BAC Information

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BAC

Clone NameB6Ng01-115C08
Chromosome11 (Build37)
Map Location 101,465,665 - 101,633,984
singlet/doubletdoublet
Overlap geneRdm1, Arl4d, LOC100038842, Dhx8, Etv4
Upstream geneDnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306
Downstream geneMeox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115C08.bB6Ng01-115C08.g
ACCDH920486DH920487
length790814
definitionDH920486|Mus musculus domesticus DNA, BAC clone: B6Ng01-115C08, 5' end.DH920487|Mus musculus domesticus DNA, BAC clone: B6Ng01-115C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,465,665 - 101,466,454)(101,633,173 - 101,633,984)
sequence
gaattccaagtttgaagtcatgcaggccaatgttaagaaatcctgcctat
aaatgaactactttttaataaagtctgggctttgcttctgtgtattgtgt
gtcaaccatgttatctttgagaaggatggaacaccagccaccaagaaacc
cattaaatcattttctgctttgtctttcacctgtagcaaaataagtctcc
agcggctcgctcagggcggctctggggagtagtcggctcccggtggccac
gcccccacggcagggcggagcatgcaaataggctggagaccatgcttctg
cgggggagaaatgcagggctcccacacgcatatgaaatttctcatgaaac
ctgaagagcgtacgaagtttgtagcagagtccagtgtttttcttggggga
agtgggggagcataggagggagacagttacgccgacgctcaccacgagtt
aaagtgagacaaagaaaggaccgcactgggcttggcactctctcccgtta
tcgcttctcggccttttggctaagatcaagtgtagtatctgttcttatca
gtttaatatctgatacgtcctctatccgaggacaatatattaaatggatt
tttggaagtaggagttggaataggagcttgctccgtccactccacgcatc
gacctggtattgcagtacttccaggaacggtgcaccccctttggggttcc
taatgttggtttaaaaaataagaactagctttatcttttgagtttactgg
tttttttttttttttttttcagatctcgttacagatggtt
gaattccattcacaaaatggaggaatgaatgaaccctccctcctgcctcc
tcccccgagaggtgtcgggtgtcagcggctcattcataggtgggagtgga
gggggcgggaaagggttggaacgtgaagcgtggctttcctaagtggagct
gggaggtttcagttctatggcgtggaacacagtagaacctgcttatacct
gaggaaaaaaacagaccagagcccactgcctcttctttaaatagatacat
cccccacctccaccccaactcttctctctctttctctctctctctctctg
tctcacacacacacacaaaggcatggaggtactaggcttggaacctgacc
tgacgaccggacatgtgcccattccgaggaagtcttaggcaaacccttcc
caacccccggagattcatctctcaccccctccttcccctgaactcacagg
aaaacagctgctccctggaatcttgggccttgagaacagcctgcctggcc
ccagctgctgccacccataccctctgcccctgccctcaaactgagggcct
cagcttgcagctccctctgggtgaacttcccctgggatttagtggcggga
aaaggatggtcactggattgcaggctagcagcaccaactccttgaatgtg
tacaggccttcctcccctgcttcacctcagccacttacaatgtcaccttt
tcttccctcccccagatgtccctggatgtgcatcaatgtacctccaccca
gaggggctttctctggaccctctccaggtgatggagtgatgggtaaggca
gcaggatcctagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101465665_101466454
seq2: B6Ng01-115C08.b_46_835

seq1  GAATTCCAAGTTTGAAGTCATGCAGGCCAATGTTAAGAAATCCTGCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTTTGAAGTCATGCAGGCCAATGTTAAGAAATCCTGCCTAT  50

seq1  AAATGAACTACTTTTTAATAAAGTCTGGGCTTTGCTTCTGTGTATTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAACTACTTTTTAATAAAGTCTGGGCTTTGCTTCTGTGTATTGTGT  100

seq1  GTCAACCATGTTATCTTTGAGAAGGATGGAACACCAGCCACCAAGAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACCATGTTATCTTTGAGAAGGATGGAACACCAGCCACCAAGAAACC  150

seq1  CATTAAATCATTTTCTGCTTTGTCTTTCACCTGTAGCAAAATAAGTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATCATTTTCTGCTTTGTCTTTCACCTGTAGCAAAATAAGTCTCC  200

seq1  AGCGGCTCGCTCAGGGCGGCTCTGGGGAGTAGTCGGCTCCCGGTGGCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGCTCGCTCAGGGCGGCTCTGGGGAGTAGTCGGCTCCCGGTGGCCAC  250

seq1  GCCCCCACGGCAGGGCGGAGCATGCAAATAGGCTGGAGACCATGCTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCACGGCAGGGCGGAGCATGCAAATAGGCTGGAGACCATGCTTCTG  300

seq1  CGGGGGAGAAATGCAGGGCTCCCACACGCATATGAAATTTCTCATGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGAGAAATGCAGGGCTCCCACACGCATATGAAATTTCTCATGAAAC  350

seq1  CTGAAGAGCGTACGAAGTTTGTAGCAGAGTCCAGTGTTTTTCTTGGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAGCGTACGAAGTTTGTAGCAGAGTCCAGTGTTTTTCTTGGGGGA  400

seq1  AGTGGGGGAGCATAGGAGGGAGACAGTTACGCCGACGCTCACCACGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGGAGCATAGGAGGGAGACAGTTACGCCGACGCTCACCACGAGTT  450

seq1  AAAGTGAGACAAAGAAAGGACCGCACTGGGCTTGGCACTCTCTCCCGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGACAAAGAAAGGACCGCACTGGGCTTGGCACTCTCTCCCGTTA  500

seq1  TCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTTCTCGGCCTTTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCA  550

seq1  GTTTAATATCTGATACGTCCTCTATCCGAGGACAATATATTAAATGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATATCTGATACGTCCTCTATCCGAGGACAATATATTAAATGGATT  600

seq1  TTTGGAAGTAGGAGTTGGAATAGGAGCTTGCTCCGTCCACTCCACGCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGTAGGAGTTGGAATAGGAGCTTGCTCCGTCCACTCCACGCATC  650

seq1  GACCTGGTATTGCAGTACTTCCAGGAACGGTGCACCCCCTTTGGGGTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGTATTGCAGTACTTCCAGGAACGGTGCACCCCCTTTGGGGTTCC  700

seq1  TAATGTTGGTTTAAAAAATAAGAACTAGCTTTATCTTTTGAGTTTACTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTGGTTTAAAAAATAAGAACTAGCTTTATCTTTTGAGTTTACTGG  750

seq1  TTTTTTTTTTTTTTTTTTTCAGATCTCGTTACAGATGGTT  790
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTCAGATCTCGTTACAGATGGTT  790

seq1: chr11_101633173_101633984
seq2: B6Ng01-115C08.g_69_882 (reverse)

seq1  AGCTAGGATCCTGCTGCCTTACCCATCACTCCATCACCTGGAGAGGGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGATCCTGCTGCCTTACCCATCACTCCATCACCTGGAGAGGGTCC  50

seq1  AGAGAA--GCCCTCTGGGTGGAGGTACATTGATGCACATCCAGGGACATC  98
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGCCCCTCTGGGTGGAGGTACATTGATGCACATCCAGGGACATC  100

seq1  TGGGGGAGGGAAGAAAAGGTGACATTGTAAGTGGCTGAGGTGAAGCAGGG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGGGAAGAAAAGGTGACATTGTAAGTGGCTGAGGTGAAGCAGGG  150

seq1  GAGGAAGGCCTGTACACATTCAAGGAGTTGGTGCTGCTAGCCTGCAATCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGCCTGTACACATTCAAGGAGTTGGTGCTGCTAGCCTGCAATCC  200

seq1  AGTGACCATCCTTTTCCCGCCACTAAATCCCAGGGGAAGTTCACCCAGAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCATCCTTTTCCCGCCACTAAATCCCAGGGGAAGTTCACCCAGAG  250

seq1  GGAGCTGCAAGCTGAGGCCCTCAGTTTGAGGGCAGGGGCAGAGGGTATGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGCAAGCTGAGGCCCTCAGTTTGAGGGCAGGGGCAGAGGGTATGG  300

seq1  GTGGCAGCAGCTGGGGCCAGGCAGGCTGTTCTCAAGGCCCAAGATTCCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGCAGCTGGGGCCAGGCAGGCTGTTCTCAAGGCCCAAGATTCCAG  350

seq1  GGAGCAGCTGTTTTCCTGTGAGTTCAGGGGAAGGAGGGGGTGAGAGATGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGCTGTTTTCCTGTGAGTTCAGGGGAAGGAGGGGGTGAGAGATGA  400

seq1  ATCTCCGGGGGTTGGGAAGGGTTTGCCTAAGACTTCCTCGGAATGGGCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCGGGGGTTGGGAAGGGTTTGCCTAAGACTTCCTCGGAATGGGCAC  450

seq1  ATGTCCGGTCGTCAGGTCAGGTTCCAAGCCTAGTACCTCCATGCCTTTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCGGTCGTCAGGTCAGGTTCCAAGCCTAGTACCTCCATGCCTTTGT  500

seq1  GTGTGTGTGTGAGACAGAGAGAGAGAGAGAGAAAGAGAGAGAAGAGTTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGAGACAGAGAGAGAGAGAGAGAAAGAGAGAGAAGAGTTGG  550

seq1  GGTGGAGGTGGGGGATGTATCTATTTAAAGAAGAGGCAGTGGGCTCTGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGGTGGGGGATGTATCTATTTAAAGAAGAGGCAGTGGGCTCTGGT  600

seq1  CTGTTTTTTTCCTCAGGTATAAGCAGGTTCTACTGTGTTCCACGCCATAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTTTCCTCAGGTATAAGCAGGTTCTACTGTGTTCCACGCCATAG  650

seq1  AACTGAAACCTCCCAGCTCCACTTAGGAAAGCCACGCTTCACGTTCCAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAACCTCCCAGCTCCACTTAGGAAAGCCACGCTTCACGTTCCAAC  700

seq1  CCTTTCCCGCCCCCTCCACTCCCACCTATGAATGAGCCGCTGACACCCGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCGCCCCCTCCACTCCCACCTATGAATGAGCCGCTGACACCCGA  750

seq1  CACCTCTCGGGGGAGGAGGCAGGAGGGAGGGTTCATTCATTCCTCCATTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTCGGGGGAGGAGGCAGGAGGGAGGGTTCATTCATTCCTCCATTT  800

seq1  TGTGAATGGAATTC  812
      ||||||||||||||
seq2  TGTGAATGGAATTC  814