BAC Information

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BAC

Clone NameB6Ng01-120N01
Chromosome11 (Build37)
Map Location 13,624,108 - 13,784,010
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC627244
Downstream geneLOC432535, 1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120N01.bB6Ng01-120N01.g
ACCDH924658DH924659
length1,0851,111
definitionDH924658|Mus musculus domesticus DNA, BAC clone: B6Ng01-120N01, 5' end.DH924659|Mus musculus domesticus DNA, BAC clone: B6Ng01-120N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,782,907 - 13,784,010)(13,624,108 - 13,625,241)
sequence
gaattctctaagtattatggtagtgcattatgcagagaatgtagaaaaca
agaatattgtgaaatgaggggagcaaaggcccgactcacgaggtataaga
aaaaatcgggactctgtcaaactgtgggagaatggccatttatgagatgg
tttgaccaagaatctcattttactctgcctgtatccttaaaacttgagtg
gagctgaacttgaagataagagagtaatttgtttggcaggggaactttca
agacagaaaagaatctactctaaacatcactgatgagaaacacgtacaac
actgaaatgagaaaatgtttggagattaatcacacccattagaagctaaa
tcctgaaagtttctaaatcattctaatggcaaaggtctaaacagaggagt
tccctgcttcttgaatctaactagccaaagaagtatttccttagagtcag
cataagaaacagaagtagatgggtcaagtattaagatccctgtgcaggga
accctggaccacctacagtggagagaatgaactcaacactagcatatatt
cattgctgtgttctttggctttcagtaaccttttattttgtgaatttctt
caccatctgaagttgcaaatagctaattgcattgcagcatcattcatttt
tcactgtgcccaaaatatactggtaatacttccctttaggttaaaacaaa
caaacaaacaaacaaacaaacaaacaaaccaaactaaaaccgaaaccaaa
ccaaaccaaacaaaaacaaacaaataaaaaccagaaggtaatactgatgg
ttacatgaggattaaacataggcttcctccctccacaaaaaaaaaaaaaa
aaaacaaaaaaaaaaacaaaaaaccttcatctttttcatgggtgtattat
tcctgaacaaatacatgttggaaacctcatctacaccctgcatttctatg
ttactttctcagaaatatggatcatggtggcatcattcaaattagctgtg
ctattctttctgagatgcttcagtacattggcacaatagcattttatttg
gaatgagttaagattttcaagactaggatgctttc
gaattcagatgtttgaaacgttgttggtgaaatccaatgtaggaaataat
tctatgaataacctgatttccataaaagaaggaaattctctgaagagttc
aatgctctcttgagcttatttaacattttattctctgagtctgcagatgt
gctgtactgctaggtgaaaatgctttcatcaaattcatagcagcaagttt
agctctctgtaaacatgaccatttgtcaccacagcttcaattcagtccag
tggatgttgatttgtatagttcaggactctctacaatattcatgattcct
tgcatcgcttgaacaggttaaatttttgcttcccctgcagcagaactggc
tatagatgtttgcatatttgaaatgctgcctgcttcctagactttgcaaa
tttactttcagcgtgttcaagatggcatgcattagtcatgaagacctcag
cctccaagctatcaaactctcttaaaatcttactcctgtgaggccaagcc
gtcagagactcccaaatgggctatgagtcatgactgtagaccaaatgcct
tattatcctaaaaagaagcttaggcattcccagagaaagtccctttgaga
tttccaatttctgccctgagaattgccctgcaatgatcttcatttgataa
cttgccttcagctacaaatcatgtacttgcagagcacagtggcaggagac
agtgcccaatatgcactcttacactgagctaactccagaatggatatgga
aagagaagtgagtcatggagagataaatgtttaaaacctccatcctgctt
agggttacaggtccagtacattaaagagccttactgtctgctctccctac
aatcttttacagcttctggatgacatttcttattctttgttctctaccat
ccttttactttcccattcttactatctttcttactgtccagtgattccta
atatttttaacaccttgtttcttaacttgtctctaatttcttagagctgt
aatagagcctccttctgttctatatctttttcattctcatgtgtatcttg
cttcttgatcaggtagcagccaattcctcagagactattaaagtggatgt
acatatacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_13782907_13784010
seq2: B6Ng01-120N01.b_46_1130 (reverse)

seq1  GAAAGCATTCTTAGTTCTTGTAAAATCTTTAACTCATTTCAAAATAAAAA  50
      ||||||| || ||| ||||| |||||| |||||||||| ||||   ||||
seq2  GAAAGCA-TCCTAG-TCTTG-AAAATC-TTAACTCATTCCAAA--TAAAA  44

seq1  TGCTATTTGTGCAAATGTACTGAGGCATCTCAGAAAGAATAGCACAAGCT  100
      ||||| |||||| |||||||||| ||||||||||||||||||||| ||| 
seq2  TGCTA-TTGTGCCAATGTACTGAAGCATCTCAGAAAGAATAGCAC-AGC-  91

seq1  TAATTTGAATGATGCCACATTGATCAATA-TTCTGAGAAAGTAACAATTA  149
      ||||||||||||||||||  ||||| ||| ||||||||||||||||  ||
seq2  TAATTTGAATGATGCCACCATGATCCATATTTCTGAGAAAGTAACA--TA  139

seq1  GAAATGCAAGGTGTAGATGA-GTTTCCAACATTGTATTTGTTCAGGAATA  198
      |||||||| ||||||||||| |||||||||| ||||||||||||||||||
seq2  GAAATGCAGGGTGTAGATGAGGTTTCCAACA-TGTATTTGTTCAGGAATA  188

seq1  ATACA-CCATGGAAAAAAGATGAAGGGTTTTTTTGTTTTTTTTTTTGTTT  247
      ||||| |||||  |||||||||||||  |||||||||||||||||||   
seq2  ATACACCCATG--AAAAAGATGAAGG--TTTTTTGTTTTTTTTTTTG---  231

seq1  TTTTTTTTTTTTTTTTTTTTTGTGGAGGGAGGAAGCCTATGTTTAATCCT  297
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ---TTTTTTTTTTTTTTTTTTGTGGAGGGAGGAAGCCTATGTTTAATCCT  278

seq1  CATGTAACCATCAGTATTACCTTCTGGTTTTTATTTGTTTGTTTTTGTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAACCATCAGTATTACCTTCTGGTTTTTATTTGTTTGTTTTTGTTT  328

seq1  GGTTTGGTTTGGTTTCGGTTTTAGTTTGGTTTGTTTGTTTGTTTGTTTGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGTTTGGTTTCGGTTTTAGTTTGGTTTGTTTGTTTGTTTGTTTGT  378

seq1  TTGTTTGTTTGTTTTAACCTAAAGGGAAGTATTACCAGTATATTTTGGGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTTAACCTAAAGGGAAGTATTACCAGTATATTTTGGGC  428

seq1  ACAGTGAAAAATGAATGATGCTGCAATGCAATTAGCTATTTGCAACTTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAAAAATGAATGATGCTGCAATGCAATTAGCTATTTGCAACTTCA  478

seq1  GATGGTGAAGAAATTCACAAAATAAAAGGTTACTGAAAGCCAAAGAACAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGAAGAAATTCACAAAATAAAAGGTTACTGAAAGCCAAAGAACAC  528

seq1  AGCAATGAATATATGCTAGTGTTGAGTTCATTCTCTCCACTGTAGGTGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGAATATATGCTAGTGTTGAGTTCATTCTCTCCACTGTAGGTGGT  578

seq1  CCAGGGTTCCCTGCACAGGGATCTTAATACTTGACCCATCTACTTCTGTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTTCCCTGCACAGGGATCTTAATACTTGACCCATCTACTTCTGTT  628

seq1  TCTTATGCTGACTCTAAGGAAATACTTCTTTGGCTAGTTAGATTCAAGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGCTGACTCTAAGGAAATACTTCTTTGGCTAGTTAGATTCAAGAA  678

seq1  GCAGGGAACTCCTCTGTTTAGACCTTTGCCATTAGAATGATTTAGAAACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGAACTCCTCTGTTTAGACCTTTGCCATTAGAATGATTTAGAAACT  728

seq1  TTCAGGATTTAGCTTCTAATGGGTGTGATTAATCTCCAAACATTTTCTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGATTTAGCTTCTAATGGGTGTGATTAATCTCCAAACATTTTCTCA  778

seq1  TTTCAGTGTTGTACGTGTTTCTCATCAGTGATGTTTAGAGTAGATTCTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTGTTGTACGTGTTTCTCATCAGTGATGTTTAGAGTAGATTCTTT  828

seq1  TCTGTCTTGAAAGTTCCCCTGCCAAACAAATTACTCTCTTATCTTCAAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTGAAAGTTCCCCTGCCAAACAAATTACTCTCTTATCTTCAAGT  878

seq1  TCAGCTCCACTCAAGTTTTAAGGATACAGGCAGAGTAAAATGAGATTCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCACTCAAGTTTTAAGGATACAGGCAGAGTAAAATGAGATTCTT  928

seq1  GGTCAAACCATCTCATAAATGGCCATTCTCCCACAGTTTGACAGAGTCCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAACCATCTCATAAATGGCCATTCTCCCACAGTTTGACAGAGTCCC  978

seq1  GATTTTTTCTTATACCTCGTGAGTCGGGCCTTTGCTCCCCTCATTTCACA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTCTTATACCTCGTGAGTCGGGCCTTTGCTCCCCTCATTTCACA  1028

seq1  ATATTCTTGTTTTCTACATTCTCTGCATAATGCACTACCATAATACTTAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTGTTTTCTACATTCTCTGCATAATGCACTACCATAATACTTAG  1078

seq1  AGAATTC  1104
      |||||||
seq2  AGAATTC  1085

seq1: chr11_13624108_13625241
seq2: B6Ng01-120N01.g_65_1175

seq1  GAATTCAGATGTTTGAAACGTTGTTGGTGAAATCCAATGTAGGAAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGTTTGAAACGTTGTTGGTGAAATCCAATGTAGGAAATAAT  50

seq1  TCTATGAATAACCTGATTTCCATAAAAGAAGGAAATTCTCTGAAGAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAATAACCTGATTTCCATAAAAGAAGGAAATTCTCTGAAGAGTTC  100

seq1  AATGCTCTCTTGAGCTTATTTAACATTTTATTCTCTGAGTCTGCAGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTCTCTTGAGCTTATTTAACATTTTATTCTCTGAGTCTGCAGATGT  150

seq1  GCTGTACTGCTAGGTGAAAATGCTTTCATCAAATTCATAGCAGCAAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTACTGCTAGGTGAAAATGCTTTCATCAAATTCATAGCAGCAAGTTT  200

seq1  AGCTCTCTGTAAACATGACCATTTGTCACCACAGCTTCAATTCAGTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCTGTAAACATGACCATTTGTCACCACAGCTTCAATTCAGTCCAG  250

seq1  TGGATGTTGATTTGTATAGTTCAGGACTCTCTACAATATTCATGATTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTTGATTTGTATAGTTCAGGACTCTCTACAATATTCATGATTCCT  300

seq1  TGCATCGCTTGAACAGGTTAAATTTTTGCTTCCCCTGCAGCAGAACTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCGCTTGAACAGGTTAAATTTTTGCTTCCCCTGCAGCAGAACTGGC  350

seq1  TATAGATGTTTGCATATTTGAAATGCTGCCTGCTTCCTAGACTTTGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATGTTTGCATATTTGAAATGCTGCCTGCTTCCTAGACTTTGCAAA  400

seq1  TTTACTTTCAGCGTGTTCAAGATGGCATGCATTAGTCATGAAGACCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTCAGCGTGTTCAAGATGGCATGCATTAGTCATGAAGACCTCAG  450

seq1  CCTCCAAGCTATCAAACTCTCTTAAAATCTTACTCCTGTGAGGCCAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAGCTATCAAACTCTCTTAAAATCTTACTCCTGTGAGGCCAAGCC  500

seq1  GTCAGAGACTCCCAAATGGGCTATGAGTCATGACTGTAGACCAAATGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGACTCCCAAATGGGCTATGAGTCATGACTGTAGACCAAATGCCT  550

seq1  TATTATCCTAAAAAGAAGCTTAGGCATTCCCAGAGAAAGTCCCTTTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCCTAAAAAGAAGCTTAGGCATTCCCAGAGAAAGTCCCTTTGAGA  600

seq1  TTTCCAATTTCTGCCCTGAGAATTGCCCTGCAATGATCTTCATTTGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATTTCTGCCCTGAGAATTGCCCTGCAATGATCTTCATTTGATAA  650

seq1  CTTGCCTTCAGCTACAAATCATGTACTTGCAGAGCACAGTGGCAGGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTCAGCTACAAATCATGTACTTGCAGAGCACAGTGGCAGGAGAC  700

seq1  AGTGCCCAATATGCACTCTTACACTGAGCTAACTCCAGAATGGATATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCCAATATGCACTCTTACACTGAGCTAACTCCAGAATGGATATGGA  750

seq1  AAGAGAAGTGAGTCAGGGAGAGATAAATGTTTAAAACCTCCATCCTGCTT  800
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGTGAGTCATGGAGAGATAAATGTTTAAAACCTCCATCCTGCTT  800

seq1  AGGGTTACAGGTCCAGTACATTAAAGAGCCTTACTGTCTGCTCTCCCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTACAGGTCCAGTACATTAAAGAGCCTTACTGTCTGCTCTCCCTAC  850

seq1  AATCTTTTACAGCTTCTGGATGACATTTCTTATTCTTTGTTCTCTTACCA  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATCTTTTACAGCTTCTGGATGACATTTCTTATTCTTTGTTCTC-TACCA  899

seq1  TCCTTTTTAACTTTCCCATTCTTTTACTATCTTTCTTACTGTCCAAGTGA  950
      |||||||  ||||||||||||  ||||||||||||||||||||| |||||
seq2  TCCTTTT--ACTTTCCCATTC--TTACTATCTTTCTTACTGTCC-AGTGA  944

seq1  TTCCTAATATTTTTAACAACCTTGTTTCTTTAACTTGTCTCTAATTTCTT  1000
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  TTCCTAATATTTTTAAC-ACCTTGTTTC-TTAACTTGTCTCTAATTTCTT  992

seq1  AGAGCTGTAAATAGGAAGCCTCCTTCTGTTCTATAATCTTTTTCCAATTC  1050
      |||||||| |||||  |||||||||||||||||| |||||||||  ||||
seq2  AGAGCTGT-AATAG--AGCCTCCTTCTGTTCTAT-ATCTTTTTC--ATTC  1036

seq1  TTCATTGTGTATCTTGCCTTCCTTGATCAAGTTTAAGCAGGCCATTTCTC  1100
       ||| ||||||||||||  | |||||||| ||   ||||| | ||| |||
seq2  -TCA-TGTGTATCTTGC--TTCTTGATCAGGT---AGCAGCCAATTCCTC  1079

seq1  AGGAGTACTATATATGTGTATGTACATATACATG  1134
      | ||| |||||  | ||| |||||||||||||||
seq2  A-GAG-ACTATTAAAGTGGATGTACATATACATG  1111