BAC Information

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BAC

Clone NameB6Ng01-116N18
Chromosome11 (Build37)
Map Location 86,004,855 - 86,128,946
singlet/doubletdoublet
Overlap geneBrip1, Ints2, Thrap1
Upstream geneAppbp2, D630032N06Rik, Ppm1d, Bcas3, Tbx2, Tbx4, LOC668751, LOC668803
Downstream gene0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116N18.bB6Ng01-116N18.g
ACCDH921752DH921753
length1,0121,074
definitionDH921752|Mus musculus domesticus DNA, BAC clone: B6Ng01-116N18, 5' end.DH921753|Mus musculus domesticus DNA, BAC clone: B6Ng01-116N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,127,930 - 86,128,946)(86,004,855 - 86,005,936)
sequence
gaattctttagtactaagccttattgttgtagcacaatgatagatgtcac
ataaagttacataacaggttttgtttctctgttatctcagaagcatttat
gaaatataatagtttcgtacttggtaggttagaaataagagcaaggggct
ggagagatcgctcagtggttaagagcactgactgctcttctgaaaatcct
gagttaaaatcccagcaaccacatggtggctcacaaccatctgtaatgag
atctgatgccctcttctggtacatctgaagacagctacagtgtacttcga
tataataataaataaatctttaaaaaaaagaaaaaagaaataagagcaag
agattggtgtttgttgccttgtggttccctccttttccctggaatcactg
gaatggcaggaattctcaggtgacactggtcagtgtccacttttagttgt
cagagctcaaggtgtgttcctgacatctggtaggttgatattagtgatgc
tactaagtggcttttaagtgtacgtggtagtatcccacaacaaaaaaatt
acgccgcacaaagaaagggctgtgttatcttaatgtgtcttaaaagatcc
tttattataaaaagcttgcaaatagaaagccacataccaaagttacaatg
ggctttaaagtctgtataacttaatgaacttaatatagttaaaattagcg
taaaatatatttgataatgtggcttttaaagaaatttgacccctaaaact
attagcaaattaaatgggccaaatgtatgtaataattaggttctttagag
ttgtactatttggttgggcagtggtgggacatacctttaatcccagcatt
ctggaggcagaggcacatgaatcacacacaaatctctgaatatgaggcca
gcagagtgagttctagacagccgcttcataatgaaatcctgtcttgaaaa
caaacaaaaaacgaggagcggggagtgttgtgtgtgtgtgtttgagagag
agagagtgtgtg
gaattcagatgttgttttagacttgttttattatttttgatgatgtacac
acacaagagtgtaggtgcccacagaggacatgagtggtaggaactgaact
ctgctcccaggaagagcagttcttgctctaacctctgagccatcactcca
gctgccacactcagatttttaagtgggtgctgggaatcaggttctgatcc
tcatgcttgcacagcaaacatttgaacacatgaacccacaaagaggtaac
ttagctttaaaatgctttaattttaaaaataccttattgataaaagaaat
aatctgaggttttagaaaaccatggaatcaacaaatgtgttcaattaaca
gttccacagacttttgatttgagaatacaatatccacacaaagtacaata
aagtaaggtatacctgcattactgagggagggctagaggaaagggcacaa
aaatggaaaaactgctagcattatctaccacagctgatacaatgtgtgtg
ctatagcactgcattcctaagtatgaatacaacagaaaatatctgtttgt
actcatacaaatgagaaagtccatcatgctaaacaaaagtggaaacaacc
caattacctgacaactacagactagatgaatacatcctggtatattaata
caagaaaacagtttacaggaaaaagtgaaagaataaaaacaatatattct
caccaatataatatcaagtaaaagacagacataagaccacatgtaaaatt
ccacttccataaaaaagcaaagttcgtcaatggtgacagacaatgacaca
gaaaaaatatgggaaaaaagaaagaagaaaaaaaaaaggtttaacccagc
aaatatctcagtaattaaagtgagaacacaaaaagttcaagaggttttaa
gcagtcaatgttacagtaaaaatattttccagtaggacacattggtcagt
tcaaagcctatctctgacatgaatgaagcttgaagtctgtcgtcagcagc
acacagtaatataaataaaggatttcagagacgctcaggtggtaaatgca
cgtgcagtcagactgagtcaatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_86127930_86128946
seq2: B6Ng01-116N18.b_49_1060 (reverse)

seq1  CACACACTCTCTCTCTCTCAAACACACACACACAAACACTCCCCGCTCCT  50
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CACACACTCTCTCTCTCTCAAACACACACACAC-AACACTCCCCGCTCCT  49

seq1  CGTTTTTTGTTTTGTTTTTCCAAGACAGGATTTCATTATGAAGCGGCTGT  100
      ||||||||| ||||||||  ||||||||||||||||||||||||||||||
seq2  CGTTTTTTG-TTTGTTTT--CAAGACAGGATTTCATTATGAAGCGGCTGT  96

seq1  CCTAGAACTCACTCTGCTGGCCTCATATTCAGAGATTTGTGTGTGATTCA  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTAGAACTCACTCTGCTGGCCTCATATTCAGAGATTTGTGTGTGATTCA  145

seq1  TGTGCCTCTGCCTCCAGAATGCTGGGATTAAAGGTATGTCCCACCACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTCTGCCTCCAGAATGCTGGGATTAAAGGTATGTCCCACCACTGC  195

seq1  CCAACCAAATAGTACAACTCTAAAGAACCTAATTATTACATACATTTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAAATAGTACAACTCTAAAGAACCTAATTATTACATACATTTGGC  245

seq1  CCATTTAATTTGCTAATAGTTTTAGGGGTCAAATTTCTTTAAAAGCCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAATTTGCTAATAGTTTTAGGGGTCAAATTTCTTTAAAAGCCACA  295

seq1  TTATCAAATATATTTTACGCTAATTTTAACTATATTAAGTTCATTAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAATATATTTTACGCTAATTTTAACTATATTAAGTTCATTAAGTT  345

seq1  ATACAGACTTTAAAGCCCATTGTAACTTTGGTATGTGGCTTTCTATTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGACTTTAAAGCCCATTGTAACTTTGGTATGTGGCTTTCTATTTGC  395

seq1  AAGCTTTTTATAATAAAGGATCTTTTAAGACACATTAAGATAACACAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTTTATAATAAAGGATCTTTTAAGACACATTAAGATAACACAGCC  445

seq1  CTTTCTTTGTGCGGCGTAATTTTTTTGTTGTGGGATACTACCACGTACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTGTGCGGCGTAATTTTTTTGTTGTGGGATACTACCACGTACAC  495

seq1  TTAAAAGCCACTTAGTAGCATCACTAATATCAACCTACCAGATGTCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGCCACTTAGTAGCATCACTAATATCAACCTACCAGATGTCAGGA  545

seq1  ACACACCTTGAGCTCTGACAACTAAAAGTGGACACTGACCAGTGTCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCTTGAGCTCTGACAACTAAAAGTGGACACTGACCAGTGTCACCT  595

seq1  GAGAATTCCTGCCATTCCAGTGATTCCAGGGAAAAGGAGGGAACCACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTCCTGCCATTCCAGTGATTCCAGGGAAAAGGAGGGAACCACAAG  645

seq1  GCAACAAACACCAATCTCTTGCTCTTATTTCTTTTTTCTTTTTTTTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAAACACCAATCTCTTGCTCTTATTTCTTTTTTCTTTTTTTTAAAG  695

seq1  ATTTATTTATTATTATATCGAAGTACACTGTAGCTGTCTTCAGATGTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTATTATATCGAAGTACACTGTAGCTGTCTTCAGATGTACC  745

seq1  AGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGT  795

seq1  TGCTGGGATTTTAACTCAGGATTTTCAGAAGAGCAGTCAGTGCTCTTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTTTAACTCAGGATTTTCAGAAGAGCAGTCAGTGCTCTTAAC  845

seq1  CACTGAGCGATCTCTCCAGCCCCTTGCTCTTATTTCTAACCTACCAAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCGATCTCTCCAGCCCCTTGCTCTTATTTCTAACCTACCAAGTA  895

seq1  CGAAACTATTATATTTCATAAATGCTTCTGAGATAACAGAGAAACAAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAACTATTATATTTCATAAATGCTTCTGAGATAACAGAGAAACAAAAC  945

seq1  CTGTTATGTAACTTTATGTGACATCTATCATTGTGCTACAACAATAAGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATGTAACTTTATGTGACATCTATCATTGTGCTACAACAATAAGGC  995

seq1  TTAGTACTAAAGAATTC  1017
      |||||||||||||||||
seq2  TTAGTACTAAAGAATTC  1012

seq1: chr11_86004855_86005936
seq2: B6Ng01-116N18.g_66_1139

seq1  GAATTCAGATGTTGTTTTAGACTTGTTTTATTATTTTTGATGATGTACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGTTGTTTTAGACTTGTTTTATTATTTTTGATGATGTACAC  50

seq1  ACACAAGAGTGTAGGTGCCCACAGAGGACATGAGTGGTAGGAACTGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGAGTGTAGGTGCCCACAGAGGACATGAGTGGTAGGAACTGAACT  100

seq1  CTGCTCCCAGGAAGAGCAGTTCTTGCTCTAACCTCTGAGCCATCACTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCCAGGAAGAGCAGTTCTTGCTCTAACCTCTGAGCCATCACTCCA  150

seq1  GCTGCCACACTCAGATTTTTAAGTGGGTGCTGGGAATCAGGTTCTGATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCACACTCAGATTTTTAAGTGGGTGCTGGGAATCAGGTTCTGATCC  200

seq1  TCATGCTTGCACAGCAAACATTTGAACACATGAACCCACAAAGAGGTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTTGCACAGCAAACATTTGAACACATGAACCCACAAAGAGGTAAC  250

seq1  TTAGCTTTAAAATGCTTTAATTTTAAAAATACCTTATTGATAAAAGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTAAAATGCTTTAATTTTAAAAATACCTTATTGATAAAAGAAAT  300

seq1  AATCTGAGGTTTTAGAAAACCATGGAATCAACAAATGTGTTCAATTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAGGTTTTAGAAAACCATGGAATCAACAAATGTGTTCAATTAACA  350

seq1  GTTCCACAGACTTTTGATTTGAGAATACAATATCCACACAAAGTACAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACAGACTTTTGATTTGAGAATACAATATCCACACAAAGTACAATA  400

seq1  AAGTAAGGTATACCTGCATTACTGAGGGAGGGCTAGAGGAAAGGGCACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGTATACCTGCATTACTGAGGGAGGGCTAGAGGAAAGGGCACAA  450

seq1  AAATGGAAAAACTGCTAGCATTATCTACCACAGCTGATACAATGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAAAAACTGCTAGCATTATCTACCACAGCTGATACAATGTGTGTG  500

seq1  CTATAGCACTGCATTCCTAAGTATGAATACAACAGAAAATATCTGTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCACTGCATTCCTAAGTATGAATACAACAGAAAATATCTGTTTGT  550

seq1  ACTCATACAAATGAGAAAGTCCATCATGCTAAACAAAAGTGGAAACAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATACAAATGAGAAAGTCCATCATGCTAAACAAAAGTGGAAACAACC  600

seq1  CAATTACCTGACAACTACAGACTAGATGAATACATCCTGGTATATTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACCTGACAACTACAGACTAGATGAATACATCCTGGTATATTAATA  650

seq1  CAAGAAAACAGTTTACAGGAAAAAGTGAAAGAATAAAAACAATATATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAACAGTTTACAGGAAAAAGTGAAAGAATAAAAACAATATATTCT  700

seq1  CACCAATATAATATCAAGTAAAAGACAGACATAAGACCACATGTAAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATATAATATCAAGTAAAAGACAGACATAAGACCACATGTAAAATT  750

seq1  CCACTTCCATAAAAAAGCAAAGTTCGTCAATGGTGACAGACAATGACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCCATAAAAAAGCAAAGTTCGTCAATGGTGACAGACAATGACACA  800

seq1  GAAAAAATATGGGAAAAAAGAAAGAAAGAAAAAAAAAAGGTTTAACCCAG  850
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAAAAAATATGGGAAAAAAGAAAG-AAGAAAAAAAAAAGGTTTAACCCAG  849

seq1  CAAATATCTCAGTAATTAAAGTGAGAACACAAAAAGTTCAAGAGGTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATCTCAGTAATTAAAGTGAGAACACAAAAAGTTCAAGAGGTTTTA  899

seq1  AGCAGTCAATGTTACAGTAAAAATA-TTTCCAGTAGGACACATTGGTCAG  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGCAGTCAATGTTACAGTAAAAATATTTTCCAGTAGGACACATTGGTCAG  949

seq1  TTCAAAGCCTATCCTCTGACATGAATGAAGCTTGAAGTTCTGTCGTCAGC  999
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  TTCAAAGCCTAT-CTCTGACATGAATGAAGCTTGAAG-TCTGTCGTCAGC  997

seq1  AGCAACAACAGTAATATAAATTAAAGGATTTCAGAGACGCTCAGTGTGTA  1049
      ||||   ||||||||||||| |||||||||||||||||||||||   |||
seq2  AGCA--CACAGTAATATAAA-TAAAGGATTTCAGAGACGCTCAGGTGGTA  1044

seq1  AATGCACGTGCAGTCAAGACCTGAGTTCAATCC  1082
      ||||||||||||||| ||| ||||| |||||||
seq2  AATGCACGTGCAGTC-AGA-CTGAG-TCAATCC  1074