BAC Information

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BAC

Clone NameB6Ng01-118E23
Chromosome15 (Build37)11 (Build37)
Map Location 84,729,142 - 84,730,31796,726,385 - 96,726,617
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik, Ldoc1l, Arhgap8, 3110043J09Rik, Phf21b, LOC100043084
Downstream gene4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240, Ppara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118E23.bB6Ng01-118E23.g
ACCDH922824DH922825
length1,179832
definitionDH922824|Mus musculus domesticus DNA, BAC clone: B6Ng01-118E23, 5' end.DH922825|Mus musculus domesticus DNA, BAC clone: B6Ng01-118E23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,729,142 - 84,730,317)(96,726,385 - 96,726,617)
sequence
gaattcagataccatcttcactcattctgtggtaacttaggaaaaggaga
cagaagaggatggctagctctggaggcatgtaccctgcccctcctaccgc
atcatattgacagacagggccaataaagtcaggcattgctggagccaatc
ttggctttcagtgcttggtgcagtcaccggtcttcaagaaaaatggttag
gattacagtgggtggatcgtgtgacagtattgtaggatccacctggctcc
tttccctgtcatcttcctattctctctgtgggagtccctggggccatcag
cacagagcttcaaaccagctccagaggctgacttggtctgtcttgaggct
gacacttctgtgggcctccctctgatcatgatctttgagacaccaactca
ggttacgcagacaagatgagtcgagccagataggaaggaagtagccagct
gtcagtgtgactaccttctagagacagcatcaggaatgactctcttccta
attgtttgcatgtctcaggttttctgcaatgagcacgcaaaatgataaaa
taacaatgacaccagatctcaagaagcaaattctaagcctgcaccaacct
tgtctattctagtaaaaaggctcgggtcctggcacatcgtaagtggctca
tatcaaggtggagaaacatgatgagcatgctggtgcacacctttaatccc
agcacttgggaggcagaggcaggcgggtttctgagttcaaggccagcctg
gtctacaaagtgagttccaggacagccagggctacacagagaaaccctgt
ctcgaaaaggggacggggaaaggaagcaaaactaagtctagggttttaat
ttttcacccaatatttattttatgacaatttctgagagttggttctctcg
ttccaccacgtgggtcccaggaataattcagatcatccatcggtcttggc
tgcaagcaccaaaccccacacattttattaaaaacatgcagcggtggagc
ttcaggatagagccagtcagtaacgttgcttgccttacaaacatgagaac
agagttctaaccacattaaaaaaaaagtcaggtgtagtggccttttatcc
cagcatggggaggtggagtcaggaaaccctcagtctctgggacccagcca
aggctcaccctacttggtgagattccagc
gaattccagaagctccaaagccagcgagtctggctcatgacattgtgaac
aacataagacggaccctgacccaaacccacagagaagtttgtcctcagat
ctccacagtaatgccatggatacacacacacacacacacacacacacaca
cacacacacagggacttaactggtcagtcaagctgcttcagtgtgctgct
gtctggtttgctacagaaagaactttgcacaaccagaaaggaaagaactg
ccagactcagtgagaaatgctagggtggtagaaaagacacaacaggtgtc
ccacgacaacatattgtcaccccctcacacccacacacgcccaccagaga
tgaagctaatgctttatttatttatttatttatttttggtttttcgagac
agggtttctctgtatagctctggctgtcctggaactcactttgtagacca
ggctggctttgaactcagaaatctgcctgcctctgcctcccaagtgctgg
gattaaaggcctgtgtttcgttcagccagtggctcacatgcctaggttct
agtctggaaaggcatcttggaaacctggaagagaagaggggggctaggcg
gcatgtatgcgcgcgcatgcgggggggggggggaccaagacaggcagtct
gatcaaggttcaatttttattatttctgacactccagttatgaagcaggg
gagggggcccgattcccgcccaaatcatcttggagtaaggttgcaggtga
acacgtgatagctccggaacagctgggtgcaggcagcagcagtggggagt
ggcagggacgatagggcagcaagcttctgccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_84729142_84730317
seq2: B6Ng01-118E23.b_49_1226

seq1  GAATTCAGATACCATCTTCACTCATTCTGTGGTAACTTAGGAAAAGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATACCATCTTCACTCATTCTGTGGTAACTTAGGAAAAGGAGA  50

seq1  CAGAAGAGGATGGCTAGCTCTGGAGGCATGTACCCTGCCCCTCCTACCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGATGGCTAGCTCTGGAGGCATGTACCCTGCCCCTCCTACCGC  100

seq1  ATCATATTGACAGACAGGGCCAATAAAGTCAGGCATTGCTGGAGCCAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTGACAGACAGGGCCAATAAAGTCAGGCATTGCTGGAGCCAATC  150

seq1  TTGGCTTTCAGTGCTTGGTGCAGTCACCGGTCTTCAAGAAAAATGGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTTCAGTGCTTGGTGCAGTCACCGGTCTTCAAGAAAAATGGTTAG  200

seq1  GATTACAGTGGGTGGATCGTGTGACAGTATTGTAGGATCCACCTGGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACAGTGGGTGGATCGTGTGACAGTATTGTAGGATCCACCTGGCTCC  250

seq1  TTTCCCTGTCATCTTCCTATTCTCTCTGTGGGAGTCCCTGGGGCCATCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGTCATCTTCCTATTCTCTCTGTGGGAGTCCCTGGGGCCATCAG  300

seq1  CACAGAGCTTCAAACCAGCTCCAGAGGCTGACTTGGTCTGTCTTGAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCTTCAAACCAGCTCCAGAGGCTGACTTGGTCTGTCTTGAGGCT  350

seq1  GACACTTCTGTGGGCCTCCCTCTGATCATGATCTTTGAGACACCAACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTCTGTGGGCCTCCCTCTGATCATGATCTTTGAGACACCAACTCA  400

seq1  GGTTACGCAGACAAGATGAGTCGAGCCAGATAGGAAGGAAGTAGCCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACGCAGACAAGATGAGTCGAGCCAGATAGGAAGGAAGTAGCCAGCT  450

seq1  GTCAGTGTGACTACCTTCTAGAGACAGCATCAGGAATGACTCTCTTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGTGACTACCTTCTAGAGACAGCATCAGGAATGACTCTCTTCCTA  500

seq1  ATTGTTTGCATGTCTCAGGTTTTCTGCAATGAGCACGCAAAATGATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGCATGTCTCAGGTTTTCTGCAATGAGCACGCAAAATGATAAAA  550

seq1  TAACAATGACACCAGATCTCAAGAAGCAAATTCTAAGCCTGCACCAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATGACACCAGATCTCAAGAAGCAAATTCTAAGCCTGCACCAACCT  600

seq1  TGTCTATTCTAGTAAAAAGGCTCGGGTCCTGGCACATCGTAAGTGGCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATTCTAGTAAAAAGGCTCGGGTCCTGGCACATCGTAAGTGGCTCA  650

seq1  TATCAAGGTGGAGAAACATGATGAGCATGCTGGTGCACACCTTTAATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGGTGGAGAAACATGATGAGCATGCTGGTGCACACCTTTAATCCC  700

seq1  AGCACTTGGGAGGCAGAGGCAGGCGGGTTTCTGAGTTCAAGGCCAGCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGGGAGGCAGAGGCAGGCGGGTTTCTGAGTTCAAGGCCAGCCTG  750

seq1  GTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGT  800

seq1  CTCGAAAAGGGGACGGGG-AAGGAAGCAAAACTAAGTCTAGGGTTTTAAT  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTCGAAAAGGGGACGGGGAAAGGAAGCAAAACTAAGTCTAGGGTTTTAAT  850

seq1  TTTTCACCCAATATTTATTTTATGACAATTTCTGAGAGTTGGTTCTCTCG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACCCAATATTTATTTTATGACAATTTCTGAGAGTTGGTTCTCTCG  900

seq1  TTCCACCACGTGGGTCCCAGGAATAATTCAGATCATCCATCGGTCTTGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCACGTGGGTCCCAGGAATAATTCAGATCATCCATCGGTCTTGGC  950

seq1  TGCAAGCACCAAACCCCACACATTTTATT-AAAACATGCAGCGGTGGAGC  998
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCAAGCACCAAACCCCACACATTTTATTAAAAACATGCAGCGGTGGAGC  1000

seq1  CTCAGGGATAGAGGCCAGTCAGTAACGTTGCTTGCCTTACAAACATGAGA  1048
       ||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCA-GGATAGA-GCCAGTCAGTAACGTTGCTTGCCTTACAAACATGAGA  1048

seq1  ACAGAGTTCTAACCACATTAAAAAAAAAGTCAAGTGTAGTGGCTTTTTAT  1098
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  ACAGAGTTCTAACCACATTAAAAAAAAAGTCAGGTGTAGTGGCCTTTTAT  1098

seq1  CCCAGCAGTGGGAGGTGGAGTCAGGAAAACCTCCAGGTCTCTGGGA-CCA  1147
      |||||||  ||||||||||||||||||| ||||   |||||||||| |||
seq2  CCCAGCATGGGGAGGTGGAGTCAGGAAACCCTC--AGTCTCTGGGACCCA  1146

seq1  GCCAA-GCTCA-CCTACTTGGTGAG-TTCCAG  1176
      ||||| ||||| ||||||||||||| ||||||
seq2  GCCAAGGCTCACCCTACTTGGTGAGATTCCAG  1178

seq1: chr11_96726385_96726617
seq2: B6Ng01-118E23.g_431_697 (reverse)

seq1  CCCCCCCCCCCCCGC------------ACAGG-------------CTGTT  25
      |||||||||||||||            ||| |             || ||
seq2  CCCCCCCCCCCCCGCATGCGCGCGCATACATGCCGCCTAGCCCCCCTCTT  50

seq1  CGGT----GGGGAAAAAAATATATTGGTCATAATACTAACTTTAAAATTC  71
      |  |    ||     || ||   ||   || | ||  ||| |    ||  
seq2  CTCTTCCAGGTTTCCAAGATGCCTT-TCCAGACTA-GAACCTAGGCATGT  98

seq1  TTG---CTGGGCGGTGGTGGCGTATGCCTTTAATCCCAGCACTGGGGAGG  118
        |   ||||  |   |   |  | |||||||||||||||||| ||||||
seq2  GAGCCACTGGCTGAACGAAACACAGGCCTTTAATCCCAGCACTTGGGAGG  148

seq1  CAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGA  168
      ||||||||||| ||||||||||||| | |||||||||||||||| |||||
seq2  CAGAGGCAGGCAGATTTCTGAGTTCAAAGCCAGCCTGGTCTACAAAGTGA  198

seq1  GTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACCAA  218
      |||||||||||||||| |||| ||||||||||||||||| ||||||||||
seq2  GTTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCGAAAAACCAA  248

seq1  AA--AAATAA--AAATAAA  233
      ||  ||||||  |||||||
seq2  AAATAAATAAATAAATAAA  267