BAC Information

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BAC

Clone NameB6Ng01-115M03
Chromosome11 (Build37)
Map Location 101,282,577 - 101,397,808
singlet/doubletdoublet
Overlap gene1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1
Upstream geneFkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1
Downstream geneNbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115M03.bB6Ng01-115M03.g
ACCDH920938DH920939
length1,0841,092
definitionDH920938|Mus musculus domesticus DNA, BAC clone: B6Ng01-115M03, 5' end.DH920939|Mus musculus domesticus DNA, BAC clone: B6Ng01-115M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,282,577 - 101,283,666)(101,396,694 - 101,397,808)
sequence
gaattcactctgtagaccagccttgaacttaagagatctgcctgcttctg
cctcctgagtgctgggattaaaggtgtgcaccactattactacctcctgg
ctggttttttgtttgtttgttttaagatggctcaaaactaagagtacttg
cttctcctccaaaggattcaagttttatttccaaagctcacatcagacaa
ttcacaaccaactgtaactccagaggtccaacacacacacacacacacac
acacacacacacacacacacacacaatcttaggcatggtgaaacacacct
tcccagcactagggatcccagaagtggatctctgagtttgaggccagtct
ggtctatagagtgagttccagagctccatagttaagattctgtatcaaaa
gtaaataaataaaataataaatctctaatttctcttgtttctgctaaata
tacaatgagtcaaaaatacagtatattagcaccagcacgtggcccactga
ggaagttccaatatcccggtctgggccttgataattccccagctactgtg
tgcagtcagacgcagaatggttaagatgaccagcaggtgctgtacttcct
acctctgcataatgttccacctgagccagctccacctcatcgtctccttc
ccagtctctccagttatcgaagtccacagagagccacacaggctgtaaga
ggaagtgcagaccatcacagcagggaggacaggagcaacagtgcagggaa
agggtgggggcatgtgcatagacaaggaactcagtgtggtacagggcccc
caacctgccctccaatgtacatccacaaatgttcaccagaaacaactcag
taccaacaccaatgccaaaaatgcaggtctgaaaaagcagagttctaccc
tccaagggctgatggactggggtggtcaacacaaagcatcctaggattca
accaagcaagatgtctgagtagcagtgagctgggaattgaaactgagtcc
tatggagagtaaccactgctctaaaaactggcctctctagctgggtgtgg
tgcatacctcctttaacccagcactctgctggag
gaattcaaagaacctttacaagtactaaccacattatcttttcttttatc
tcagtgtctgtctgtctctctctcccttccttccttcctccctcccttcc
ttccctcacccccttctctctctcttaacagagtttctttgtgtagagcc
ttggctgtcctagaacttactttgtcgaccgagctggccttgaactcaga
gaaatccacctgcccctgcctcccaaatgctgggattaaaggcttgtgca
ctatgccagagtagaattatattattttaattactgtagatttgtagtga
gatacagagtttttgtttacttggtccaaaaaaacaaacctggggtttat
gtatactaggcaagcactttacatacatacacacatacacaacacacaca
cactcacacacacacacacacacacacacacacacgcatgtttgtatatg
tatgtgtgtgtatatatatatatatatatgtatgtatgtatgtatggagc
gtgcttggggtgctgagcctttaggctggtacgaccattttatattaact
acttaagcatttatatctgattatacagcatgaaataattatgaatatat
cattaaatatgctgcattaatttttttagtgttttacttgatcatagcag
taagtcatatgcaggtaagtgcaattttcataggtcatttcttatatcat
ttgattttttctgcttatgcagcatctaaaaataattactgaaaaatcat
tggttgtaatttaccctgccattactctttaaatgactcttaaaggcatt
cgtggctgttgccttttgagtgttctttctacaaaagaaaaaaaaagtaa
cttaaattggttttctttctttctctctttctaattatagattttgtatg
ctgaaacttcttaaccagaatgaaagggccttcacatgtcctttgtgtaa
gattgagatactaaagttacataatttggatatcatgggagttgaagcac
atgcagaacgtaaaattattgtcatatatttccataaacattcccaatga
aattacctatggggttgggaactaaggtgcttactagtaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101282577_101283666
seq2: B6Ng01-115M03.b_47_1130

seq1  GAATTCACTCTGTAGACCAGCCTTGAACTTAAGAGATCTGCCTGCTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGCCTTGAACTTAAGAGATCTGCCTGCTTCTG  50

seq1  CCTCCTGAGTGCTGGGATTAAAGGTGTGCACCACTATTACTACCTCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGAGTGCTGGGATTAAAGGTGTGCACCACTATTACTACCTCCTGG  100

seq1  CTGGTTTTTTGTTTGTTTGTTTTAAGATGGCTCAAAACTAAGAGTACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTTTGTTTGTTTGTTTTAAGATGGCTCAAAACTAAGAGTACTTG  150

seq1  CTTCTCCTCCAAAGGATTCAAGTTTTATTTCCAAAGCTCACATCAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTCCAAAGGATTCAAGTTTTATTTCCAAAGCTCACATCAGACAA  200

seq1  TTCACAACCAACTGTAACTCCAGAGGTCCAACACACACACACACACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAACCAACTGTAACTCCAGAGGTCCAACACACACACACACACACAC  250

seq1  ACACACACACACACACACACACACAATCTTAGGCATGGTGAAACACACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACAATCTTAGGCATGGTGAAACACACCT  300

seq1  TCCCAGCACTAGGGATCCCAGAAGTGGATCTCTGAGTTTGAGGCCAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACTAGGGATCCCAGAAGTGGATCTCTGAGTTTGAGGCCAGTCT  350

seq1  GGTCTATAGAGTGAGTTCCAGAGCTCCATAGTTAAGATTCTGTATCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTATAGAGTGAGTTCCAGAGCTCCATAGTTAAGATTCTGTATCAAAA  400

seq1  GTAAATAAATAAAATAATAAATCTCTAATTTCTCTTGTTTCTGCTAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAATAAAATAATAAATCTCTAATTTCTCTTGTTTCTGCTAAATA  450

seq1  TACAATGAGTCAAAAATACAGTATATTAGCACCAGCACGTGGCCCACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGAGTCAAAAATACAGTATATTAGCACCAGCACGTGGCCCACTGA  500

seq1  GGAAGTTCCAATATCCCGGTCTGGGCCTTGATAATTCCCCAGCTACTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTCCAATATCCCGGTCTGGGCCTTGATAATTCCCCAGCTACTGTG  550

seq1  TGCAGTCAGACGCAGAATGGTTAAGATGACCAGCAGGTGCTGTACTTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCAGACGCAGAATGGTTAAGATGACCAGCAGGTGCTGTACTTCCT  600

seq1  ACCTCTGCATAATGTTCCACCTGAGCCAGCTCCACCTCATCGTCTCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGCATAATGTTCCACCTGAGCCAGCTCCACCTCATCGTCTCCTTC  650

seq1  CCAGTCTCTCCAGTTATCGAAGTCCACAGAGAGCCACACAGGCTGTAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTCTCCAGTTATCGAAGTCCACAGAGAGCCACACAGGCTGTAAGA  700

seq1  GGAAGTGCAGACCATCACAGCAGGGAGGACAGGAGCAACAGTGCAGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGCAGACCATCACAGCAGGGAGGACAGGAGCAACAGTGCAGGGAA  750

seq1  AGGGTGGGGGCATGTGCATAGACAAGGAACTCAGTGTGGTACAGGGCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGGGCATGTGCATAGACAAGGAACTCAGTGTGGTACAGGGCCCC  800

seq1  CAACCTGCCCTCCAATGTACATCCACAAATGTTCACCAGAAACAACTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTGCCCTCCAATGTACATCCACAAATGTTCACCAGAAACAACTCAG  850

seq1  TACCAACACCAATGCCAAAAATGCAGGGTCTGAAAAAGCAGAGTTCTACC  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TACCAACACCAATGCCAAAAATGCA-GGTCTGAAAAAGCAGAGTTCTACC  899

seq1  CTCCAAGGGCTGATGGACTGGGGTGGTCAACACAAAGCATCCTAGGATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGGGCTGATGGACTGGGGTGGTCAACACAAAGCATCCTAGGATTC  949

seq1  AACCAAGCAAGATGTCTGAGTAGCAGTGAGCTGGGAATTGAAACTGAGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGCAAGATGTCTGAGTAGCAGTGAGCTGGGAATTGAAACTGAGTC  999

seq1  CTATGGAAGAGTAACCACTGCTCTTAAAAACTGGGCCTCTCTAGCTGGGT  1050
      |||||| |||||||||||||||| |||||||| |||||||||||||||||
seq2  CTATGG-AGAGTAACCACTGCTC-TAAAAACT-GGCCTCTCTAGCTGGGT  1046

seq1  GTGGTGGCATA-CTCCTTTAAACCCAGCACTCTGGCTGGAG  1090
      ||||| ||||| ||||||| ||||||||||||| |||||||
seq2  GTGGT-GCATACCTCCTTT-AACCCAGCACTCT-GCTGGAG  1084

seq1: chr11_101396694_101397808
seq2: B6Ng01-115M03.g_66_1157 (reverse)

seq1  GCCTACTTAGTAAGCACCCCTAGTCCCCAAACACATTAGTATATTTTTCT  50
      |||||| ||||||||| || |||| ||||| | |||  ||| ||||    
seq2  GCCTAC-TAGTAAGCA-CCTTAGTTCCCAACCCCATAGGTA-ATTT---C  44

seq1  ATTGGTGAATGGTTTTATAGAAATATTATTTACATATTAATTTCTACCTT  100
      ||||| |||||  ||||| |||||| |||    | | |||||| ||| ||
seq2  ATTGG-GAATG--TTTATGGAAATA-TAT---GACAATAATTT-TACGTT  86

seq1  TTCCTGCCATGTTGCTTCCAACCTCCCATGATTATACAAATTATGTACCT  150
         ||| |||| ||||||  | ||||||||| ||| ||||||||||| ||
seq2  ---CTG-CATG-TGCTTC--AACTCCCATGA-TATCCAAATTATGTAACT  128

seq1  TTTGGTTATCTCATTCTTACACAAAGGACATTGTGAAGGCCCTTTC-TTC  199
      || |  ||||||| |||||||||||||||| ||||||||||||||| |||
seq2  TTAG--TATCTCAATCTTACACAAAGGACA-TGTGAAGGCCCTTTCATTC  175

seq1  TGGTTAAGAAGTTTCAGCATACAAAATCTATAAATTAGAAAGAGAGAAAG  249
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGGTTAAGAAGTTTCAGCATACAAAATCTAT-AATTAGAAAGAGAGAAAG  224

seq1  AAAGAAAACCAATTTAAGTTACTTTTTTTTTCTTTTGTAGAAAGAACACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACCAATTTAAGTTACTTTTTTTTTCTTTTGTAGAAAGAACACT  274

seq1  CAAAAGGCAACAGCCACGAATGCCTTTAAGAGTCATTTAAAGAGTAATGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGCAACAGCCACGAATGCCTTTAAGAGTCATTTAAAGAGTAATGG  324

seq1  CA-GGTAAATTACAACCAATGATTTTTCAGTAATTATTTTTAGATGCTGC  398
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAAATTACAACCAATGATTTTTCAGTAATTATTTTTAGATGCTGC  374

seq1  ATAAGCAG-AAAAATCAAATGATATAAGAAATGACCTATGAAAATTGCAC  447
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAGAAAAAATCAAATGATATAAGAAATGACCTATGAAAATTGCAC  424

seq1  TTACCTGCATATGACTTACTGCTATGATCAAGTAAAACACTAAAAAAATT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGCATATGACTTACTGCTATGATCAAGTAAAACACTAAAAAAATT  474

seq1  AATGCAGCATATTTAATGATATATTCATAATTATTTCATGCTGTATAATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGCATATTTAATGATATATTCATAATTATTTCATGCTGTATAATC  524

seq1  AGATATAAATGCTTAAGTAGTTAATATAAAATGGTTGTATTAGTTTAAAG  597
      ||||||||||||||||||||||||||||||||||| |||  ||  |||||
seq2  AGATATAAATGCTTAAGTAGTTAATATAAAATGGTCGTACCAGCCTAAAG  574

seq1  GCTCAGCACCAAGTGCCAGATACATACATACATACATACATATATATATA  647
      ||||||||||    ||  | | ||||||||||||||||||||||||||||
seq2  GCTCAGCACCCCAAGCACGCTCCATACATACATACATACATATATATATA  624

seq1  TATATATACACACACATACATATACAAACATGCGTGTGTGTGTGTGTGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATACACACACATACATATACAAACATGCGTGTGTGTGTGTGTGTG  674

seq1  TGTGTGTGTGTGTGAGTGTGTGTGTGTTGTGTATGTGTGTATGTATGTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGAGTGTGTGTGTGTTGTGTATGTGTGTATGTATGTAA  724

seq1  AGTGCTTGCCTAGTATACATAAACCCCAGGTTTGTTTTTTTGGACCAAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGCCTAGTATACATAAACCCCAGGTTTGTTTTTTTGGACCAAGT  774

seq1  AAACAAAAACTCTGTATCTCACTACAAATCTACAGTAATTAAAATAATAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAACTCTGTATCTCACTACAAATCTACAGTAATTAAAATAATAT  824

seq1  AATTCTACTCTGGCATAGTGCACAAGCCTTTAATCCCAGCATTTGGGAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTACTCTGGCATAGTGCACAAGCCTTTAATCCCAGCATTTGGGAGG  874

seq1  CAGGGGCAGGTGGATTTCTCTGAGTTCAAGGCCAGCTCGGTCGACAAAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCAGGTGGATTTCTCTGAGTTCAAGGCCAGCTCGGTCGACAAAGT  924

seq1  AAGTTCTAGGACAGCCAAGGCTCTACACAAAGAAACTCTGTTAAGAGAGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTAGGACAGCCAAGGCTCTACACAAAGAAACTCTGTTAAGAGAGA  974

seq1  GAGAAGGGGGTGAGGGAAGGAAGGGAGGGAGGAAGGAAGGAAGGGAGAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGGGTGAGGGAAGGAAGGGAGGGAGGAAGGAAGGAAGGGAGAGA  1024

seq1  GAGACAGACAGACACTGAGATAAAAGAAAAGATAATGTGGTTAGTACTTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGACAGACACTGAGATAAAAGAAAAGATAATGTGGTTAGTACTTG  1074

seq1  TAAAGGTTCTTTGAATTC  1115
      ||||||||||||||||||
seq2  TAAAGGTTCTTTGAATTC  1092