BAC Information

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BAC

Clone NameB6Ng01-120B05
Chromosome11 (Build37)
Map Location 60,807,371 - 60,954,767
singlet/doubletdoublet
Overlap geneKcnj12, LOC668228, Tnfrsf13b
Upstream genePemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3
Downstream geneUsp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120B05.bB6Ng01-120B05.g
ACCDH924115DH924116
length602787
definitionDH924115|Mus musculus domesticus DNA, BAC clone: B6Ng01-120B05, 5' end.DH924116|Mus musculus domesticus DNA, BAC clone: B6Ng01-120B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,807,371 - 60,807,972)(60,953,987 - 60,954,767)
sequence
gaattcttttctgtggagcaggcttccagtccaaccagaaagtgagtagt
taggcctataactaacaaaaccattagcgtgccattattgtatgggtggg
acctgtttcataagcataaatgttcccagccacctgggttggtgacacct
ttactttgtctaagcgcctgcccacactaggagctgctctactacatctg
ctttctgaacagctcctctgagggaaaggccattaccatccccagggctc
ctgtgggctgacagaagggaggcaaggcacagtcctcaaccacgcaacgg
gtgatgtcagccatggcccttacgtgcaagtgctggcaggttggtcctgt
cacagagtccaactctggataaatccactgacgagttttctcccctagcc
tacatatgaactatgaaaactagccatgggggagagagcatctcggtcaa
gctgagaatgatttctctctgtcctgcagcccaagtgtgtgcatcttcag
caataaggtcttagactctaattatgatggaaaccaaggatggtgccaat
agcccgtagtgggtttttttttttttttttttggctgggtgggggggagg
gt
gaattctgtgggacagaaaaaaaaatgctgccaggtgttctgggctcaca
ggagtttgggtgtctgaccctagactacgtcagagcgaagaaacaaaaac
aaaccaacgctatatttcagtgtgaagacagcaattccagaatggttggg
ccctctggcacatcacattctgatatctatatcattatctatatatttgt
atctatatatctgtatatctatatattcagaaaggccaggggggttctgt
gtgtgtgtgtgtgtgtgtgtgtgagaatcactcagccatcccatggcccc
agactccagaacttactgcagaagtctgtacaggtgcgctggctcctctg
gctgcaggtcagtgcacaggagacacaggatttccttgaggagtcccagt
actgatctttggggcagaatgccatagccatgcctggtcaccaatcctgt
ggaaggagagatggagaattaggacagcaggtgggcaaatgctctcctga
cccattctgagatgttctctgtttcagcaggcagagccagcgtccagccg
cagctgaggtcaggggtgacttcttcactctttaaacctctgttttctca
tttgtaaaatgttttgtctatggtctctccccttatactgttgtaccctg
actgtcccccacattgttcctctcatgtgtaccaggtctcctccccaggg
tccccgcttacgtctccctcatctttgacatctgtctaaacctcattacc
ccggaggactggttggaaccagagggctgtgaagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_60807371_60807972
seq2: B6Ng01-120B05.b_47_648

seq1  GAATTCTTTTCTGTGGAGCAGGCTTCCAGTCCAACCAGAAAGTGAGTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTGTGGAGCAGGCTTCCAGTCCAACCAGAAAGTGAGTAGT  50

seq1  TAGGCCTATAACTAACAAAACCATTAGCGTGCCATTATTGTATGGGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTATAACTAACAAAACCATTAGCGTGCCATTATTGTATGGGTGGG  100

seq1  ACCTGTTTCATAAGCATAAATGTTCCCAGCCACCTGGGTTGGTGACACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTTCATAAGCATAAATGTTCCCAGCCACCTGGGTTGGTGACACCT  150

seq1  TTACTTTGTCTAAGCGCCTGCCCACACTAGGAGCTGCTCTACTACATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTGTCTAAGCGCCTGCCCACACTAGGAGCTGCTCTACTACATCTG  200

seq1  CTTTCTGAACAGCTCCTCTGAGGGAAAGGCCATTACCATCCCCAGGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGAACAGCTCCTCTGAGGGAAAGGCCATTACCATCCCCAGGGCTC  250

seq1  CTGTGGGCTGACAGAAGGGAGGCAAGGCACAGTCCTCAACCACGCAACGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGCTGACAGAAGGGAGGCAAGGCACAGTCCTCAACCACGCAACGG  300

seq1  GTGATGTCAGCCATGGCCCTTACGTGCAAGTGCTGGCAGGTTGGTCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTCAGCCATGGCCCTTACGTGCAAGTGCTGGCAGGTTGGTCCTGT  350

seq1  CACAGAGTCCAACTCTGGATAAATCCACTGACGAGTTTTCTCCCCTAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTCCAACTCTGGATAAATCCACTGACGAGTTTTCTCCCCTAGCC  400

seq1  TACATATGAACTATGAAAACTAGCCATGGGGGAGAGAGCATCTCGGTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATGAACTATGAAAACTAGCCATGGGGGAGAGAGCATCTCGGTCAA  450

seq1  GCTGAGAATGATTTCTCTCTGTCCTGCAGCCCAAGTGTGTGCATCTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAATGATTTCTCTCTGTCCTGCAGCCCAAGTGTGTGCATCTTCAG  500

seq1  CAATAAGGTCTTAGACTCTAATTATGATGGAAACCAAGGATGGTGCCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGGTCTTAGACTCTAATTATGATGGAAACCAAGGATGGTGCCAAT  550

seq1  AGCCCGTAGTGGGTTTTTTTTTTTTTTTTTTTGGCTGGGTGGGGGGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGTAGTGGGTTTTTTTTTTTTTTTTTTTGGCTGGGTGGGGGGGAGG  600

seq1  GT  602
      ||
seq2  GT  602

seq1: chr11_60953987_60954767
seq2: B6Ng01-120B05.g_68_854 (reverse)

seq1  GTTCCTCACAGCCCTCTGGTTCCAA-CAGTCCTCCGGGGTAATGAGGTTT  49
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTTCTTCACAGCCCTCTGGTTCCAACCAGTCCTCCGGGGTAATGAGGTTT  50

seq1  AGACAGATGTCAAAGATGAGGGAGACGTAAGCGGGGACCCTGGGGAGGAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATGTCAAAGATGAGGGAGACGTAAGCGGGGACCCTGGGGAGGAG  100

seq1  ACCTGGTACACATG-GAGG-ACAATGT-GGGGACAGTCAGGGTACAACAG  146
      |||||||||||||| |||| ||||||| ||||||||||||||||||||||
seq2  ACCTGGTACACATGAGAGGAACAATGTGGGGGACAGTCAGGGTACAACAG  150

seq1  TATAA-GGGAGAGACCATAGACAAAACATTTTACAAATGAG-AAACAGAG  194
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATAAGGGGAGAGACCATAGACAAAACATTTTACAAATGAGAAAACAGAG  200

seq1  GTTTAAAGAGTGAAGAAGTCACCCCTGACCTCAGCTGCGGCTGGACGCTG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAGAGTGAAGAAGTCACCCCTGACCTCAGCTGCGGCTGGACGCTG  250

seq1  GCTCTGCCTGCTGAAACAGAGAACATCTCAGAATGGGTCAGGAGAGCATT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCTGCTGAAACAGAGAACATCTCAGAATGGGTCAGGAGAGCATT  300

seq1  TGCCCACCTGCTGTCCTAATTCTCCATCTCTCCTTCCACAGGATTGGTGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACCTGCTGTCCTAATTCTCCATCTCTCCTTCCACAGGATTGGTGA  350

seq1  CCAGGCATGGCTATGGCATTCTGCCCCAAAGATCAGTACTGGGACTCCTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCATGGCTATGGCATTCTGCCCCAAAGATCAGTACTGGGACTCCTC  400

seq1  AAGGAAATCCTGTGTCTCCTGTGCACTGACCTGCAGCCAGAGGAGCCAGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATCCTGTGTCTCCTGTGCACTGACCTGCAGCCAGAGGAGCCAGC  450

seq1  GCACCTGTACAGACTTCTGCAGTAAGTTCTGGAGTCTGGGGCCATGGGAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGTACAGACTTCTGCAGTAAGTTCTGGAGTCTGGGGCCATGGGAT  500

seq1  GGCTGAGTGATTCTCACACACACACACACACACACACACAGAACCCCCCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGTGATTCTCACACACACACACACACACACACACAGAACCCCCCT  550

seq1  GGCCTTTCTGAATATATAGATATACAGATATATAGATACAAATATATAGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTCTGAATATATAGATATACAGATATATAGATACAAATATATAGA  600

seq1  TAATGATATAGATATCAGAATGTGATGTGCCAGAGGGCCCAACCATTCTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATATAGATATCAGAATGTGATGTGCCAGAGGGCCCAACCATTCTG  650

seq1  GAATTGCTGTCTTCACACTGAAATATAGCGTTGGTTTGTTTTTGTTTCTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCTGTCTTCACACTGAAATATAGCGTTGGTTTGTTTTTGTTTCTT  700

seq1  CGCTCTGACGTAGTCTAGGGTCAGACACCCAAACTCCTGTGAGCCCAGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTGACGTAGTCTAGGGTCAGACACCCAAACTCCTGTGAGCCCAGAA  750

seq1  CACCTGGCAGCATTTTTTTTTCTGTCCCACAGAATTC  781
      |||||||||||||||||||||||||||||||||||||
seq2  CACCTGGCAGCATTTTTTTTTCTGTCCCACAGAATTC  787