BAC Information

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BAC

Clone NameB6Ng01-117C16
Chromosome11 (Build37)
Map Location 90,996,513 - 91,138,579
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
Downstream geneEG664976, Kif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117C16.bB6Ng01-117C16.g
ACCDH921976DH921977
length1,026709
definitionDH921976|Mus musculus domesticus DNA, BAC clone: B6Ng01-117C16, 5' end.DH921977|Mus musculus domesticus DNA, BAC clone: B6Ng01-117C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,138,061 - 91,138,579)(90,996,513 - 90,997,219)
sequence
gaattctaagatgtgaataccactgtgggacaatagactgtgacaggaaa
cttggtaaggttgggtaggttcagaaaccccagaaccctcagacctgagg
acagtagatgtttcatctactctggaccagatcgctgtcctgtgaccaag
gcactccatggagggcaccatgacaatcaatcacataggagcagtgcccc
aacgctgctccacaggcagatgaggcattcttaacatctcagaccaagcc
aatagaaagcatctgctttcagaccccaacccaccctacagtgtatataa
gaccctgttgagaaggaataatttcataagaattattgcataagaattat
ttcatcaagaaccatctgagcgtgtctgtcatataagagctataacactt
ttgggagaagagagttctccctagccaatcccccctcctcatccccacac
ccctttcctctgtctccctctagctgacatactgtactgctatactggct
ctgcagcagttgggggcaacaggagagagcagaggccattttgatctgac
ttccctctcccctgtacagagtacaactcctcccttggtctctccagctg
ggcctgagccccacagatctccatggacagtgtctggtacacagactagc
acaccatgcatcactatctcatggcacagatgaaataaagcctctggttt
ctgaaagatgtaacttagtgaattttctcccttccctttacccagaaatc
ttacaactggactgttctagcacatggcaagaaccaattaaatactccag
ggagtagactgacccgctgaaagcagaggcctattatccttgacaaattc
ctgtaagaggagcttgtaaaagagaggacctctttgcttttgtgtgcaaa
gggaagtagctagaaattcaagttgacttctctaggtttatctgtttaga
ctgacttgattacctgagagtcttgttttctgggtaattacctagcaatt
ttcccaagtttgatcatagctcttat
gaattctttctttcacctcttgatacagaaacaaacgtgtcttcatttct
cttctattgctgcgataaagctttctgatgaaagcggtttgaaagagaaa
gtttagtttaggcttatggcttgagaaggacggacaacaggtggtgacag
tacggtggcagaagcagcacactgactggtcacacagcaaccacacagga
agcagagagtgagcaggaagtgaggtcagccaataatgcctcaagggcag
ccctcagctacacacatcatccagcaatctcctcattcaataccaccagt
tgaggaccaagtatttaagcacataaacctatggggggggggcatttccc
actcaaaccacatcaaaccatcttagcactcattagaaatgagcttgcct
gacccaaagttcacttgaattatttttttaaagtgagtggttgtcatggt
tgaatatgcttggcgaagggagtggcactattagaggtgtggccttgttg
gaatagatatgtcactgtaggtgtgggctttaagtccatatcctaactgt
ctgaaagtcagtattttgctagcagctttcagatgaagatgtagaactcc
cagctcctcctataccatgtctgcctgaatgttgccttgttccctccttg
atgatactggactgaacctctttaatctgtaagccagcccccaaataaat
gttgtccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_91138061_91138579
seq2: B6Ng01-117C16.b_44_562 (reverse)

seq1  TTGCCCCCAACTGCTGCAGAGCCAGTATAGCAGTACAGTATGTCAGCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCCAACTGCTGCAGAGCCAGTATAGCAGTACAGTATGTCAGCTAG  50

seq1  AGGGAGACAGAGGAAAGGGGTGTGGGGATGAGGAGGGGGGATTGGCTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACAGAGGAAAGGGGTGTGGGGATGAGGAGGGGGGATTGGCTAGG  100

seq1  GAGAACTCTCTTCTCCCAAAAGTGTTATAGCTCTTATATGACAGACACGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTCTCTTCTCCCAAAAGTGTTATAGCTCTTATATGACAGACACGC  150

seq1  TCAGATGGTTCTTGATGAAATAATTCTTATGCAATAATTCTTATGAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGGTTCTTGATGAAATAATTCTTATGCAATAATTCTTATGAAATT  200

seq1  ATTCCTTCTCAACAGGGTCTTATATACACTGTAGGGTGGGTTGGGGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTCTCAACAGGGTCTTATATACACTGTAGGGTGGGTTGGGGTCTG  250

seq1  AAAGCAGATGCTTTCTATTGGCTTGGTCTGAGATGTTAAGAATGCCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGATGCTTTCTATTGGCTTGGTCTGAGATGTTAAGAATGCCTCAT  300

seq1  CTGCCTGTGGAGCAGCGTTGGGGCACTGCTCCTATGTGATTGATTGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGTGGAGCAGCGTTGGGGCACTGCTCCTATGTGATTGATTGTCAT  350

seq1  GGTGCCCTCCATGGAGTGCCTTGGTCACAGGACAGCGATCTGGTCCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCTCCATGGAGTGCCTTGGTCACAGGACAGCGATCTGGTCCAGAG  400

seq1  TAGATGAAACATCTACTGTCCTCAGGTCTGAGGGTTCTGGGGTTTCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAAACATCTACTGTCCTCAGGTCTGAGGGTTCTGGGGTTTCTGAA  450

seq1  CCTACCCAACCTTACCAAGTTTCCTGTCACAGTCTATTGTCCCACAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCAACCTTACCAAGTTTCCTGTCACAGTCTATTGTCCCACAGTGG  500

seq1  TATTCACATCTTAGAATTC  519
      |||||||||||||||||||
seq2  TATTCACATCTTAGAATTC  519

seq1: chr11_90996513_90997219
seq2: B6Ng01-117C16.g_68_776

seq1  GAATTCTTTCTTTCACCTCTTGATACAGAAACAAACGTGTCTTCATTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTTCACCTCTTGATACAGAAACAAACGTGTCTTCATTTCT  50

seq1  CTTCTATTGCTGCGATAAAGCTTTCTGATGAAAGCGGTTTGAAAGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATTGCTGCGATAAAGCTTTCTGATGAAAGCGGTTTGAAAGAGAAA  100

seq1  GTTTAGTTTAGGCTTATGGCTTGAGAAGGACGGACAACAGGTGGTGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTTTAGGCTTATGGCTTGAGAAGGACGGACAACAGGTGGTGACAG  150

seq1  TACGGTGGCAGAAGCAGCACACTGACTGGTCACACAGCAACCACACAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGTGGCAGAAGCAGCACACTGACTGGTCACACAGCAACCACACAGGA  200

seq1  AGCAGAGAGTGAGCAGGAAGTGAGGTCAGCCAATAATGCCTCAAGGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGAGTGAGCAGGAAGTGAGGTCAGCCAATAATGCCTCAAGGGCAG  250

seq1  CCCTCAGCTACACACATCATCCAGCAATCTCCTCATTCAATACCACCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGCTACACACATCATCCAGCAATCTCCTCATTCAATACCACCAGT  300

seq1  TGAGGACCAAGTATTTAAGCACATAAACCTATGGGGGGGGGGCATTTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACCAAGTATTTAAGCACATAAACCTATGGGGGGGGGGCATTTCCC  350

seq1  ACTCAAACCACATCAAACCATCTTAGCACTCATTAGAAATGAGCTTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAACCACATCAAACCATCTTAGCACTCATTAGAAATGAGCTTGCCT  400

seq1  GACCCAAAGTTCACTTGAATTATTTTTTTAAAGTGAGTGGTTGTCATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAAAGTTCACTTGAATTATTTTTTTAAAGTGAGTGGTTGTCATGGT  450

seq1  TGAATATGCTTGGCGAAGGGAGTGGCACTATTAGAGGTGTGGCCTTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGCTTGGCGAAGGGAGTGGCACTATTAGAGGTGTGGCCTTGTTG  500

seq1  GAATAGATATGTCACTGTAGGTGTGGGCTTTAAGTCCATATCCTAACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGATATGTCACTGTAGGTGTGGGCTTTAAGTCCATATCCTAACTGT  550

seq1  CTGAAAGTCAGTATTTTGCTAGCAGCTTTCAGATGAAGATGTAGAACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTCAGTATTTTGCTAGCAGCTTTCAGATGAAGATGTAGAACTCC  600

seq1  CAGCTCCTCCTATACCATGTCTGCCTGAATGTTGCCATGTTCCCTCCTTG  650
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGCTCCTCCTATACCATGTCTGCCTGAATGTTGCCTTGTTCCCTCCTTG  650

seq1  ATGATACTGGACTGAACCTC-TTAATCTGTAAGCCAG-CCCCAAATAAAT  698
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  ATGATACTGGACTGAACCTCTTTAATCTGTAAGCCAGCCCCCAAATAAAT  700

seq1  GTTGTCCAT  707
      |||||||||
seq2  GTTGTCCAT  709