BAC Information

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BAC

Clone NameB6Ng01-120K18
Chromosome11 (Build37)
Map Location 71,577,824 - 71,578,961
singlet/doubletsinglet
Overlap geneWscd1
Upstream geneLOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik
Downstream geneAipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120K18.bB6Ng01-120K18.g
ACCDH924557DH924558
length7981,108
definitionDH924557|Mus musculus domesticus DNA, BAC clone: B6Ng01-120K18, 5' end.DH924558|Mus musculus domesticus DNA, BAC clone: B6Ng01-120K18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtaataacccccacttccctaccccaccctccaccctgcaaaa
aagtaacagcctaaaagagaagccatcaaagagaagtcttaaaaattgtg
atagggatgccgaagtgtagctcccacaactgatggcttccggcaggggt
aaagggtggagaaggacttagctttctttagagtgcaggctactgggagt
ttgatcatgctccaatgtgtatataggcaacttgattttgttgttgttgt
tgttttgttgggggtgggacacaagggtttaggggggcatacatggaagg
actgggaagtgagtgtgattggggtgtataaggtgaaattcccaaagaat
caataaaaatatcttgaaaaaaaaatcagtgatagtcctgagagagtctt
taagagattctcaaaacttccctctgcgacttcacaagcctggccacagt
catgtgtgttgttctcagcaatgtcttctaactatccacggtagttcatt
aacttctaaacacataccagcgtttccagccccaagttcaaaagactacc
acaatctttccaaaagtatacgatcaaatatgtcacaaaaatatctcatg
aactgtaccaattactatcttagttttggacttttagagctgtgataaaa
ggaaaaccattgaccagaagcaaacttggggggaaaggttgtttatttga
tcttttaatctcagtcatactcactctatcactaagggatgccagggcaa
gaactcaacattggaaacctgtaagtaggagctgatacagaggttgtg
gaattctcacaacctccggcttctggaattgataccgtgtccccattttg
tagatggggagcctgcatcttagagagggggacctgcacatctcaggtta
cataggcctgtcctggcagagcaggaatttgaatctccactatctcattc
tcagaaatagggacgctccatcccagctttggcaaggctgaccaagcctt
ttgagccttgtccctccttgtgtttggactgtttagttgaaagctatgat
gggctttttttctgtatcaaccaacacattggaaatttctcagacactgc
ttttcttttgcaaagtagatgggcagagaataattcatgcctactgctct
cggtgggtttttttctgcagccatatataatggattcaagggcattgaga
ctcatgaaagggagagagagtttacagagatccataccagggaagcagcc
tcccacctgggagcaggtgcctgtgcttagcacacctgtattgatgctca
accctccatggaggtgacctcaggaggcatggagtttagaagggaccata
tggaagaaggtgactgttgccttcctcttactggcgtcttctgacctgag
ataccctggagccctgggtggtgcaacatcctgttctcatggttgtcatc
tgatctaggaattcagacccctgagactcggatcagggtgtagccagctg
gtccaccctccttgtggaagggctcctctgctcttacacccaagccttgg
actaccagtctggtttgtaggagctgtgacccagtttccagataagtgat
taacaatgatattgtgtctaaccctgatgagtccctttggagtaagatat
gtccctaccctctaggagctaaagtttagaagatttttacagcagttgat
ggctgggatgtggctgactattccagtaattagctgcttgtttttttaga
cacatttagagttcctgagaccctgggggaagctgagtgtaggaagattc
cgacttaggaagatgaagctctggcaatgaaaggaggaactgacctcaaa
gcaatgcccaatgccttactacagtgggagaactgaggcatgcaattgaa
tattcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_71577824_71578961
seq2: B6Ng01-120K18.g_65_1172

seq1  GAATTCTCACAACCTCCGGCTTCTGGAATTGATACCGTGTCCCCATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACAACCTCCGGCTTCTGGAATTGATACCGTGTCCCCATTTTG  50

seq1  TAGATGGGGAGCCTGCATCTTAGAGAGGGGGACCTGCACATCTCAGGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGGGAGCCTGCATCTTAGAGAGGGGGACCTGCACATCTCAGGTTA  100

seq1  CATAGGCCTGTCCTGGCAGAGCAGGAATTTGAATCTCCACTATCTCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCCTGTCCTGGCAGAGCAGGAATTTGAATCTCCACTATCTCATTC  150

seq1  TCAGAAATAGGGACGCTCCATCCCAGCTTTGGCAAGGCTGACCAAGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATAGGGACGCTCCATCCCAGCTTTGGCAAGGCTGACCAAGCCTT  200

seq1  TTGAGCCTTGTCCCTCCTTGTGTTTGGACTGTTTAGTTGAAAGCTATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCTTGTCCCTCCTTGTGTTTGGACTGTTTAGTTGAAAGCTATGAT  250

seq1  GGGCTTTTTTTCTGTATCAACCAACACATTGGAAATTTCTCAGACACTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTTTTTCTGTATCAACCAACACATTGGAAATTTCTCAGACACTGC  300

seq1  TTTTCTTTTGCAAAGTAGATGGGCAGAGAATAATTCATGCCTACTGCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTGCAAAGTAGATGGGCAGAGAATAATTCATGCCTACTGCTCT  350

seq1  CGGTGGGTTTTTTTCTGCAGCCATATATAATGGATTCAAGGGCATTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGGTTTTTTTCTGCAGCCATATATAATGGATTCAAGGGCATTGAGA  400

seq1  CTCATGAAAGGGAGAGAGAGTTTACAGAGATCCATACCAGGGAAGCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGAAAGGGAGAGAGAGTTTACAGAGATCCATACCAGGGAAGCAGCC  450

seq1  TCCCACCTGGGAGCAGGTGCCTGTGCTTAGCACACCTGTATTGATGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCTGGGAGCAGGTGCCTGTGCTTAGCACACCTGTATTGATGCTCA  500

seq1  ACCCTCCATGGAGGTGACCTCAGGAGGCATGGAGTTTAGAAGGGACCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCATGGAGGTGACCTCAGGAGGCATGGAGTTTAGAAGGGACCATA  550

seq1  TGGAAGAAGGTGACTGTTGCCTTCCTCTTACTGGCGTCTTCTGACCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAAGGTGACTGTTGCCTTCCTCTTACTGGCGTCTTCTGACCTGAG  600

seq1  ATACCCTGGAGCCCTGGGTGGTGCAACATCCTGTTCTCATGGTTGTCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTGGAGCCCTGGGTGGTGCAACATCCTGTTCTCATGGTTGTCATC  650

seq1  TGATCTAGGAATTCAGACCCCTGAGACTCGGATCAGGGTGTAGCCAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAGGAATTCAGACCCCTGAGACTCGGATCAGGGTGTAGCCAGCTG  700

seq1  GTCCACCCTCCTTGTGGAAGGGCTCCTCTGCTCTTACACCCAAGGCCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||| ||||| 
seq2  GTCCACCCTCCTTGTGGAAGGGCTCCTCTGCTCTTACACCCAA-GCCTT-  748

seq1  GGACTACCAGTCTGGTTTGTAGGAGCTGTGACCCAGTTTCCAGATAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTACCAGTCTGGTTTGTAGGAGCTGTGACCCAGTTTCCAGATAAGTG  798

seq1  A-TAACAATGATATTGTGTCTAACCCTGATGAGTCCCTTGGGGTAAAGAT  849
      | ||||||||||||||||||||||||||||||||||||| ||   |||||
seq2  ATTAACAATGATATTGTGTCTAACCCTGATGAGTCCCTTTGGAGTAAGAT  848

seq1  ATTGTCCCTACCCTCTAGGAGGCTTAAGGTTTAGAAGATTTTTAACAGCA  899
      | |||||||||||||||||||   ||| ||||||||||||||| ||||| 
seq2  A-TGTCCCTACCCTCTAGGAG--CTAAAGTTTAGAAGATTTTT-ACAGC-  893

seq1  AGTTGATGGCTGGAATGTGGCTGACTATTCCAGTAATTAGCTTGCTTGTA  949
      ||||||||||||| ||||||||||||||||||||||||||| ||||||| 
seq2  AGTTGATGGCTGGGATGTGGCTGACTATTCCAGTAATTAGC-TGCTTGT-  941

seq1  TTTTTAAGACAACATTTTAGAG-TCCTGAGACCCTGGGGGAGAGCTGAAG  998
      ||||| |||| ||| ||||||| |||||||||||||||||| ||||| ||
seq2  TTTTTTAGAC-ACA-TTTAGAGTTCCTGAGACCCTGGGGGA-AGCTG-AG  987

seq1  TGTTAGGGGAAGGATTCCGACTTTAGGACAGATGAAAAGCTCTGGCAAAA  1048
      || ||||   | ||||||||| |||||| |||||  ||||||||||  ||
seq2  TG-TAGG---AAGATTCCGAC-TTAGGA-AGATG--AAGCTCTGGC--AA  1027

seq1  TGAGAGGAGGGAACTGACC-CAGAGCAAAGGCGCACATGCATCTACCTAA  1097
      ||| |||| |||||||||| || ||| || || || |||| | |||   |
seq2  TGAAAGGA-GGAACTGACCTCAAAGC-AATGCCCA-ATGCCT-TAC--TA  1071

seq1  CAGTTGGGGAGACTGAGGCATGACAATTGAGATGATTCAGC  1138
      |||| || || ||||||||||| ||||||| || |||||||
seq2  CAGTGGGAGA-ACTGAGGCATG-CAATTGA-AT-ATTCAGC  1108