BAC Information

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BAC

Clone NameB6Ng01-120D05
Chromosome11 (Build37)
Map Location 110,381,430 - 110,533,664
singlet/doubletdoublet
Overlap genenone
Upstream geneArsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b, Abca8a, Abca9, Abca6, Abca5, Map2k6
Downstream geneLOC100041523, Kcnj16, Kcnj2, LOC667003, LOC100041539, LOC100041559, EG629966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120D05.bB6Ng01-120D05.g
ACCDH924205DH924206
length1,132984
definitionDH924205|Mus musculus domesticus DNA, BAC clone: B6Ng01-120D05, 5' end.DH924206|Mus musculus domesticus DNA, BAC clone: B6Ng01-120D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,381,430 - 110,382,572)(110,532,674 - 110,533,664)
sequence
gaattctgcttttgtgagcaatagcgtcaccatgccccttgccttcctgt
agttgatacttgtgtctttctgagcttcagggtctcgttccacagatgac
tcttttgtgggatggagagcaaggacaagggcatgcactaacttgtccct
gaagcggctcactgcgtcatctgtagattaaggctgagaccaggcaccaa
ccatggttcaaatctttctttccttttgcatctcttgccactctccctct
atatgtcatagatggcttggctgcattcctatgtgagtgctttcatgtat
cgtaagtcaggaacagctctgcgacaaggagccctgtcgctctaagttct
taaaaatatcccagagaacctttagctagctcacaaaggagcaggtgtgc
ttctggcatattaaaatgtgctatattttggttgacccccctccccatat
ccctgttccccacccttgcttaagcccttctacccccagtcttttccctt
ctatttttatattatctgtttcctatcactgtctccatctctctacctta
aagcctcttttatttatttatttttttggtcctctcgtgtgcccgtctct
aatttcctgacatctatacacactccctccctaattaatgcacacatatg
aaaatgagaggccaggatgcacatctaagaggggatgtgagatctctctc
ttatcttattttcccaggttgtctcacttaatgttttctgagttccatcc
attttcctatacatttcattttttcactatggctgacccaaattccattc
atatgagtaccacagttcattatctcttcaccagttgatggctgactcca
tgtccttactactgtgatcatagcagttttaagcatggatgggcaggtac
ctctgtagaaggatgcagagtcctttgccactccttatgctttaaaagga
gcaaccggacagtcattcagttcccttaggaaatgcttatcagcaccgtc
ctacatcctgtgcactttacgggacacattcatttgtaaccatgattgtt
tctttccttatttcacaagtcaactttattgcaacactgtgttattctgg
aggagtctcttggggtctaagccaaattgact
gaattcccatctacgtaaaatacaaaagtcattgcaataaaacttgtcaa
agtttatttgaggaaataactagtagactgaaattttgtacttttctcct
tcacctagaaaaatcaaatgaaaggatatggagatacaggaatctagatc
tctacctttggggctagaaagatggctctgtggttaagagcacttgctgc
tcttgctaagggtcaaggttcagttcccagcatctacatggcagtctgca
gctgtcagctgtctctgactttggctccagaggactcaatgcactcttct
gccttctttgggcactgcaggtacatggtgaatttacatacatgcaagaa
atatacatatacatgcagacaaatatataaatgaatagatatatctccat
cttcagtttgagtttttttcttttcgtaataactttgtttactcatagag
aaaaaggaactccgtttttaaaagtccatacccaaaataactgctaaata
atcatcagataaaagtctgacataaatgtgtcattgctgcctatgttgac
aatgaggcctatatatttatgaaaaaatatatttatggaagccataccta
aaaccactctagagaagctggaaatgtagttcagtggatttctccagcat
acacaaatctgggttaatccccaacactacacaaaccaagatctggtgac
acacacctatagtagtagcactggggtcatggaagcaggaagatcagaag
accaaggtcattctcagctacataacaaattcaaacaacccctaggctac
atgagacctgtctttaaaaaaaaataaatctggaagctatccctgttctc
ataaatgtaaaaagacaacaacaataatcatctctgtgatgcacacctga
cagagaaatttaggggtgcagccaccttggctgaactcaagtacagaggg
tggacagtcagttcacccaggccatgaacaccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_110381430_110382572
seq2: B6Ng01-120D05.b_46_1177

seq1  GAATTCTGCTTTTGTGAGCAATAGCGTCACCATGCCCCTTGCCTTCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTTTGTGAGCAATAGCGTCACCATGCCCCTTGCCTTCCTGT  50

seq1  AGTTGATACTTGTGTCTTTCTGAGCTTCAGGGTCTCGTTCCACAGATGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATACTTGTGTCTTTCTGAGCTTCAGGGTCTCGTTCCACAGATGAC  100

seq1  TCTTTTGTGGGATGGAGAGCAAGGACAAGGGCATGCACTAACTTGTCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTGGGATGGAGAGCAAGGACAAGGGCATGCACTAACTTGTCCCT  150

seq1  GAAGCGGCTCACTGCGTCATCTGTAGATTAAGGCTGAGACCAGGCACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGGCTCACTGCGTCATCTGTAGATTAAGGCTGAGACCAGGCACCAA  200

seq1  CCATGGTTCAAATCTTTCTTTCCTTTTGCATCTCTTGCCACTCTCCCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTTCAAATCTTTCTTTCCTTTTGCATCTCTTGCCACTCTCCCTCT  250

seq1  ATATGTCATAGATGGCTTGGCTGCATTCCTATGTGAGTGCTTTCATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCATAGATGGCTTGGCTGCATTCCTATGTGAGTGCTTTCATGTAT  300

seq1  CGTAAGTCAGGAACAGCTCTGCGACAAGGAGCCCTGTCGCTCTAAGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGTCAGGAACAGCTCTGCGACAAGGAGCCCTGTCGCTCTAAGTTCT  350

seq1  TAAAAATATCCCAGAGAACCTTTAGCTAGCTCACAAAGGAGCAGGTGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATCCCAGAGAACCTTTAGCTAGCTCACAAAGGAGCAGGTGTGC  400

seq1  TTCTGGCATATTAAAATGTGCTATATTTTGGTTGACCCCCCTCCCCATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCATATTAAAATGTGCTATATTTTGGTTGACCCCCCTCCCCATAT  450

seq1  CCCTGTTCCCCACCCTTGCTTAAGCCCTTCTACCCCCAGTCTTTTCCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTCCCCACCCTTGCTTAAGCCCTTCTACCCCCAGTCTTTTCCCTT  500

seq1  CTATTTTTATATTATCTGTTTCCTATCACTGTCTCCATCTCTCTACCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTATATTATCTGTTTCCTATCACTGTCTCCATCTCTCTACCTTA  550

seq1  AAGCCTCTTTTATTTATTTATTTTTTTGGTCCTCTCGTGTGCCCGTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTCTTTTATTTATTTATTTTTTTGGTCCTCTCGTGTGCCCGTCTCT  600

seq1  AATTTCCTGACATCTATACACACTCCCTCCCTAATTAATGCACACATATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTGACATCTATACACACTCCCTCCCTAATTAATGCACACATATG  650

seq1  AAAATGAGAGGCCAGGATGCACATCTAAGAGGGGATGTGAGATCTCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGAGGCCAGGATGCACATCTAAGAGGGGATGTGAGATCTCTCTC  700

seq1  TTATCTTATTTTCCCAGGTTGTCTCACTTAATGTTTTCTGAGTTCCATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTATTTTCCCAGGTTGTCTCACTTAATGTTTTCTGAGTTCCATCC  750

seq1  ATTTTCCTATACATTTCATTTTTTCACTATGGCTGACCCAAATTCCATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTATACATTTCATTTTTTCACTATGGCTGACCCAAATTCCATTC  800

seq1  ATATGAGTACCACAGTTCATTATCTCTTCACCAGTTGATGGCTGACTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGTACCACAGTTCATTATCTCTTCACCAGTTGATGGCTGACTCCA  850

seq1  TGTCCTTACTACTGTGATCATAGCAGTGTTAAGCATGGATGGGCAGGTAC  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTCCTTACTACTGTGATCATAGCAGTTTTAAGCATGGATGGGCAGGTAC  900

seq1  CTCTGTAGAAGGATGCAGAGTCCTTTGCCAACCCTTATGCTTTAAAAAGG  950
      ||||||||||||||||||||||||||||||  ||||||||||| ||||||
seq2  CTCTGTAGAAGGATGCAGAGTCCTTTGCCACTCCTTATGCTTT-AAAAGG  949

seq1  AGCAACCGGACAAGTCATTCAGTTCCCTTAGGAAATGCTTATCAGCACCC  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  AGCAACCGGAC-AGTCATTCAGTTCCCTTAGGAAATGCTTATCAGCA-CC  997

seq1  GTCCTTACATCCTGTGCACTTTACGGGAGACACATTTCATTTGTAACCAT  1050
      |||| ||||||||||||||||||||||| |||   |||||||||||||||
seq2  GTCC-TACATCCTGTGCACTTTACGGGACACA---TTCATTTGTAACCAT  1043

seq1  GATTGTTTCTTTCCCTATGTCACAAGTCAACTTTATTTGCAAACCACCGT  1100
      |||||||||||||| ||| |||||||||||||||| ||||||  ||| ||
seq2  GATTGTTTCTTTCCTTATTTCACAAGTCAACTTTA-TTGCAA--CACTGT  1090

seq1  GTGTATTCTGAAGGAAGCTCTTGGGGTCAAAGCAAATATGACT  1143
      || ||||||| ||||  ||||||||||| |||| ||  |||||
seq2  GT-TATTCTGGAGGAGTCTCTTGGGGTCTAAGCCAAATTGACT  1132

seq1: chr11_110532674_110533664
seq2: B6Ng01-120D05.g_67_1050 (reverse)

seq1  TGGGTGTTCATGGCCTTGGGTGAACTGACTGTACCACCCTCTGTACTTGG  50
      ||||||||||||||| |||||||||||||||| ||||||||||||||| |
seq2  TGGGTGTTCATGGCC-TGGGTGAACTGACTGT-CCACCCTCTGTACTT-G  47

seq1  AGTCTCAGCCAAGGTTGGCTGCACCCCTAAATTTCTCTGTCAGGTGTGGC  100
      ||| |||||||||| |||||||||||||||||||||||||||||||| ||
seq2  AGT-TCAGCCAAGG-TGGCTGCACCCCTAAATTTCTCTGTCAGGTGT-GC  94

seq1  ATCACAGAGATGATTATTGTTGTTGTTCTTTTTACATTTTATGAGAACA-  149
      ||||||||||||||||||||||||| |||||||||| |||||||||||| 
seq2  ATCACAGAGATGATTATTGTTGTTG-TCTTTTTACA-TTTATGAGAACAG  142

seq1  GGATAGCTTCCAGATTTATTTTTTTTTAAAGACAGGTCTCATGTAGCCTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGCTTCCAGATTTATTTTTTTTTAAAGACAGGTCTCATGTAGCCTA  192

seq1  GGGTTGTTTTGAATTTGTTATGTAGCTGAGAATGACCTTGGTCTTCTGAT  249
      ||| |  |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGTTTGAATTTGTTATGTAGCTGAGAATGACCTTGGTCTTCTGAT  242

seq1  CTTCCTGCTTCCATGACCCCAGTGCTACTACTATAGGTGTGTGTCACCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGCTTCCATGACCCCAGTGCTACTACTATAGGTGTGTGTCACCAG  292

seq1  ATCTTGGTTTGTGTAGTGTTGGGGATTAACCCAGATTTGTGTATGCTGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGTTTGTGTAGTGTTGGGGATTAACCCAGATTTGTGTATGCTGGA  342

seq1  GAAATCCACTGAACTACATTTCCAGCTTCTCTAGAGTGGTTTTAGGTATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCACTGAACTACATTTCCAGCTTCTCTAGAGTGGTTTTAGGTATG  392

seq1  GCTTCCATAAATATATTTTTTCATAAATATATAGGCCTCATTGTCAACAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCATAAATATATTTTTTCATAAATATATAGGCCTCATTGTCAACAT  442

seq1  AGGCAGCAATGACACATTTATGTCAGACTTTTATCTGATGATTATTTAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCAATGACACATTTATGTCAGACTTTTATCTGATGATTATTTAGC  492

seq1  AGTTATTTTGGGTATGGACTTTTAAAAACGGAGTTCCTTTTTCTCTATGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTTGGGTATGGACTTTTAAAAACGGAGTTCCTTTTTCTCTATGA  542

seq1  GTAAACAAAGTTATTACGAAAAGAAAAAAACTCAAACTGAAGATGGAGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAAGTTATTACGAAAAGAAAAAAACTCAAACTGAAGATGGAGAT  592

seq1  ATATCTATTCATTTATATATTTGTCTGCATGTATATGTATATTTCTTGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATTCATTTATATATTTGTCTGCATGTATATGTATATTTCTTGCA  642

seq1  TGTATGTAAATTCACCATGTACCTGCAGTGCCCAAAGAAGGCAGAAGAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTAAATTCACCATGTACCTGCAGTGCCCAAAGAAGGCAGAAGAGT  692

seq1  GCATTGAGTCCTCTGGAGCCAAAGTCAGAGACAGCTGACAGCTGCAGACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGAGTCCTCTGGAGCCAAAGTCAGAGACAGCTGACAGCTGCAGACT  742

seq1  GCCATGTAGATGCTGGGAACTGAACCTTGACCCTTAGCAAGAGCAGCAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTAGATGCTGGGAACTGAACCTTGACCCTTAGCAAGAGCAGCAAG  792

seq1  TGCTCTTAACCACAGAGCCATCTTTCTAGCCCCAAAGGTAGAGATCTAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTAACCACAGAGCCATCTTTCTAGCCCCAAAGGTAGAGATCTAGA  842

seq1  TTCCTGTATCTCCATATCCTTTCATTTGATTTTTCTAGGTGAAGGAGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTATCTCCATATCCTTTCATTTGATTTTTCTAGGTGAAGGAGAAA  892

seq1  AGTACAAAATTTCAGTCTACTAGTTATTTCCTCAAATAAACTTTGACAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAAATTTCAGTCTACTAGTTATTTCCTCAAATAAACTTTGACAAG  942

seq1  TTTTATTGCAATGACTTTTGTATTTTACGTAGATGGGAATTC  991
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGCAATGACTTTTGTATTTTACGTAGATGGGAATTC  984