BAC Information

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BAC

Clone NameB6Ng01-120F13
Chromosome11 (Build37)
Map Location 53,477,205 - 53,636,704
singlet/doubletdoublet
Overlap geneRad50, Il5, Irf1, LOC622459
Upstream geneFstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a, Il4, Il13, LOC667731
Downstream geneSlc22a5, LOC667762, Slc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6, Cdc42se2, LOC677786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120F13.bB6Ng01-120F13.g
ACCDH924313DH924314
length1,167936
definitionDH924313|Mus musculus domesticus DNA, BAC clone: B6Ng01-120F13, 5' end.DH924314|Mus musculus domesticus DNA, BAC clone: B6Ng01-120F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,477,205 - 53,478,389)(53,636,091 - 53,636,704)
sequence
gaattcacagcagacctttaaatgcagcacaacctcccaccctgtcactg
gtcccctaggtccctcatgatcccaagttctggctccctttacagcagag
tatgttatcaacatttctctcccaccattttctcctaaaccaattccaac
tcacaactgctggcttcctagtcatacacctccaacttgtcaaattcact
ccattttgagttacaacctgtccacctcccagcttctgacccacttgtaa
actagtctatactctcctcttctctagcagtaccctttctatatggaaca
ccactccagcttcaaatgtcataggtatgtatttaatttcctgctttaat
tctttatttgaaaacctacacaaacattaatgtacccaacaaagaacttt
tccttttctctcccaaacccctcccctttcaggaatagcaacttgttccc
tgagagcccgctgcacaagtgagaacatggagaaacacccatccagcctc
cccgtccctcaacttagaagtaagctgcatcaactccatcaccgccactg
tttcccgtttctatggctacacccaagtcttctaccatccaccatctgta
gggaacagagttaaacttcaacatgggagaatggagccagacccagatta
gcacttggaaggcccaggccagcctgggtacgatgtgtacccagtaccct
atctcaaaacaaacaacaaacaagagagaggaatgtggctttctgagagt
tcaggccagcctggtctatagagggagttccaggacagctacagagaaac
cctgtctcgaaacaaacaaatgaaaacaacaaacaaaaacaaaataaaaa
ccctaaaacaaaacaaacaaacaaaagaaagaaggaggaagactatcaaa
agtatctatatacaaaaatcactgtttcatagaccaacgaacaaactata
tgaaaacaatatcatttacacagctataaatcaaatcctggaattactta
aagacgagaaagactactacaaaaaacttagaaaccagtggacagactca
agagaacccagaaaagtgaagatgggccatgttccaattctggatgggag
tggtcactccacttttcctttgctaccgaactgacgcagatttcttgcat
ctgattcaaaatccaag
gaattcacaggcagccagaactgtgtgcacagtttgtagctttcaagggc
cactgccccagcctgagtttctgagcacttagtggagagagaagaagtgg
gagaaggtgatggcagggccaggggacagagagagacacaggtagggagt
cacgactggtggtcgtacctaagactaggcacaggatcaccagtgagtgt
tgctagtcctaggcagagtcaggtctcaaacttgatcaaacagctaactg
aggtgcctatttagcatatcagacagactctggctccagggccctcggtc
catactcaggactgtgattgcctcttacagagtcatccaggctggcatat
cccactccctacccttcacctctccagcccccagacttccctttccccag
attctgattcctttatcacctcagccattttggctactcacttttggtcc
tcttagttcctttgcattctcttgacttcctgccccccactcagactact
gttggccatgttcagtctggagccttccaggtgcctctggctattctctc
cctcattatctacagtaagccttctcctcaaccatgattggtttgttttt
cagtcagcaactgtgctaggccacagcagtggtccatggccatgggctga
gacttatgcactgtaactttgaatatctagcataaaacttaaagagttga
aggaaactggccctagagtcattttcttggaggaggcgagtggagcttgt
gtctatcaggtaggttggggccctcacagcctgttgacaggggctcccag
taggctcccagccaacaaggtaggggagggggcttggttcactgcacacc
cttagaaaatgaaatgagtacatgatcgctccaaagtatcgttgagattt
ttgtttgtagataggagaaaatagtcctgccagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_53477205_53478389
seq2: B6Ng01-120F13.b_50_1216

seq1  GAATTCACAGCAGACCTTTAAATGCAGCACAACCTCCCACCCTGTCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCAGACCTTTAAATGCAGCACAACCTCCCACCCTGTCACTG  50

seq1  GTCCCCTAGGTCCCTCATGATCCCAAGTTCTGGCTCCCTTTACAGCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTAGGTCCCTCATGATCCCAAGTTCTGGCTCCCTTTACAGCAGAG  100

seq1  TATGTTATCAACATTTCTCTCCCACCATTTTCTCCTAAACCAATTCCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATCAACATTTCTCTCCCACCATTTTCTCCTAAACCAATTCCAAC  150

seq1  TCACAACTGCTGGCTTCCTAGTCATACACCTCCAACTTGTCAAATTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACTGCTGGCTTCCTAGTCATACACCTCCAACTTGTCAAATTCACT  200

seq1  CCATTTTGAGTTACAACCTGTCCACCTCCCAGCTTCTGACCCACTTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGAGTTACAACCTGTCCACCTCCCAGCTTCTGACCCACTTGTAA  250

seq1  ACTAGTCTATACTCTCCTCTTCTCTAGCAGTACCCTTTCTATATGGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTCTATACTCTCCTCTTCTCTAGCAGTACCCTTTCTATATGGAACA  300

seq1  CCACTCCAGCTTCAAATGTCATAGGTATGTATTTAATTTCCTGCTTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCAGCTTCAAATGTCATAGGTATGTATTTAATTTCCTGCTTTAAT  350

seq1  TCTTTATTTGAAAACCTACACAAACATTAATGTACCCAACAAAGAACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTTGAAAACCTACACAAACATTAATGTACCCAACAAAGAACTTT  400

seq1  TCCTTTTCTCTCCCAAACCCCTCCCCTTTCAGGAATAGCAACTTGTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTCTCCCAAACCCCTCCCCTTTCAGGAATAGCAACTTGTTCCC  450

seq1  TGAGAGCCCGCTGCACAAGTGAGAACATGGAGAAACACCCATCCAGCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCCCGCTGCACAAGTGAGAACATGGAGAAACACCCATCCAGCCTC  500

seq1  CCCGTCCCTCAACTTAGAAGTAAGCTGCATCAACTCCATCACCGCCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCCCTCAACTTAGAAGTAAGCTGCATCAACTCCATCACCGCCACTG  550

seq1  TTTCCCGTTTCTATGGCTACACCCAAGTCTTCTACCATCCACCATCTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCGTTTCTATGGCTACACCCAAGTCTTCTACCATCCACCATCTGTA  600

seq1  GGGAACAGAGTTAAACTTCAACATGGGAGAATGGAGCCAGACCCAGATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAGAGTTAAACTTCAACATGGGAGAATGGAGCCAGACCCAGATTA  650

seq1  GCACTTGGAAGGCCCAGGCCAGCCTGGGTACGATGTGTACCCAGTACCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGGAAGGCCCAGGCCAGCCTGGGTACGATGTGTACCCAGTACCCT  700

seq1  ATCTCAAAACAAACAACAAACAAGAGAGAGGAATGTGGCTTTCTGAGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAAACAAACAACAAACAAGAGAGAGGAATGTGGCTTTCTGAGAGT  750

seq1  TCAGGCCAGCCTGGTCTATAGAGGGAGTTCCAGGACAGCTACAGAGAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCCAGCCTGGTCTATAGAGGGAGTTCCAGGACAGCTACAGAGAAAC  800

seq1  CCTGTCTCGAAACAAACAAATGAAAACAACAAAACAAAAACAAAATAAAA  850
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  CCTGTCTCGAAACAAACAAATGAAAACAAC-AAACAAAAACAAAAT-AAA  848

seq1  AACCCTAAAACAAAACAAACAAACAAAAAGAAAGAAGGAAGGAAGACTAT  900
      |||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  AACCCTAAAACAAAACAAACAAAC-AAAAGAAAGAAGG-AGGAAGACTAT  896

seq1  CAAAAGTATCTATATACAAAAAATCACTGTTTTCATAGACCAACG-ACAA  949
      ||||||||||||||||| ||||||||||| ||||||||||||||| ||||
seq2  CAAAAGTATCTATATAC-AAAAATCACTG-TTTCATAGACCAACGAACAA  944

seq1  ACTATATGAAAACAATATCATTTACAACAGCTATAAAATCAAAATCCTGG  999
      ||||||||||||||||||||||||| |||||||| ||||| ||||||| |
seq2  ACTATATGAAAACAATATCATTTAC-ACAGCTAT-AAATC-AAATCCT-G  990

seq1  GAATTACTTAAAGACGAGAAAGACTACTACAAAAAAACTTAAGAAACCAG  1049
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  GAATTACTTAAAGACGAGAAAGACTACTAC-AAAAAACTT-AGAAACCAG  1038

seq1  T-GACAGACTCAAAGAGAACACAGAAAAGTTGAAAGATGGCCCATGTCCA  1098
      | ||||||||| |||||||| |||||||||   ||||||| |||||| | 
seq2  TGGACAGACTC-AAGAGAACCCAGAAAAGT--GAAGATGGGCCATGTTCC  1085

seq1  CATTCATGGAATGGGAGT-GTCACTCACCTGTCCCCTTGCTACCCAAACT  1147
       |||| ||| |||||||| |||||||  || | || |||||| || ||||
seq2  AATTC-TGG-ATGGGAGTGGTCACTCCACTTTTCCTTTGCTA-CCGAACT  1132

seq1  GACCGCAGATTTCATGCAATCCATATCAAAATACCAAG  1185
      || |||||||||| ||| |||    ||||||| |||||
seq2  GA-CGCAGATTTCTTGC-ATCTGATTCAAAAT-CCAAG  1167

seq1: chr11_53636091_53636704
seq2: B6Ng01-120F13.g_68_681 (reverse)

seq1  ACAGTTGCTGACTGAAAAACAAACCAATCATGGTTGAGGAGAAGGCTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGCTGACTGAAAAACAAACCAATCATGGTTGAGGAGAAGGCTTAC  50

seq1  TGTAGATAATGAGGGAGAGAATAGCCAGAGGCACCTGGAAGGCTCCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATAATGAGGGAGAGAATAGCCAGAGGCACCTGGAAGGCTCCAGAC  100

seq1  TGAACATGGCCAACAGTAGTCTGAGTGGGGGGCAGGAAGTCAAGAGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATGGCCAACAGTAGTCTGAGTGGGGGGCAGGAAGTCAAGAGAATG  150

seq1  CAAAGGAACTAAGAGGACCAAAAGTGAGTAGCCAAAATGGCTGAGGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAACTAAGAGGACCAAAAGTGAGTAGCCAAAATGGCTGAGGTGAT  200

seq1  AAAGGAATCAGAATCTGGGGAAAGGGAAGTCTGGGGGCTGGAGAGGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATCAGAATCTGGGGAAAGGGAAGTCTGGGGGCTGGAGAGGTGAA  250

seq1  GGGTAGGGAGTGGGATATGCCAGCCTGGATGACTCTGTAAGAGGCAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGGAGTGGGATATGCCAGCCTGGATGACTCTGTAAGAGGCAATCA  300

seq1  CAGTCCTGAGTATGGACCGAGGGCCCTGGAGCCAGAGTCTGTCTGATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTGAGTATGGACCGAGGGCCCTGGAGCCAGAGTCTGTCTGATATG  350

seq1  CTAAATAGGCACCTCAGTTAGCTGTTTGATCAAGTTTGAGACCTGACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAGGCACCTCAGTTAGCTGTTTGATCAAGTTTGAGACCTGACTCT  400

seq1  GCCTAGGACTAGCAACACTCACTGGTGATCCTGTGCCTAGTCTTAGGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGACTAGCAACACTCACTGGTGATCCTGTGCCTAGTCTTAGGTAC  450

seq1  GACCACCAGTCGTGACTCCCTACCTGTGTCTCTCTCTGTCCCCTGGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACCAGTCGTGACTCCCTACCTGTGTCTCTCTCTGTCCCCTGGCCCT  500

seq1  GCCATCACCTTCTCCCACTTCTTCTCTCTCCACTAAGTGCTCAGAAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCACCTTCTCCCACTTCTTCTCTCTCCACTAAGTGCTCAGAAACTC  550

seq1  AGGCTGGGGCAGTGGCCCTTGAAAGCTACAAACTGTGCACACAGTTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGGGCAGTGGCCCTTGAAAGCTACAAACTGTGCACACAGTTCTGG  600

seq1  CTGCCTGTGAATTC  614
      ||||||||||||||
seq2  CTGCCTGTGAATTC  614