BAC Information

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BAC

Clone NameB6Ng01-117E18
Chromosome11 (Build37)
Map Location 108,969,204 - 109,159,497
singlet/doubletdoublet
Overlap geneE030025P04Rik, LOC194985, Rgs9
Upstream genePrkca, Apoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945, Axin2
Downstream gene1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b, Abca8a, Abca9, Abca6, Abca5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117E18.bB6Ng01-117E18.g
ACCDH922072DH922073
length6931,058
definitionDH922072|Mus musculus domesticus DNA, BAC clone: B6Ng01-117E18, 5' end.DH922073|Mus musculus domesticus DNA, BAC clone: B6Ng01-117E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,969,204 - 108,969,896)(109,158,438 - 109,159,497)
sequence
gaattctctttccttgcttggttttaaggaaagggttagcacatggcaga
ggccaggagggtttatcatgccccattgtgtctgtgtaattcaggtggca
gactgtgtctcctacagggggaggggggagtgtctaatgtgtctgaggat
atgtcttccttcgtgcatgtgcacacatgcacatgcatatggagaccagg
catccgtattgggtaccttcctccatcactcccttctctgtttttttggt
tttttgtttttttctttttagaaaggacctttctggagatctctgattct
gctaagctggctggccagaaagccccagggatctagatctgtctgtctcc
atctcccaagctctaggttacaggtgcacactcatgtagtctatgctaga
ctaaactcagatcttcctgcttacccagaaagcatgaaatgggctgagac
tccacagctatgagagaatgtgaccttcaaaaggatattccaggcactcc
acatcctccttaaaccaactgctataaactaacaaaacgtgggcagcctt
gagatgttcttcctacctctcataagaggtggttttggtactcactcctg
cccctttttgttacatcagtcatgttaccttggcactacgcattcaattg
ctcctatttctatacctctagcaccccagcttaccggagatgg
gctttgcatgtcggcgggtgcgagggagagtcgaggggtggagggcggta
ttctgggccctgcgcgctccgctctctgtgcctcccggtctacgcccagg
ctggggcagaccaggctggcttgtgaacttgggggtttcccctttcgctc
ccattcgtgttgtggtcgtgaattcatccagggtccagaatgacgatccg
acaccaaggccagcagtacaggccgaggatggcatttctccaaaaggtac
cctgggaatccccatctggaccctggcaagtgggcggggacccagtatgt
ggagtgtccaagggaagattgggcaggggcagagggcgtccatctaggtc
gatccgcgctgcccaattttactaaatgacttctatgtggctctatgtgt
tgtatttaaaaaccataatgattgggttttcgcgtaaactgtagtggaga
attcgaaggcagccgtgatggtctgctgcaggccaaaaacaacctgttac
tcaggagagtgcttgaagctgcgcggtgatttgagacagcctatattgtt
acaaggaatcggctattaaatgaacatttcccccaatactaaacagcagg
atttttaagtgtgtgtatgcctgtgtgtataaaaagaccaggaaaatgtg
atttgtgggatcaagagcctcccctgatcccaggatggcaatctgtgtgt
tttctgtatagttagaaccgtttcttgtcgatggctaatggccagaacag
ggtgtccgttcccgatggacatgtgggaggtggaatgtacctatggggtg
acgtgtttggggacaaagtggttcatttagttctgggcttttaagtttag
acagtttgggaagagacactcacaggattatgtctcaggtcacttgtctg
ccctacctctggctcatgccacttttcataggattatcctgtgagggaat
tagcccgatggatgttctgtgacagctgggtcctccctgccttgagcctc
tggagcttagcaactgggtgcagttggtgactaagatccctaatctaaag
atgttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_108969204_108969896
seq2: B6Ng01-117E18.b_46_738

seq1  GAATTCTCTTTCCTTGCTTGGTTTTAAGGAAAGGGTTAGCACATGGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCCTTGCTTGGTTTTAAGGAAAGGGTTAGCACATGGCAGA  50

seq1  GGCCAGGAGGGTTTATCATGCCCCATTGTGTCTGTGTAATTCAGGTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGAGGGTTTATCATGCCCCATTGTGTCTGTGTAATTCAGGTGGCA  100

seq1  GACTGTGTCTCCTACAGGGGGAGGGGGGAGTGTCTAATGTGTCTGAGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGTCTCCTACAGGGGGAGGGGGGAGTGTCTAATGTGTCTGAGGAT  150

seq1  ATGTCTTCCTTCGTGCATGTGCACACATGCACATGCATATGGAGACCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCCTTCGTGCATGTGCACACATGCACATGCATATGGAGACCAGG  200

seq1  CATCCGTATTGGGTACCTTCCTCCATCACTCCCTTCTCTGTTTTTTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGTATTGGGTACCTTCCTCCATCACTCCCTTCTCTGTTTTTTTGGT  250

seq1  TTTTTGTTTTTTTCTTTTTAGAAAGGACCTTTCTGGAGATCTCTGATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTTTCTTTTTAGAAAGGACCTTTCTGGAGATCTCTGATTCT  300

seq1  GCTAAGCTGGCTGGCCAGAAAGCCCCAGGGATCTAGATCTGTCTGTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGCTGGCTGGCCAGAAAGCCCCAGGGATCTAGATCTGTCTGTCTCC  350

seq1  ATCTCCCAAGCTCTAGGTTACAGGTGCACACTCATGTAGTCTATGCTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCAAGCTCTAGGTTACAGGTGCACACTCATGTAGTCTATGCTAGA  400

seq1  CTAAACTCAGATCTTCCTGCTTACCCAGAAAGCATGAAATGGGCTGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTCAGATCTTCCTGCTTACCCAGAAAGCATGAAATGGGCTGAGAC  450

seq1  TCCACAGCTATGAGAGAATGTGACCTTCAAAAGGATATTCCAGGCACTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGCTATGAGAGAATGTGACCTTCAAAAGGATATTCCAGGCACTCC  500

seq1  ACATCCTCCTTAAACCAACTGCTATAAACTAACAAAACGTGGGCAGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTCCTTAAACCAACTGCTATAAACTAACAAAACGTGGGCAGCCTT  550

seq1  GAGATGTTCTTCCTACCTCTCATAAGAGGTGGTTTTGGTACTCACTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTTCTTCCTACCTCTCATAAGAGGTGGTTTTGGTACTCACTCCTG  600

seq1  CCCC-TTTTGTTACATCAGTCATGTTACCTTGGCACTACGCAGTCAACTG  649
      |||| ||||||||||||||||||||||||||||||||||||| |||| ||
seq2  CCCCTTTTTGTTACATCAGTCATGTTACCTTGGCACTACGCATTCAATTG  650

seq1  CTCCTATTTCTATACCTCTAGCAACCCCAGCTTACCGGAGATGG  693
      |||||||||||||||||||||| |||||||||||||||||||||
seq2  CTCCTATTTCTATACCTCTAGC-ACCCCAGCTTACCGGAGATGG  693

seq1: chr11_109158438_109159497
seq2: B6Ng01-117E18.g_79_1136 (reverse)

seq1  TTTAACATCTTGTAGATTAGGATACTTAGTCACCAACTGCACCCAGTTGC  50
      ||||||||||| |||||||||   ||||||||||||||||||||||||||
seq2  TTTAACATCTT-TAGATTAGGGATCTTAGTCACCAACTGCACCCAGTTGC  49

seq1  TAAGCTCCAGAGGCTCAAGGCAGGGAGGGCCCAGCTTGTCACAGAACATC  100
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  TAAGCTCCAGAGGCTCAAGGCAGGGAGGACCCAGC-TGTCACAGAACATC  98

seq1  CATCGGGCTAATTCCCTCAACAGGATAATCCTATGAAAAGTGGCATGAGC  150
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CATCGGGCTAATTCCCTC-ACAGGATAATCCTATGAAAAGTGGCATGAGC  147

seq1  CAGAGGTAGGGCAGACAAGTGACCTGGGACTTAATCCTGTGAGTGTCTCT  200
      |||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  CAGAGGTAGGGCAGACAAGTGACCTGAGACATAATCCTGTGAGTGTCTCT  197

seq1  TCCCACACTGTCT-AACTTAAAAGCCCAGAACTAAATGAACCACTTTGTC  249
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCCCAAACTGTCTAAACTTAAAAGCCCAGAACTAAATGAACCACTTTGTC  247

seq1  CCCAAACACGTCACCCCATAGGTACATTCCACCTCCCACATGTCCATCGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACACGTCACCCCATAGGTACATTCCACCTCCCACATGTCCATCGG  297

seq1  GAACGGACACCCTGTTCTGGCCATTAGCCATCGACAAGAAACGGTTCTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGACACCCTGTTCTGGCCATTAGCCATCGACAAGAAACGGTTCTAA  347

seq1  CTATACAGAAAACACACAGATTGCCATCCTGGGATCAGGGGAGGCTCTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAGAAAACACACAGATTGCCATCCTGGGATCAGGGGAGGCTCTTG  397

seq1  ATCCCACAAATCACATTTTCCTGGTCTTTTTATACACACAGGCATACACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACAAATCACATTTTCCTGGTCTTTTTATACACACAGGCATACACA  447

seq1  CACTTAAAAATCCTGCTGTTTAGTATTGGGGGAAATGTTCATTTAATAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAAAATCCTGCTGTTTAGTATTGGGGGAAATGTTCATTTAATAGC  497

seq1  CGATTCCTTGTAACAATATAGGCTGTCTCAAATCACCGCGCAGCTTCAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTCCTTGTAACAATATAGGCTGTCTCAAATCACCGCGCAGCTTCAAG  547

seq1  CACTCTCCTGAGTAACAGGTTGTTTTTGGCCTGCAGCAGACCATCACGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCCTGAGTAACAGGTTGTTTTTGGCCTGCAGCAGACCATCACGGC  597

seq1  TGCCTTCGAATTCTCCACTACAGTTTACGCGAAAACCCAATCATTATGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCGAATTCTCCACTACAGTTTACGCGAAAACCCAATCATTATGGT  647

seq1  TTTTAAATACAACACATAGAGCCACATAGAAGTCATTTAGTAAAATTGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATACAACACATAGAGCCACATAGAAGTCATTTAGTAAAATTGGG  697

seq1  CAGCGCGGATCGACCTAGATGGACGCCCTCTGCCCCTGCCCAATCTTCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGCGGATCGACCTAGATGGACGCCCTCTGCCCCTGCCCAATCTTCCC  747

seq1  TTGGACACTCCACATACTGGGTCCCCGCCCACTTGCCAGGGTCCAGATGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACACTCCACATACTGGGTCCCCGCCCACTTGCCAGGGTCCAGATGG  797

seq1  GGATTCCCAGGGTACCTTTTGGAGAAATGCCATCCTCGGCCTGTACTGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCCAGGGTACCTTTTGGAGAAATGCCATCCTCGGCCTGTACTGCT  847

seq1  GGCCTTGGTGTCGGATCGTCATTCTGGACCCTGGATGAATTCACGACCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGGTGTCGGATCGTCATTCTGGACCCTGGATGAATTCACGACCAC  897

seq1  AACACGAATGGGAGCGAAAGGGGAAACCCCCAAGTTCACAAGCCAGCCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGAATGGGAGCGAAAGGGGAAACCCCCAAGTTCACAAGCCAGCCTG  947

seq1  GTCTGCCCCAGCCTGGGCGTAGACCGGGAGGCACAGAGAGCGGAGCGCGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCCCAGCCTGGGCGTAGACCGGGAGGCACAGAGAGCGGAGCGCGC  997

seq1  AGGGCCCAGAATACCGCCCTCCACCCCTCGACTCTCCCTCGCACCCGCCG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCAGAATACCGCCCTCCACCCCTCGACTCTCCCTCGCACCCGCCG  1047

seq1  ACATGCAAAGC  1060
      |||||||||||
seq2  ACATGCAAAGC  1058