BAC Information

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BAC

Clone NameB6Ng01-115F20
Chromosome11 (Build37)
Map Location 53,373,460 - 53,477,210
singlet/doubletdoublet
Overlap geneKif3a, Il4, Il13, LOC667731, Rad50
Upstream geneFstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl
Downstream geneIl5, Irf1, LOC622459, Slc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115F20.bB6Ng01-115F20.g
ACCDH920649DH920650
length327489
definitionDH920649|Mus musculus domesticus DNA, BAC clone: B6Ng01-115F20, 5' end.DH920650|Mus musculus domesticus DNA, BAC clone: B6Ng01-115F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,373,460 - 53,373,786)(53,476,716 - 53,477,210)
sequence
aattgcatcagagtggtcacacggggtggaactttaaggcaacaataggt
catggcgttttgttttagctttctcgtcactcttacagaatgcttgacat
aatagacttaaagaggaaagtatttatttctggctcactgagtcagaagg
gtcagtccatcctggtaaaaaaaaaagatcatgtgattttcctggagaaa
tatgaagaaatatctgtttaccccagatagcacactgccagcagaccgaa
aatattgcatccaagtacctctttttttcactgtttttgtttctcttctc
ttctcttctcttctcttctcttatctt
tgtccttgcttatggtacctggctccttgtttctgtgtaacatagaatac
tatgtccaggagccctcctgctgtcactcagtaaggcactgcccgcatgg
gtacatgtgcattaaagaggtcataaagactgccataacctgttctttcc
ctaaactgcctggtcggccaggggaatgccttgataccaccaggcttgtc
tggcctggggaggaagggcctttccacagaggaacgtgaggtatcacact
gagtaagcaaggaggagctgggagctctctggagccagccaggagtgggc
tgaggtgaggagatgcaggggtgctttccagaaatctagctcgcttagga
gcactgccacactgttcagtgaggtatcttatctgctaatcagattcatt
cttctaaataaggagaaatatagcagtaaaatttccttcaagtggagtct
gtggggtttctcctgcaaacagtgatgtcctaagattca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_53373460_53373786
seq2: B6Ng01-115F20.b_50_376

seq1  AATTGCATCAGAGTGGTCACACGGGGTGGAACTTTAAGGCAACAATAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCATCAGAGTGGTCACACGGGGTGGAACTTTAAGGCAACAATAGGT  50

seq1  CATGGCGTTTTGTTTTAGCTTTCTCGTCACTCTTACAGAATGCTTGACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCGTTTTGTTTTAGCTTTCTCGTCACTCTTACAGAATGCTTGACAT  100

seq1  AATAGACTTAAAGAGGAAAGTATTTATTTCTGGCTCACTGAGTCAGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACTTAAAGAGGAAAGTATTTATTTCTGGCTCACTGAGTCAGAAGG  150

seq1  GTCAGTCCATCCTGGTAAAAAAAAAAGATCATGTGATTTTCCTGGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCCATCCTGGTAAAAAAAAAAGATCATGTGATTTTCCTGGAGAAA  200

seq1  TATGAAGAAATATCTGTTTACCCCAGATAGCACACTGCCAGCAGACCGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGAAATATCTGTTTACCCCAGATAGCACACTGCCAGCAGACCGAA  250

seq1  AATATTGCATCCAAGTACCTCTTTTTTTCACTGTTTTTGTTTCTCTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGCATCCAAGTACCTCTTTTTTTCACTGTTTTTGTTTCTCTTCTC  300

seq1  TTCTCTTCTCTTCTCTTCTCTTCTCTT  327
      |||||||||||||||||||||| ||||
seq2  TTCTCTTCTCTTCTCTTCTCTTATCTT  327

seq1: chr11_53476716_53477210
seq2: B6Ng01-115F20.g_68_562 (reverse)

seq1  TGAATCTTAGGACATCACTGTTTGCAGGAGAAACCCCACAGACTCCACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTAGGACATCACTGTTTGCAGGAGAAACCCCACAGACTCCACTT  50

seq1  GAAGGAAATTTTACTGCTATTTTTCTCCTTATTTAGAAGAATGAATCTGA  100
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAAGGAAATTTTACTGCTATATTTCTCCTTATTTAGAAGAATGAATCTGA  100

seq1  TTAGCAGATAAGATACCTCACTGAACAGTGTGGCAGTGCTCCTAAGCGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGATAAGATACCTCACTGAACAGTGTGGCAGTGCTCCTAAGCGAG  150

seq1  CTAGATTTCTGGAAAGCACCCCTGCATCTCCTCACCTCAGCCCACTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTTCTGGAAAGCACCCCTGCATCTCCTCACCTCAGCCCACTCCTG  200

seq1  GCTGGCTCCAGAGAGCTCCCAGCTCCTCCTTGCTTACTCAGTGTGATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTCCAGAGAGCTCCCAGCTCCTCCTTGCTTACTCAGTGTGATACC  250

seq1  TCACGTTCCTCTGTGGAAAGGCCCTTCCTCCCCAGGCCAGACAAGCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTTCCTCTGTGGAAAGGCCCTTCCTCCCCAGGCCAGACAAGCCTGG  300

seq1  TGGTATCAAGGCATTCCCCTGGCCGACCAGGCAGTTTAGGGAAAGAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCAAGGCATTCCCCTGGCCGACCAGGCAGTTTAGGGAAAGAACAG  350

seq1  GTTATGGCAGTCTTTATGACCTCTTTAATGCACATGTACCCATGCGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGCAGTCTTTATGACCTCTTTAATGCACATGTACCCATGCGGGCA  400

seq1  GTGCCTTACTGAGTGACAGCAGGAGGGCTCCTGGACATAGTATTCTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTACTGAGTGACAGCAGGAGGGCTCCTGGACATAGTATTCTATGT  450

seq1  TACACAGAAACAAGGAGCCAGGTACCATAAGCAAGGACAGAATTC  495
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAAACAAGGAGCCAGGTACCATAAGCAAGGACAGAATTC  495