1  TGCTATTTATGATGACAGATCATCCTTCTGATTTTCCCCAGCACATGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTATGATGACAGATCATCCTTCTGATTTTCCCCAGCACATGTCT  450

seq1  CCAGAGGAAATTAGATACAGTACTTTCCTTAAGCAGGGCCAGGAGAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGAAATTAGATACAGTACTTTCCTTAAGCAGGGCCAGGAGAAAAT  500

seq1  GTTTCTATAAATACTTAACAACTTGTCAGGGGAGATTACAAATATTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTATAAATACTTAACAACTTGTCAGGGGAGATTACAAATATTGGCA  550

seq1  CGTCCTTCACAATGTCATGTTGGTTATTGAAGCTGTTAAAAGAAATCACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTTCACAATGTCATGTTGGTTATTGAAGCTGTTAAAAGAAATCACG  600

seq1  ATGGTTTATTTTCTTCCTGCTTGAAGGTAGCACTCCATGTTCTGAGGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTATTTTCTTCCTGCTTGAAGGTAGCACTCCATGTTCTGAGGCCA  650

seq1  GAGAAAGTGCATCTGGAAGCAGAAACTCTGAGACCAGACTCAAGGCTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTGCATCTGGAAGCAGAAACTCTGAGACCAGACTCAAGGCTAAG  700

seq1  ACTCTTGCCTCCCCCAGCCTCTGCCTTCATACTATACTGGCAGGAGAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGCCTCCCCCAGCCTCTGCCTTCATACTATACTGGCAGGAGAGTG  750

seq1  GGTCTGAGGTCAGAGAGCCCCTATGTTTCCTCAATAAAGGACTTTGGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAGGTCAGAGAGCCCCTATGTTTCCTCAATAAAGGACTTTGGGGG  800

seq1  AACCCATTAGCTTCTCACCATCCAGGTTTGTTCTTCTGCGTGATGGTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATTAGCTTCTCACCATCCAGGTTTGTTCTTCTGCGTGATGGTGAT  850

seq1  CCAGTAATACATCTCAAGCTATTACAAAAGTTGAATGAAATGCTATGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAATACATCTCAAGCTATTACAAAAGTTGAATGAAATGCTATGTGA  900

seq1  GAGCAGAGTCCATAAAGGGCAATCTCCAAAGAGAGTCCTGTTCTCCCCAC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAGCAGAGTCCATAAAGGGCAATCTCCAAAGAGAGTCCTGTTCT-CCCAC  949

seq1  TTCCTAGACAAGAAAGCAGTTCCAAGCCCAGAAAGGACTTGAACTAAACT  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCCTAGACAAGAAAGCAGTTCC-AGCCCAGAAAGGACTTGAACTAAACT  998

seq1  CCATGTTTGGTTTCCAGTGTTGTCCAGGAGAAATTTGACAGCAAGAAAAA  1050
      ||||||||||||||||||| ||| |||||||||||||||||||   ||||
seq2  CCATGTTTGGTTTCCAGTG-TGT-CAGGAGAAATTTGACAGCA--GAAAA  1044

seq1  TGATAAATGAAGCTCTCTCCCCACCCCTTCTCCCCTCTCTCTTACACACA  1100
      |||| |||| |||||||||||   |||||||||| ||||| ||   ||  
seq2  TGAT-AATG-AGCTCTCTCCC--ACCCTTCTCCCTTCTCTTTTTACCAAG  1090

seq1  CACACACACACACACACACACACACACACACACACACACGATAGCATTTC  1150
      ||||     |||   ||||||  |     | || ||   ||||||| || 
seq2  CACA-----ACAACGACACACGAAGCTGGATAC-CAGCTGATAGCAGTTT  1134

seq1  CTAACCTGGAGAGATAA-TGAGT  1172
      || | |||||||||||| |||||
seq2  CTTA-CTGGAGAGATAATTGAGT  1156

seq1: chr11_71531602_71532616
seq2: B6Ng01-114L13.g_68_1080 (reverse)

seq1  TCAACCACCACTGCTCATGATCCCTGAGGGCTCCCAGCTCTCCTCAAGGC  50
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  TCAACCACCA-TGCTCATGATCCCTGAGGGCTCCCAGCTCTCTTCAAGGC  49

seq1  CATAGCCACTCCTCTCTTGTAGCAC-AGAGCTTTTGACAGTTGCAGCCCA  99
      |||||||||||||||| |||  ||| |||||||||||||| | |||||||
seq2  CATAGCCACTCCTCTC-TGTGACACAAGAGCTTTTGACAG-TACAGCCCA  97

seq1  TCCTTCTGTGA-CAGCCACACATGTATCTCATGATGCCTGAGTCCATCCT  148
      ||||||||||| |||| |||||| |||||||||||| |||||||||||||
seq2  TCCTTCTGTGACCAGCAACACAT-TATCTCATGATG-CTGAGTCCATCCT  145

seq1  GCCTTCCACCCCAGAACTTCCTGGGGATACAA-GGAAGTTTCCCTCTACT  197
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  GCCTTTCACCCCAGAACTTCCTGGGGATACAAGGGAAGTTTCCCTCTACT  195

seq1  CTTCCTTGGCACTGGCCGTCTAGAACTGTGACCATCTTACTTCCTCTTTT  247
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGGCACTGCCCGTCTAGAACTGTGACCATCTTACTTCCTCTTTT  245

seq1  CCAATTCTCCAATCACACAACCTCCACAGAAGCCTGCAGTGCTTTCATGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCTCCAATCACACAACCTCCACAGAAGCCTGCAGTGCTTTCATGG  295

seq1  GGATAGCTTCTCATGTGTAAAGACAGCAGTTGCTGTGTCCTCTGGCTATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCTTCTCATGTGTAAAGACAGCAGTTGCTGTGTCCTCTGGCTATC  345

seq1  AAATGACTATATTACCAATGTTAAGAAGATGCTGAAAATAATAAAGAACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTATATTACCAATGTTAAGAAGATGCTGAAAATAATAAAGAACT  395

seq1  GAGCAAAGCTCTCCTGAAAGCCCCTCCTCCAAAGATAATCCTTGGTGAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAGCTCTCCTGAAAGCCCCTCCTCCAAAGATAATCCTTGGTGAGT  445

seq1  AGATGTTGCCATTGCTACTTCTCAAAGACAAATGCTGAAAACCTACTCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTGCCATTGCTACTTCTCAAAGACAAATGCTGAAAACCTACTCCT  495

seq1  GAGTTCAGCTGGCTACTTCAGGTTGAAGGTAGGGAAAGCCAGATGAATAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAGCTGGCTACTTCAGGTTGAAGGTAGGGAAAGCCAGATGAATAA  545

seq1  TAGTTTTCCAAGTTGGAAAAAAAAATCAAAACAGTAAAGTGTTGGGGTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTCCAAGTTGGAAAAAAAAATCAAAACAGTAAAGTGTTGGGGTAG  595

seq1  ATGGAATTTGGGGGTTTCAATCCCACCACAGATCATTTAATTCCCAAATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATTTGGGGGTTTCAATCCCACCACAGATCATTTAATTCCCAAATA  645

seq1  AAAGACATGAAACCTTTATATTTATAATGAGCCTTTAAGCATTAGAGCCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATGAAACCTTTATATTTATAATGAGCCTTTAAGCATTAGAGCCA  695

seq1  GGCTGATATCAACCCTAGTTTGTCTACTTTGCTATCAGTAACACCAAGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATATCAACCCTAGTTTGTCTACTTTGCTATCAGTAACACCAAGCT  745

seq1  ATCACTTGCCATGGCCCTCCTGGGCTGCTCCTGCTCCAGCAGGCTGGCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTGCCATGGCCCTCCTGGGCTGCTCCTGCTCCAGCAGGCTGGCCT  795

seq1  TCATGGCCATGCGCTCACAATTCTCCTCCCCCATGGCACCTTTCTCCTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCCATGCGCTCACAATTCTCCTCCCCCATGGCACCTTTCTCCTCT  845

seq1  ACTTGTGGTCTTACCTCAGACCTCAAGCCCAGGGACAGAAACCCAGCTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGGTCTTACCTCAGACCTCAAGCCCAGGGACAGAAACCCAGCTTC  895

seq1  TCTTCTGCCCAGCTACAGGCTGTAGGCATGCATCTTTACTAACCAATAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCCCAGCTACAGGCTGTAGGCATGCATCTTTACTAACCAATAAT  945

seq1  TTTAAATTAAGGAGCAAGGTTTCCACAACAGCAACAACAACAAACAAACC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTAAGGAGCAAGGTTTCCACAACAGCAACAACAACAAACAAACC  995

seq1  TGGCATATGTAAGAATTC  1015
      ||||||||||||||||||
seq2  TGGCATATGTAAGAATTC  1013