BAC Information

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BAC

Clone NameB6Ng01-121M12
Chromosome11 (Build37)
Map Location 9,575,288 - 9,576,332
singlet/doubletsinglet
Overlap geneAbca13
Upstream geneLOC638720, Pkd1l1, LOC624800, Hus1, Sunc1, OTTMUSG00000005148, Upp1, LOC626887, LOC100041469
Downstream geneLOC665435, LOC382483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121M12.bB6Ng01-121M12.g
ACCDH925376DH925377
length7651,026
definitionDH925376|Mus musculus domesticus DNA, BAC clone: B6Ng01-121M12, 5' end.DH925377|Mus musculus domesticus DNA, BAC clone: B6Ng01-121M12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaacagaggaatctctaatagctgagtaacactgagagaaatg
ttcagcatccttagttatcggggaaatgaaaatcaaaatgactctgatat
tcttacactcattttaatggctaagatgaagaaaaaaaataaaaaaataa
aaacccaagtgacagttcaagctggcaagattgtaaagcaataggaacac
tcctccattgctggtgggaatgtttccagtttttacagacactttagaaa
taaatttggaggtttctcagaaaattggaaatagatctccctcaagactc
agaaataccagtcctggtcatatacccaaagaatggtctactgtaccaca
tgggctcttacacttgtttatagcagatttgttcataatagcaaggaact
caaacaaccccagatgtcccccaactaacgaatggataaaaacaatgtga
tacattcacacaatgagtatcacttagttattaaaacaaaatgtcttaat
gtcattatgatatttacagtcaaatggatgtaactaggacagttcatcct
gagtgaggtaactcagacccagagagacaaactcacttataatggctatt
agtcataaagtacatgataactgtgctacaaactatgacccaatgacgct
aagtaacaagaaaggtccaaggggcagggggaggtgcttgaatctcacag
ggtaattgattacacatcaagagtgtatggatgaaggcaaatgaatgggg
gaggggtgatggtgg

gaattcaggattccatagatgaaaaggacaccaagaattcagagcttgac
tcttagcttcaacagggtatggcctcctgaagctgcttccacaagagtcc
ctggagacctaaaaggacttcctagtaccctgttctgagggttcctgctt
cagtagcaatctcccattgattgatggcagaaggaattactcctctcctg
tcttaattacaaaaattgtacactatattcacaactataatggctgtact
gctctaggttattattctcctgttatcaagggttcgaatttatttcattt
ctatcccacatgacaatctgttttatccttatatcaatcctgaactgaca
ataattagtacatctaattcatactgtttgatgtatacctactccattct
tagagaaagcagctaagtacccagttggatggtcacaaatggattctgtc
attttaacaatgcatatctgaaacaaaggtagtagattaggagtgcagaa
ctctggacacacatctcagagaatgttccctgttgggagatggttttgtg
cactatgaattcagattctgatttctgggaaatctgggtgcagtctagac
tttgttgttgtctttattataaagtattttctgacttagtattttgtaaa
acattgttttccatcacctctgattggttaataaaccaaatggttattca
tccaataggcagcagagagaaaacaggacttctggatctagtgagagggg
gtctctggtgcggagcaaaatgtgagagattcaccagaagaaattcaaca
tgagtacgttgccaggggagtccatgaggacacagatggcaaggaagacc
aagatgacagagtatgtggctggaaattaggctggagaaatagggtgaac
acctcagatcctgcccaacttagtgtttgaagctttaataaatatactag
ttcatgtatttttgaagataagggcaatagaaaagccctcccacccatac
tttagagtcacaaggctatctgcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_9575288_9576332
seq2: B6Ng01-121M12.g_68_1093

seq1  GAATTCAGGATTCCATAGATGAAAAGGACACCAAGAATTCAGAGCTTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGATTCCATAGATGAAAAGGACACCAAGAATTCAGAGCTTGAC  50

seq1  TCTTAGCTTCAACAGGGTATGGCCTCCTGAAGCTGCTTCCACAAGAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCTTCAACAGGGTATGGCCTCCTGAAGCTGCTTCCACAAGAGTCC  100

seq1  CTGGAGACCTAAAAGGACTTCCTAGTACCCTGTTCTGAGGGTTCCTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGACCTAAAAGGACTTCCTAGTACCCTGTTCTGAGGGTTCCTGCTT  150

seq1  CAGTAGCAATCTCCCATTGATTGATGGCAGAAGGAATTACTCCTCTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCAATCTCCCATTGATTGATGGCAGAAGGAATTACTCCTCTCCTG  200

seq1  TCTTAATTACAAAAATTGTACACTATATTCACAACTATAATGGCTGTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTACAAAAATTGTACACTATATTCACAACTATAATGGCTGTACT  250

seq1  GCTCTAGGTTATTATTCTCCTGTTATCAAGGGTTCGAATTTATTTCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGGTTATTATTCTCCTGTTATCAAGGGTTCGAATTTATTTCATTT  300

seq1  CTATCCCACATGACAATCTGTTTTATCCTTATATCAATCCTGAACTGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCACATGACAATCTGTTTTATCCTTATATCAATCCTGAACTGACA  350

seq1  ATAATTAGTACATCTAATTCATACTGTTTGATGTATACCTACTCCATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAGTACATCTAATTCATACTGTTTGATGTATACCTACTCCATTCT  400

seq1  TAGAGAAAGCAGCTAAGTACCCAGTTGGATGGTCACAAATGGATTCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAGCAGCTAAGTACCCAGTTGGATGGTCACAAATGGATTCTGTC  450

seq1  ATTTTAACAATGCATATCTGAAACAAAGGTAGTAGATTAGGAGTGCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACAATGCATATCTGAAACAAAGGTAGTAGATTAGGAGTGCAGAA  500

seq1  CTCTGGACACACATCTCAGAGAATGTTCCCTGTTGGGAGATGGTTTTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGACACACATCTCAGAGAATGTTCCCTGTTGGGAGATGGTTTTGTG  550

seq1  CACTATGAATTCAGATTCTGATTTCTGGGAAATCTGGGTGCAGTCTAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGAATTCAGATTCTGATTTCTGGGAAATCTGGGTGCAGTCTAGAC  600

seq1  TTTGTTGTTGTCTTTATTATAAAGTATTTTCTGACTTAGTATTTTGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTGTCTTTATTATAAAGTATTTTCTGACTTAGTATTTTGTAAA  650

seq1  ACATTGTTTTCCATCACCTCTGATTGGTTAATAAACCAAATGGTTATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTTTTCCATCACCTCTGATTGGTTAATAAACCAAATGGTTATTCA  700

seq1  TCCAATAGGCAGCAGAGAGAAAACAGGACTTCTGGATCTAGTGAGAGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAGGCAGCAGAGAGAAAACAGGACTTCTGGATCTAGTGAGAGGGG  750

seq1  GTCTCTGGTGCGGAGCAAAATGTGAGAGATTCACCAGAAGAAATTCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGTGCGGAGCAAAATGTGAGAGATTCACCAGAAGAAATTCAACA  800

seq1  TGAGTACGTTGCCAGGGGAGTCCATGAGGACACAGATGGCAAGGAAGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACGTTGCCAGGGGAGTCCATGAGGACACAGATGGCAAGGAAGACC  850

seq1  AAGATGACAGAGTTATGTGGCTGGAAATTAGGCTGGAGAAAATAGGGTTG  900
      |||||||||||| ||||||||||||||||||||||||| |||||||| ||
seq2  AAGATGACAGAG-TATGTGGCTGGAAATTAGGCTGGAG-AAATAGGG-TG  897

seq1  AACACCTCAGATCCTGCCCAACTTAGTGTTTGAAGCTTTTAATAAATATA  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AACACCTCAGATCCTGCCCAACTTAGTGTTTGAAGC-TTTAATAAATATA  946

seq1  CTAGGTTTTCATGTAATTTTTTTGGAAGATAAAGGGGCAATAGAAAAGCC  1000
      ||||   ||||||||    |||| ||||||||  ||||||||||||||||
seq2  CTAG---TTCATGTA----TTTTTGAAGATAA--GGGCAATAGAAAAGCC  987

seq1  CTCCCACCCCCAATTACTTTAGAGTTCACAAGGGCTATCTGCATC  1045
      |||||||||     |||||||||| |||||| |||||||||||||
seq2  CTCCCACCC----ATACTTTAGAG-TCACAA-GGCTATCTGCATC  1026


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