BAC Information

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BAC

Clone NameB6Ng01-118N06
Chromosome11 (Build37)
Map Location 78,659,961 - 78,660,851
singlet/doubletsinglet
Overlap gene1810012P15Rik
Upstream geneMyo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik
Downstream geneNos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a, Rab11fip4, OTTMUSG00000000185
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118N06.bB6Ng01-118N06.g
ACCDH923207DH923208
length1,254888
definitionDH923207|Mus musculus domesticus DNA, BAC clone: B6Ng01-118N06, 5' end.DH923208|Mus musculus domesticus DNA, BAC clone: B6Ng01-118N06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaaacttatgttgctaagtttgccctgagatttctaactctatg
tagtagatagtaaagcctggttcctttcactatctttcttacaatactag
aggcaattctgaatgtcactgaataggcaacattcttctaatatctgaat
ttctgccttaatatttgctatatcctgccctattgctgagactactactt
ctaagacattaacctttgcctccaattttttatctatagtaagttgctct
gacaaagctatggaaatattcttatgcatatcattaacaaaatgagcagt
atgcagctgctgatctaaagctgtgataagtattgaagttaaaattgcaa
ttaaagcaataaatcttaaaattgctcatttatccttttccaagtttgca
ttcccagatttttaaaccaaggatcatttcctaactctaacaggcagcaa
aacataagcaggcctctttaacaaaatcataacagcagattccttatcta
aattaggatctacacaattagttaattgacaagaattacaatgaatatga
aaagacttgtcaagattggtgatcttaactcttaaaattatctaacagta
tagcatataggtaaggtacacaagcttttacagctataggggagttggcc
tgaatggccaaaaaacagtttctctgacgaaattttgtcaaatacactgt
agcagtccctctgcctcacaagtcatcatttttagttgtccccaagttga
caccaggtcggctctccttgctgtagcccatggcggagataggaagagtt
tcttcatcttgtttgcaaggggctgctctccctgattcctctttttctgt
gcgctcaacacagctttcttgtcaccagtgtcagagcactcaggaactca
caggccagcctatcacacgaatcattctggaagctagcatgcttctgcag
cattctgtggaaaaaaagaaaaaccccctctctcccccatattattttct
tttcaggatcatgccatgtgccaataagtggatcttttcatctcacctag
acatgatatgtctagtttaagatctataaggtatttaataaagttccttg
acatccaattccaaatccttaaaataaagatggattgaaataatgtgtcc
agggttaatttccccttcttattttttgcagagaaagagtttcatgctcc
aattcttgcctggtgtgaattataacgtgcgtgtgtgatcaaacaaatac
catc
gaattcaagatgattcaagaggaaaagttaaggacattgatttatctctc
tgcctccaaaatccagacaccaaatgaaacagagatgccaggcttttatt
agtaaatgaacctagcctggggtcataggctctttcccgagaagctgggt
ttgaccatctgtcttccagaagcaaacagccaaattcatagcaaaaatca
gaaaaagatgggaactagagagatgtcgcagtggttaacagtgcttgcgg
ctctttccagaagacctggctttggttacaacactgacaccagatgactc
acaaccacccgcaactccagttctgatgccctcttctggcccctgtgact
gcgtgtgcatatgtgcatactgtagagaattaaaaacaataaaaattaat
ctttgaaaaggagagtacagctgggttgtctctttcctgagggatcactt
ggatactgtctctcatgatatactggtttaattatgttcttctttctacc
cagttacacagcaatgaaaagcttcatgtcttccctacagacctgaatgt
ggtccaatttagggtatttggatggccttacaaaagaatcaaattaggtg
tggtggcccaggcctataacctcagcctttgggatattaaagcaggaaga
tcaaggagttcaaggctagcctgggctacacaagaccctactaaactaac
agcaaaaagaaacaaccaaactagggagtacaaggtgttttgaggacttg
ttttttgtgtgtgtgtgtgtgttatgtatgtggatgttgcccgggtgtat
gcctatgcactcttatcacttctggtgcccatagaatccagaagagacat
caaagtcctggaaatggagtttcagaacatcataatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_78659961_78660851
seq2: B6Ng01-118N06.g_69_956

seq1  GAATTCAAGATGATTCAAGAGGAAAAGTTAAGGACATTGATTTATCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATGATTCAAGAGGAAAAGTTAAGGACATTGATTTATCTCTC  50

seq1  TGCCTCCAAAATCCAGACACCAAATGAAACAGAGATGCCAGGCTTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCAAAATCCAGACACCAAATGAAACAGAGATGCCAGGCTTTTATT  100

seq1  AGTAAATGAACCTAGCCTGGGGTCATAGGCTCTTTCCCGAGAAGCTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATGAACCTAGCCTGGGGTCATAGGCTCTTTCCCGAGAAGCTGGGT  150

seq1  TTGACCATCTGTCTTCCAGAAGCAAACAGCCAAATTCATAGCAAAAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCATCTGTCTTCCAGAAGCAAACAGCCAAATTCATAGCAAAAATCA  200

seq1  GAAAAAGATGGGAACTAGAGAGATGTCGCAGTGGTTAACAGTGCTTGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGATGGGAACTAGAGAGATGTCGCAGTGGTTAACAGTGCTTGCGG  250

seq1  CTCTTTCCAGAAGACCTGGCTTTGGTTACAACACTGACACCAGATGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCAGAAGACCTGGCTTTGGTTACAACACTGACACCAGATGACTC  300

seq1  ACAACCACCCGCAACTCCAGTTCTGATGCCCTCTTCTGGCCCCTGTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCACCCGCAACTCCAGTTCTGATGCCCTCTTCTGGCCCCTGTGACT  350

seq1  GCGTGTGCATATGTGCATACTGTAGAGAATTAAAAACAATAAAAATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTGCATATGTGCATACTGTAGAGAATTAAAAACAATAAAAATTAAT  400

seq1  CTTTGAAAAGGAGAGTACAGCTGGGTTGTCTCTTTCCTGAGGGATCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAAGGAGAGTACAGCTGGGTTGTCTCTTTCCTGAGGGATCACTT  450

seq1  GGATACTGTCTCTCATGATATACTGGTTTAATTATGTTCTTCTTTCTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTGTCTCTCATGATATACTGGTTTAATTATGTTCTTCTTTCTACC  500

seq1  CAGTTACACAGCAATGAAAAGCTTCATGTCTTCCCTACAGACCTGAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACACAGCAATGAAAAGCTTCATGTCTTCCCTACAGACCTGAATGT  550

seq1  GGTCCAATTTAGGGTATTTGGATGGCCTTACAAAAGAATCAAATTAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAATTTAGGGTATTTGGATGGCCTTACAAAAGAATCAAATTAGGTG  600

seq1  TGGTGGCCCAGGCCTATAACCTCAGCCTTTGGGATATTAAAGCAGGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCCCAGGCCTATAACCTCAGCCTTTGGGATATTAAAGCAGGAAGA  650

seq1  TCAAGGAGTTCAAGGCTAGCCTGGGCTACACAAGACCCTACTAAACTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAGTTCAAGGCTAGCCTGGGCTACACAAGACCCTACTAAACTAAC  700

seq1  AGCAAAAAGAAACAACCAAACTAGGGAGTACAAGGTGTTTTGAGGACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAAGAAACAACCAAACTAGGGAGTACAAGGTGTTTTGAGGACTTG  750

seq1  TTTTTTGTGTGTGTGTGTGTGTTATGTATGTGGATGTTTGCCTGTGTGTA  800
      |||||||||||||||||||||||||||||||||||| ||||| | |||||
seq2  TTTTTTGTGTGTGTGTGTGTGTTATGTATGTGGATG-TTGCCCGGGTGTA  799

seq1  TGCCTATGCACCACTAGCACGCCTGGTGCCCATAGAAGCCAGAAGAGGAC  850
      |||||||||||   || |||  ||||||||||||||| |||||||| |||
seq2  TGCCTATGCACTCTTATCACTTCTGGTGCCCATAGAATCCAGAAGA-GAC  848

seq1  ATCAGAGTCACTGGAAATGGAGTTACAGACCATCATGATCC  891
      |||| |||| |||||||||||||| |||| |||||| ||||
seq2  ATCAAAGTC-CTGGAAATGGAGTTTCAGAACATCATAATCC  888