BAC Information

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BAC

Clone NameB6Ng01-118A14
Chromosome11 (Build37)
Map Location 29,591,947 - 29,710,910
singlet/doubletdoublet
Overlap geneRtn4, C230094A16Rik
Upstream geneEfemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403
Downstream gene4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118A14.bB6Ng01-118A14.g
ACCDH922622DH922623
length1,162135
definitionDH922622|Mus musculus domesticus DNA, BAC clone: B6Ng01-118A14, 5' end.DH922623|Mus musculus domesticus DNA, BAC clone: B6Ng01-118A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,709,719 - 29,710,910)(29,591,947 - 29,592,081)
sequence
gaattccacttttccttaccctgcatccagacgagtgggaacagagtatc
attctcatttgcttagaacaagcattcccatctgcacaaataaagccact
caaactttggacactggttggcacttgaatttgggttgccaaagattgag
catgtaaaaattcaagaggctcaagtagatttgaagttttgataagaatt
tttttgatgtaagtccttgcaatataaatgtaaatatgcaaagccgattc
agagactgcatgagacatattagatatttttcattgcttctctgaaattc
tactttcataaaccttcctctcccttaccctagtttggggtctgtccctg
attaactgatgcagaagacactgaatcacccatctcctagcaactgcaca
gtggtgggaggaagtgggtgcggccctgtgacaccgttcctttgaatcca
gccttgcaaggagacactaaggaaatgcttattgattgtgcctcctcttc
catcctgaagaagaaatgaatattaactatattcatttctaattttattt
atattaactacatttagaacataaaaacagcctaaatgtcaaaattgtag
caattattagcaatacaatatttaatgataaagttatattatgatagtgt
tattaataataatatttcacaatacaatacaataggtaagaaaagattag
cggatagtttggtcagtgtggctttgcttttgtttctcaaaagggattcg
tgtggagaaaaagacaagtaggttgacatcaaatgtgggactacaagaga
tttggaagaacagatgtatgtatgtgtccatgcgcatgtgtgtgcatgta
catgtgtgtacaattatgtaattttgtatgtgtgtcatttttaggctcaa
acacagggccatatacctgtcaggcaagctcttcagtaatgagccatttt
ctctgcttaaattttcttcatcatatttttctaaatgtctatagtaaaca
catttctttgattggagaatagaaataaaaacctttcagtgtgagtcgtt
tctttgtagacagctgagtgcactttatttctgtatgcatagcttgagaa
tacagttgcttttagatgtttagagttgaaatagcgattctccagtcaca
accacacacatt
actttgtagaccaggctggtctcgaactcagaaatccacctgcctctgca
tcccaagtgctgggattaaaggcatgtgccaccacacctggctaccgttt
tctttaaagtgtagctttgggggggtgggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_29709719_29710910
seq2: B6Ng01-118A14.b_48_1209 (reverse)

seq1  AATGTGTGTGTGTGTGTGACTGTGAGAATCTGGCTATTTTCAACTCTAAA  50
      |||||||||| || |||||||| |||||||  |||| |||||||||||||
seq2  AATGTGTGTG-GT-TGTGACTG-GAGAATC--GCTA-TTTCAACTCTAAA  44

seq1  CATTCTAAAAAGCCAAACCTTGGTTTAATTCTCAAGCTATGGCATTACAG  100
      || ||| ||||||  |||      |  ||||||||||||| ||| |||||
seq2  CA-TCT-AAAAGC--AAC------TGTATTCTCAAGCTAT-GCA-TACAG  82

seq1  AAATAAAGTGCACCTTCAGCTGTTCTTACAAAGGAAACGACCTCACAACT  150
      |||||||||||||  ||||||||   |||||| ||||||| ||||| |||
seq2  AAATAAAGTGCAC--TCAGCTGT--CTACAAA-GAAACGA-CTCAC-ACT  125

seq1  GAAAGGTTTTTATTTCTTATTTCTCCAATTCAAAGGAAATGTGTTTACTA  200
      |||||||||||||||||   |||||||| ||||| |||||||||||||||
seq2  GAAAGGTTTTTATTTCT--ATTCTCCAA-TCAAA-GAAATGTGTTTACTA  171

seq1  TAGACATTTAGAAAATATTGATGAAGAAAATTTTAAGCAGAGAAAATGGC  250
      |||||||||||||||   |||||||||||| |||||||||||||||||||
seq2  TAGACATTTAGAAAAATATGATGAAGAAAA-TTTAAGCAGAGAAAATGGC  220

seq1  TCATTACTGAAGAGCTTGCCTGACAGGTATATGGCCCTGTGTTTGAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACTGAAGAGCTTGCCTGACAGGTATATGGCCCTGTGTTTGAGCCT  270

seq1  AAAAATGACACACATACAAAATTACATAATTGTACACACATGTACATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGACACACATACAAAATTACATAATTGTACACACATGTACATGCA  320

seq1  CACACATGCGCATGGACACATACATACATCTGTTCTTCCAAATCTCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGCGCATGGACACATACATACATCTGTTCTTCCAAATCTCTTGT  370

seq1  AGTCCCACATTTGATGTCAACCTACTTGTCTTTTTCTCCACACGAATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCACATTTGATGTCAACCTACTTGTCTTTTTCTCCACACGAATCCC  420

seq1  TTTTGAGAAACAAAAGCAAAGCCACACTGACCAAACTATCCGCTAATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGAAACAAAAGCAAAGCCACACTGACCAAACTATCCGCTAATCTT  470

seq1  TTCTTACCTATTGTATTGTATTGTGAAATATTATTATTAATAACACTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACCTATTGTATTGTATTGTGAAATATTATTATTAATAACACTATC  520

seq1  ATAATATAACTTTATCATTAAATATTGTATTGCTAATAATTGCTACAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATAACTTTATCATTAAATATTGTATTGCTAATAATTGCTACAATT  570

seq1  TTGACATTTAGGCTGTTTTTATGTTCTAAATGTAGTTAATATAAATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTTAGGCTGTTTTTATGTTCTAAATGTAGTTAATATAAATAAAA  620

seq1  TTAGAAATGAATATAGTTAATATTCATTTCTTCTTCAGGATGGAAGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATGAATATAGTTAATATTCATTTCTTCTTCAGGATGGAAGAGGA  670

seq1  GGCACAATCAATAAGCATTTCCTTAGTGTCTCCTTGCAAGGCTGGATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAATCAATAAGCATTTCCTTAGTGTCTCCTTGCAAGGCTGGATTCA  720

seq1  AAGGAACGGTGTCACAGGGCCGCACCCACTTCCTCCCACCACTGTGCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACGGTGTCACAGGGCCGCACCCACTTCCTCCCACCACTGTGCAGT  770

seq1  TGCTAGGAGATGGGTGATTCAGTGTCTTCTGCATCAGTTAATCAGGGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGAGATGGGTGATTCAGTGTCTTCTGCATCAGTTAATCAGGGACA  820

seq1  GACCCCAAACTAGGGTAAGGGAGAGGAAGGTTTATGAAAGTAGAATTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAAACTAGGGTAAGGGAGAGGAAGGTTTATGAAAGTAGAATTTCA  870

seq1  GAGAAGCAATGAAAAATATCTAATATGTCTCATGCAGTCTCTGAATCGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCAATGAAAAATATCTAATATGTCTCATGCAGTCTCTGAATCGGC  920

seq1  TTTGCATATTTACATTTATATTGCAAGGACTTACATCAAAAAAATTCTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATATTTACATTTATATTGCAAGGACTTACATCAAAAAAATTCTTA  970

seq1  TCAAAACTTCAAATCTACTTGAGCCTCTTGAATTTTTACATGCTCAATCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTTCAAATCTACTTGAGCCTCTTGAATTTTTACATGCTCAATCT  1020

seq1  TTGGCAACCCAAATTCAAGTGCCAACCAGTGTCCAAAGTTTGAGTGGCTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAACCCAAATTCAAGTGCCAACCAGTGTCCAAAGTTTGAGTGGCTT  1070

seq1  TATTTGTGCAGATGGGAATGCTTGTTCTAAGCAAATGAGAATGATACTCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGCAGATGGGAATGCTTGTTCTAAGCAAATGAGAATGATACTCT  1120

seq1  GTTCCCACTCGTCTGGATGCAGGGTAAGGAAAAGTGGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCACTCGTCTGGATGCAGGGTAAGGAAAAGTGGAATTC  1162

seq1: chr11_29591947_29592081
seq2: B6Ng01-118A14.g_74_208

seq1  ACTTTGTAGACCAGGCTGGTCTCGAACTCAGAAATCCACCTGCCTCTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTAGACCAGGCTGGTCTCGAACTCAGAAATCCACCTGCCTCTGCA  50

seq1  TCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACACCTGGCTACCGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGCTGGGATTAAAGGCATGTGCCACCACACCTGGCTACCGTTT  100

seq1  TCTTTAAAGTGTAGCTTTGGGGGGGTGGGGGTGGG  135
      |||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAGTGTAGCTTTGGGGGGGTGGGGGTGGG  135