BAC Information

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BAC

Clone NameB6Ng01-121M09
Chromosome11 (Build37)
Map Location 104,038,486 - 104,197,255
singlet/doubletdoublet
Overlap gene4933407P14Rik, Mapt, 1700081L11Rik
Upstream geneFmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1
Downstream geneCdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121M09.bB6Ng01-121M09.g
ACCDH925371DH925372
length1,0361,105
definitionDH925371|Mus musculus domesticus DNA, BAC clone: B6Ng01-121M09, 5' end.DH925372|Mus musculus domesticus DNA, BAC clone: B6Ng01-121M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,196,219 - 104,197,255)(104,038,486 - 104,039,595)
sequence
gaattcactaggcagggctgatagttcctcgtggctcttacatattgtgt
tatggaccctaccctgtgtgggtaaaagtggaagcaagtaccgttgatgg
atcttaaaagagtgccattgctctcagttcgagttaactgctttggtgta
gatgcctttttaaaataactcctcttactacccccacccccaaaaagaag
cagaaaaagtgcttactcattggtgtatttcttggctcataggtcttaca
ggtcatcagacggccggaccacccctcagttgggcagtgccaacccctcc
accccacagcctgcgtcccctgatgtcagtagtagccactctctgtcaga
attctcccatggtcaatctcctaggagtcccattagcccagaactacact
cagcccctctcacccctgtggctcgggacagtctgcgacacctggccagt
gaagacacccgatgttccacaccagagctgggactagatgaacaggtgag
gagagggtatctcctttgagtggagggagggcaagatatgaggtagaaca
gggaggggggcagcatgtgccgaagataaagctcttctctctgttgtttt
gaaatgaagtgtggttggtcattgttcctagggaagcccaccttgggagc
agtctcgataaacttctccccaagtttgaggtcagggccttggctctgga
aactggtcatcaccagatcatcttgtctgtccacagtcagtccagccatg
ggaacgacggaccttccctctggcctacagtccccaggcagaatgtgagg
agcagctggatgcacaggacacggcagcccgctgcactcgccgcacctca
gcagcaagactgggccgggaggcagaggtggcacccacctcgccttcctg
ttgtcccgctcagagtcggcatctggcagcaacagtcacagctcagcgcc
cagctcacagatgagcggaaaatgagactatacagactcactactattgg
cattaaagcttcagaaatctctgcgtttgatttcaa
gaattccaaggcctctgattcatcccacccagctcctctgctgactttaa
actcacctgctgaccacactgggtctgacgtggccaggtagcctctgcag
caatcctgagccagtccttcctgtccctgggcaccaggcctcacataggg
gtcaaactgctctgtgttcaaccctgtgaacccagtgatgctgctctccc
atttaacatatgaggaaggtggagcccagagaggagaagagggcttcctg
agggcacacagcagaggcgtggctgaaggagaacccaagcagcttcacat
gctccagttttccagcaagtgccccaggagcccactgcaaggtggccctc
tctctcctccttctgggggcattgtccagcttcccagtcagtagacaagc
agtgtttagagatgagctgactgaaccgcctgcagaacagggccctcagc
ctgcccacctcccagtgtcctagcctgtttcacattcacatttcagcatg
gtttcccattatcctgctaacacaccaacctgaaaatcctgtagctcaga
atggagaaagacctgaaccatgggaagtcatgagttccagactgcaagcc
actcctactgtgtctctatggggtcctgaacagaacccctaacacccagc
ctcattgtccattggacaaagacacagggcaggagcagggcttttcagag
acccagggatgccaaggaataccacagataccctccagctagggtagaca
gcatggggtgttccttctttggccttcactcctagggtggtggggaagag
acaagtaatgtctaggcccagatctgttcagctggaaaggtgtgggccat
tgagccaggccaggaaagggtctaggagaccctgtcccttccccactgtc
cttacctgcagtcctcgatactttgattggatgaagatgatatcccaggt
gccacctagacctaggtcccaacagaatactgacactttgtcccagctac
tggggagcccctgagagcccagatcttagcagagggttgcagtgggacta
gtgaacctgttggcaaaggactggggcagttttaacgtggggagtagtga
agcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_104196219_104197255
seq2: B6Ng01-121M09.b_50_1085 (reverse)

seq1  TTGAATATCAAACGCAGAGATTTCTGAAGCTTTAATGCCAATAGTAGTGA  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAA-ATCAAACGCAGAGATTTCTGAAGCTTTAATGCCAATAGTAGTGA  49

seq1  GTCTGTATAGTCTCATTTTCCGCTCATCTGTGAGCTGGGCGCTGAGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTATAGTCTCATTTTCCGCTCATCTGTGAGCTGGGCGCTGAGCTGT  99

seq1  GACTGTTGCTGCCAGATGCCGACTCTTGAGCGGGACAACAGG-AGGCGAG  149
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  GACTGTTGCTGCCAGATGCCGACTC-TGAGCGGGACAACAGGAAGGCGAG  148

seq1  GTGGGTGCCACCTCTGCCTCCCGG-CCAGTCTTGCTGCCTGAGGTGCGGC  198
      |||||||||||||||||||||||| |||||||||||| ||||||||||||
seq2  GTGGGTGCCACCTCTGCCTCCCGGCCCAGTCTTGCTG-CTGAGGTGCGGC  197

seq1  GAGTGCAGCGGGCTGCCGTGTCCTGTGCATCCAGCTGCTCCTCACATTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCAGCGGGCTGCCGTGTCCTGTGCATCCAGCTGCTCCTCACATTCT  247

seq1  GCCTGGGGACTGTAGGCCAGAGGGAAGGTCCGTCGTTCCCATGGCTGGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGGACTGTAGGCCAGAGGGAAGGTCCGTCGTTCCCATGGCTGGAC  297

seq1  TGACTGTGGACAGACAAGATGATCTGGTGATGACCAGTTTCCAGAGCCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGGACAGACAAGATGATCTGGTGATGACCAGTTTCCAGAGCCAA  347

seq1  GGCCCTGACCTCAAACTTGGGGAGAAGTTTATCGAGACTGCTCCCAAGGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGACCTCAAACTTGGGGAGAAGTTTATCGAGACTGCTCCCAAGGT  397

seq1  GGGCTTCCCTAGGAACAATGACCAACCACACTTCATTTCAAAACAACAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCCCTAGGAACAATGACCAACCACACTTCATTTCAAAACAACAGA  447

seq1  GAGAAGAGCTTTATCTTCGGCACATGCTGCCCCCCTCCCTGTTCTACCTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGCTTTATCTTCGGCACATGCTGCCCCCCTCCCTGTTCTACCTC  497

seq1  ATATCTTGCCCTCCCTCCACTCAAAGGAGATACCCTCTCCTCACCTGTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTGCCCTCCCTCCACTCAAAGGAGATACCCTCTCCTCACCTGTTC  547

seq1  ATCTAGTCCCAGCTCTGGTGTGGAACATCGGGTGTCTTCACTGGCCAGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTCCCAGCTCTGGTGTGGAACATCGGGTGTCTTCACTGGCCAGGT  597

seq1  GTCGCAGACTGTCCCGAGCCACAGGGGTGAGAGGGGCTGAGTGTAGTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCAGACTGTCCCGAGCCACAGGGGTGAGAGGGGCTGAGTGTAGTTCT  647

seq1  GGGCTAATGGGACTCCTAGGAGATTGACCATGGGAGAATTCTGACAGAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAATGGGACTCCTAGGAGATTGACCATGGGAGAATTCTGACAGAGA  697

seq1  GTGGCTACTACTGACATCAGGGGACGCAGGCTGTGGGGTGGAGGGGTTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTACTACTGACATCAGGGGACGCAGGCTGTGGGGTGGAGGGGTTGG  747

seq1  CACTGCCCAACTGAGGGGTGGTCCGGCCGTCTGATGACCTGTAAGACCTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCCAACTGAGGGGTGGTCCGGCCGTCTGATGACCTGTAAGACCTA  797

seq1  TGAGCCAAGAAATACACCAATGAGTAAGCACTTTTTCTGCTTCTTTTTGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAAGAAATACACCAATGAGTAAGCACTTTTTCTGCTTCTTTTTGG  847

seq1  GGGTGGGGGTAGTAAGAGGAGTTATTTTAAAAAGGCATCTACACCAAAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGGTAGTAAGAGGAGTTATTTTAAAAAGGCATCTACACCAAAGC  897

seq1  AGTTAACTCGAACTGAGAGCAATGGCACTCTTTTAAGATCCATCAACGGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACTCGAACTGAGAGCAATGGCACTCTTTTAAGATCCATCAACGGT  947

seq1  ACTTGCTTCCACTTTTACCCACACAGGGTAGGGTCCATAACACAATATGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTCCACTTTTACCCACACAGGGTAGGGTCCATAACACAATATGT  997

seq1  AAGAGCCACGAGGAACTATCAGCCCTGCCTAGTGAATTC  1037
      |||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCACGAGGAACTATCAGCCCTGCCTAGTGAATTC  1036

seq1: chr11_104038486_104039595
seq2: B6Ng01-121M09.g_69_1173

seq1  GAATTCCAAGGCCTCTGATTCATCCCACCCAGCTCCTCTGCTGACTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGCCTCTGATTCATCCCACCCAGCTCCTCTGCTGACTTTAA  50

seq1  ACTCACCTGCTGACCACACTGGGTCTGACGTGGCCAGGTAGCCTCTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCTGCTGACCACACTGGGTCTGACGTGGCCAGGTAGCCTCTGCAG  100

seq1  CAATCCTGAGCCAGTCCTTCCTGTCCCTGGGCACCAGGCCTCACATAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTGAGCCAGTCCTTCCTGTCCCTGGGCACCAGGCCTCACATAGGG  150

seq1  GTCAAACTGCTCTGTGTTCAACCCTGTGAACCCAGTGATGCTGCTCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACTGCTCTGTGTTCAACCCTGTGAACCCAGTGATGCTGCTCTCCC  200

seq1  ATTTAACATATGAGGAAGGTGGAGCCCAGAGAGGAGAAGAGGGCTTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACATATGAGGAAGGTGGAGCCCAGAGAGGAGAAGAGGGCTTCCTG  250

seq1  AGGGCACACAGCAGAGGCGTGGCTGAAGGAGAACCCAAGCAGCTTCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACACAGCAGAGGCGTGGCTGAAGGAGAACCCAAGCAGCTTCACAT  300

seq1  GCTCCAGTTTTCCAGCAAGTGCCCCAGGAGCCCACTGCAAGGTGGCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGTTTTCCAGCAAGTGCCCCAGGAGCCCACTGCAAGGTGGCCCTC  350

seq1  TCTCTCCTCCTTCTGGGGGCATTGTCCAGCTTCCCAGTCAGTAGACAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCTCCTTCTGGGGGCATTGTCCAGCTTCCCAGTCAGTAGACAAGC  400

seq1  AGTGTTTAGAGATGAGCTGACTGAACCGCCTGCAGAACAGGGCCCTCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTAGAGATGAGCTGACTGAACCGCCTGCAGAACAGGGCCCTCAGC  450

seq1  CTGCCCACCTCCCAGTGTCCTAGCCTGTTTCACATTCACATTTCAGCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACCTCCCAGTGTCCTAGCCTGTTTCACATTCACATTTCAGCATG  500

seq1  GTTTCCCATTATCCTGCTAACACACCAACCTGAAAATCCTGTAGCTCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCATTATCCTGCTAACACACCAACCTGAAAATCCTGTAGCTCAGA  550

seq1  ATGGAGAAAGACCTGAACCATGGGAAGTCATGAGTTCCAGACTGCAAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAAGACCTGAACCATGGGAAGTCATGAGTTCCAGACTGCAAGCC  600

seq1  ACTCCTACTGTGTCTCTATGGGGTCCTGAACAGAACCCCTAACACCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTACTGTGTCTCTATGGGGTCCTGAACAGAACCCCTAACACCCAGC  650

seq1  CTCATTGTCCATTGGACAAAGACACAGGGCAGGAGCAGGGCTTTTCAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGTCCATTGGACAAAGACACAGGGCAGGAGCAGGGCTTTTCAGAG  700

seq1  ACCCAGGGATGCCAAGGAATACCACAGATACCCTCCAGCTAGGGTAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGATGCCAAGGAATACCACAGATACCCTCCAGCTAGGGTAGACA  750

seq1  GCATGGGGTGTTCCTTCTTTGGCCTTCACTCCTAGGGTGGTGGGGAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGGTGTTCCTTCTTTGGCCTTCACTCCTAGGGTGGTGGGGAAGAG  800

seq1  ACAAGTAATGTCTAGGCCCAGATCTGTTCCAGCTGGAAAGGTGTGGGCCA  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACAAGTAATGTCTAGGCCCAGATCTGTT-CAGCTGGAAAGGTGTGGGCCA  849

seq1  TTGAGCCAGGCCAGGAAAGGGTCTAGGAGACCCTGTCCCTTCCCCACTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCAGGCCAGGAAAGGGTCTAGGAGACCCTGTCCCTTCCCCACTGT  899

seq1  CCTTACCTGCAGTCCTCGATACTTTGATTGGATGAAGATGAATATCCCAG  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTTACCTGCAGTCCTCGATACTTTGATTGGATGAAGATG-ATATCCCAG  948

seq1  GTGCCACCTAGGACCTAGGTCCCAACAG-ATACTGACACTTTGTCCCAAG  999
      |||||||||| ||||||||||||||||| |||||||||||||||||| ||
seq2  GTGCCACCTA-GACCTAGGTCCCAACAGAATACTGACACTTTGTCCC-AG  996

seq1  CTACCTGGGGAGCCCCTGAGAGCCCAGATCTTAGCAGAGGGTTGCAGTGG  1049
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTA-CTGGGGAGCCCCTGAGAGCCCAGATCTTAGCAGAGGGTTGCAGTGG  1045

seq1  GACTAGGTGACACTGTTGGCATAGGACT-GTGCAGTTATAACGTGGGGAG  1098
      ||||| ||||  ||||||||| |||||| | |||||| ||||||||||||
seq2  GACTA-GTGAACCTGTTGGCAAAGGACTGGGGCAGTTTTAACGTGGGGAG  1094

seq1  TAGTGGAAGCCT  1110
      |||| |||||||
seq2  TAGT-GAAGCCT  1105