BAC Information

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BAC

Clone NameB6Ng01-121D02
Chromosome11 (Build37)
Map Location 36,942,792 - 37,050,650
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz2
Downstream geneLOC100039148, LOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121D02.bB6Ng01-121D02.g
ACCDH924938DH924939
length5941,105
definitionDH924938|Mus musculus domesticus DNA, BAC clone: B6Ng01-121D02, 5' end.DH924939|Mus musculus domesticus DNA, BAC clone: B6Ng01-121D02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,050,052 - 37,050,650)(36,942,792 - 36,943,920)
sequence
tctgacaaacaaacaaaaaaagaaactgttttctgaggcttggaagcctc
gcttccctatttccgcgcccccaggggcaggtttagggccaccacctggc
aatccagaggaggcaaggctgcagctgagaaggctccaggaaacccggtc
ttccctgggctttgccctctcctctgcttcgctctgcattcctaaccctg
gaaggaacggtctgggtccagccgagcactgggcatgctcgcgagccggg
gcaggctccgggagtccgcaggatgcgtaggctggcgatgctccctagtt
cgcagaaccccggttgcagccgtggtgcatcgggtttagcagagcagagt
cctcggtgcgtgcagctagggaacccggtctgcccgggacaagcccagaa
ccgaactgaactctatgaggcccgggcttggcgcgctcagtttctgctct
tggaaacgcccggctggaagaggggggcgggggggggcgggatatctctg
cagacaaaggggtacacgttcccctagcgcccctctttaccagccaagaa
ccctttccggggctcgctacccctttttatcttaaggcacctac
gaattctgttagttttgaattaactatttgtttttaaaacaaacccacag
aggcactagttttctttttatagggaaatgaattagaatattttattacc
attcttttctaagactaataaattacctcttttaaaaaaagaacgaaaag
aaaaatagggccacctgcgcactcagtaccaattgaggccacttttcaga
aactggcacttgctttgtactgctacctgaattcaagagaaattaccttt
ttatgtcacctgtcaatcctccattactgaagacaaaacagctccaccct
gaactaggagcacccaggacttgcagacaagcttgccagtagttcttaca
tccgacccagtttcactcaaccacagccccgagtcgagactcctagattc
tggaaacaaaatcaatcagaccaggtcctgttgggcaaccacacctatcc
taagtgatgtgtctttcttaaaagcatctttctatcaatcctcctcatct
gcctttatgtcctgacacctaaaacacactacatttcgtttgctgagacc
aacccttccttgcccatccctcttgccagtccactcttaatgtctgtatt
cttgaatgatatgctacacaaggaggaagaatagaatgctgtttaggatt
taggatcctttaggatctaaataaaatcacgccaacaccttcctcatcct
gtactaactgaatgattactaagacatcagctttcactttaaatattatc
cctgaactgaaaagccggttgctgtctgttttgctttgatatttgaatgg
tattttgaaatacagaaaactgttttgtctctttcgtggtgagggttcca
tgctttcatcatatttaaaaagtactcatagaaccgaacaaaaccgctgt
ttttattaatgagaatgttcagaattagagctgtaactggtttctgtgac
tgggacctaggcacaaatcatatttcctctattaaaaaattttttaaagc
ttttattgttgtgcctgtttcaaatctacagtaaacatttttacaggagt
ttagacttctgtaatttgatgaatctaagtaatggactaaataatacggg
aaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_37050052_37050650
seq2: B6Ng01-121D02.b_46_645 (reverse)

seq1  GTTGGTGCCTTTAGAT-CTAAGGGGTAGCGAGCCCCGGAAAGGGTTCTTG  49
      || |||||||| ||||   |||||||||||||||||||||||||||||||
seq2  GTAGGTGCCTTAAGATAAAAAGGGGTAGCGAGCCCCGGAAAGGGTTCTTG  50

seq1  GCTGGTAAAGAGGGGCGCTAGGGGAACGTGTACCCCTTTGTCTGCAGAGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTAAAGAGGGGCGCTAGGGGAACGTGTACCCCTTTGTCTGCAGAGA  100

seq1  TATCCCGCCCCCCCCCGCCCCCCTCTTCCAGCCGGGCGTTTCCAAGAGCA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCGCCCCCCCCCGCCCCCCTCTTCCAGCCGGGCGTTTCCAAGAGCA  150

seq1  GAAACTGAGCGCGCCAAGCCCGGGCCTCATAGAGTTCAGTTCGGTTCTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAGCGCGCCAAGCCCGGGCCTCATAGAGTTCAGTTCGGTTCTGG  200

seq1  GCTTGTCCCGGGCAGACCGGGTTCCCTAGCTGCACGCACCGAGGACTCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCCCGGGCAGACCGGGTTCCCTAGCTGCACGCACCGAGGACTCTG  250

seq1  CTCTGCTAAACCCGATGCACCACGGCTGCAACCGGGGTTCTGCGAACTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTAAACCCGATGCACCACGGCTGCAACCGGGGTTCTGCGAACTAG  300

seq1  GGAGCATCGCCAGCCTACGCATCCTGCGGACTCCCGGAGCCTGCCCCGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATCGCCAGCCTACGCATCCTGCGGACTCCCGGAGCCTGCCCCGGC  350

seq1  TCGCGAGCATGCCCAGTGCTCGGCTGGACCCAGACCGTTCCTTCCAGGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCGAGCATGCCCAGTGCTCGGCTGGACCCAGACCGTTCCTTCCAGGGT  400

seq1  TAGGAATGCAGAGCGAAGCAGAGGAGAGGGCAAAGCCCAGGGAAGACCGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGCAGAGCGAAGCAGAGGAGAGGGCAAAGCCCAGGGAAGACCGG  450

seq1  GTTTCCTGGAGCCTTCTCAGCTGCAGCCTTGCCTCCTCTGGATTGCCAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTGGAGCCTTCTCAGCTGCAGCCTTGCCTCCTCTGGATTGCCAGG  500

seq1  TGGTGGCCCTAAACCTGCCCCTGGGGGCGCGGAAATAGGGAAGCGAGGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCCCTAAACCTGCCCCTGGGGGCGCGGAAATAGGGAAGCGAGGCT  550

seq1  TCCAAGCCTCAGAAAACAGTTTCTTTTTTTGTTTGTTTGTCAGAGAATTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCCTCAGAAAACAGTTTCTTTTTTTGTTTGTTTGTCAGAGAATTC  600

seq1: chr11_36942792_36943920
seq2: B6Ng01-121D02.g_65_1169

seq1  GAATTCTGTTAGTTTTGAATTAACTATTTGTTTTTAAAACAAACCCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTAGTTTTGAATTAACTATTTGTTTTTAAAACAAACCCACAG  50

seq1  AGGCACTAGTTTTCTTTTTATAGGGAAATGAATTAGAATATTTTATTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTAGTTTTCTTTTTATAGGGAAATGAATTAGAATATTTTATTACC  100

seq1  ATTCTTTTCTAAGACTAATAAATTACCTCTTTTAAAAAAAGAACGAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTCTAAGACTAATAAATTACCTCTTTTAAAAAAAGAACGAAAAG  150

seq1  AAAAATAGGGCCACCTGCGCACTCAGTACCAATTGAGGCCACTTTTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGGGCCACCTGCGCACTCAGTACCAATTGAGGCCACTTTTCAGA  200

seq1  AACTGGCACTTGCTTTGTACTGCTACCTGAATTCAAGAGAAATTACCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCACTTGCTTTGTACTGCTACCTGAATTCAAGAGAAATTACCTTT  250

seq1  TTATGTCACCTGTCAATCCTCCATTACTGAAGACAAAACAGCTCCACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCACCTGTCAATCCTCCATTACTGAAGACAAAACAGCTCCACCCT  300

seq1  GAACTAGGAGCACCCAGGACTTGCAGACAAGCTTGCCAGTAGTTCTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGGAGCACCCAGGACTTGCAGACAAGCTTGCCAGTAGTTCTTACA  350

seq1  TCCGACCCAGTTTCACTCAACCACAGCCCCGAGTCGAGACTCCTAGATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGACCCAGTTTCACTCAACCACAGCCCCGAGTCGAGACTCCTAGATTC  400

seq1  TGGAAACAAAATCAATCAGACCAGGTCCTGTTGGGCAACCACACCTATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACAAAATCAATCAGACCAGGTCCTGTTGGGCAACCACACCTATCC  450

seq1  TAAGTGATGTGTCTTTCTTAAAAGCATCTTTCTATCAATCCTCCTCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGATGTGTCTTTCTTAAAAGCATCTTTCTATCAATCCTCCTCATCT  500

seq1  GCCTTTATGTCCTGACACCTAAAACACACTACATTTCGTTTGCTGAGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTATGTCCTGACACCTAAAACACACTACATTTCGTTTGCTGAGACC  550

seq1  AACCCTTCCTTGCCCATCCCTCTTGCCAGTCCACTCTTAATGTCTGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTCCTTGCCCATCCCTCTTGCCAGTCCACTCTTAATGTCTGTATT  600

seq1  CTTGAATGATATGCTACACAAGGAGGAAGAATAGAATGCTGTTTAGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATGATATGCTACACAAGGAGGAAGAATAGAATGCTGTTTAGGATT  650

seq1  TAGGATCCTTTAGGATCTAAATAAAATCACGCCAACACCTTCCTCATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCCTTTAGGATCTAAATAAAATCACGCCAACACCTTCCTCATCCT  700

seq1  GTACTAACTGAATGATTACTAAGACATCAGCTTTCACTTTAAATATTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAACTGAATGATTACTAAGACATCAGCTTTCACTTTAAATATTATC  750

seq1  CCTGAACTGAAAAGCCGGTTGCTGTCTGTTTTGCTTTGATATTTGAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTGAAAAGCCGGTTGCTGTCTGTTTTGCTTTGATATTTGAATGG  800

seq1  TATTTTGAAATACAGAAAACTGTTTTGTCTCTTTCGTGGTGAGGGTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGAAATACAGAAAACTGTTTTGTCTCTTTCGTGGTGAGGGTTCCA  850

seq1  TGCTTTCATCATATTTAAAAAGTACTCATAGAACCGAACAAAACCGCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCATCATATTTAAAAAGTACTCATAGAACCGAACAAAACCGCTGT  900

seq1  TTTTATTAATGAGAATGTTCAGAATTAGAGCTGTAACTGGGTTTCTGTGA  950
      |||||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  TTTTATTAATGAGAATGTTCAGAATTAGAGCTGTAACT-GGTTTCTGTG-  948

seq1  ACTGGGACCTAGGCACAAATCATAATTTCCTTCTATTAAAAAAAATTTTT  1000
      ||||||||||||||||||||||| |||||| ||||||||||||   ||||
seq2  ACTGGGACCTAGGCACAAATCAT-ATTTCC-TCTATTAAAAAA---TTTT  993

seq1  TTAAAGCTTTTATTGTTTGTTGCCTGTTTTCCAAATTCTACAGTAAACAA  1050
      |||||||||||||||||   |||||||||  |||| ||||||||||||| 
seq2  TTAAAGCTTTTATTGTT--GTGCCTGTTT--CAAA-TCTACAGTAAACA-  1037

seq1  TTTTTTACAGGAAAGTTTTAAGAACTTTCTGTATTTTGATTGATTCTTAA  1100
       ||||||||||  |||||  |||   ||||||| ||||| ||| || |||
seq2  -TTTTTACAGG--AGTTT--AGA--CTTCTGTAATTTGA-TGAATC-TAA  1078

seq1  GTTATTGGACTAAAATAATACGGGAAATA  1129
      | || |||||| |||||||||||||||||
seq2  G-TAATGGACT-AAATAATACGGGAAATA  1105