BAC Information

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BAC

Clone NameB6Ng01-121P05
Chromosome11 (Build37)
Map Location 114,541,642 - 114,674,965
singlet/doubletdoublet
Overlap geneTtyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142
Upstream geneD11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739, LOC634710, 4932435O22Rik, Rpl38
Downstream geneGprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121P05.bB6Ng01-121P05.g
ACCDH925503DH925504
length585652
definitionDH925503|Mus musculus domesticus DNA, BAC clone: B6Ng01-121P05, 5' end.DH925504|Mus musculus domesticus DNA, BAC clone: B6Ng01-121P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,541,642 - 114,542,232)(114,674,315 - 114,674,965)
sequence
tgggagaagaccaggatgctcagctggaggcagatcggaggaaaaagcag
gctttagagctcagccccgtgggaaaagagccaaggtcaggatgaggaag
cccgttcattacatctgaacttgggagtcatggtcatcgggctgtcacgc
cagttccccaaggagttaacccttcccaggcttcaaggatgtgttctccc
tatagagcatgtggatagtccccctgcttcagccagaggctggcacgcca
ctgaaactgccatctgtactcccttgggggtctgtctacagcggccgctg
ctgtccccctagcctgagtaccagggtggcccggactacaaatgataaac
cagaaataatggaaggacctttgatgtcagagaggctaagtttggccatg
gtgctgggacaggcaggggtggggtggggcagtaggaggctaggggtgat
gtgagactggcctttctaagctctggcaattgcttgagggtgtatgagca
gaattctccactccccctccccctcccccactcccactctccctcccatc
ttgtccatgtgtactggttaggcctgttgagagca
gaattcattcagtagcctatcgtcagaaggggtaaaagactccctgcttt
gggtcaagaagaagggccctctccaggcggtggtggcacacgtctttaat
tccagcacttgggaggcagaggcaggcagatttctgagtttgaggccagc
ctggtctacaaagtgagttccaggacagccagggctacacagaaaacctt
gtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaggaggaggag
gaggcagagactctggggcctctcagggataatagtggtggggttgggat
gcagagagcctgttcttttctacctctgttcctgacacattgcgtgccac
tcccttggagagcaggatgcccaagtgctgcccaggacagaaaccattct
catggggtggggtaagtgtcctcatggagatgggttggggtagagcaagt
gagaccccagagacccagacaggaccaaatgagcccagatggactgaact
ccctgtagtggaaagggaaactaccattgctgaggtcagcaagaggacct
ggaccctgctggtcagatgaaagggatctttcaaacagctgtgctcagga
aaccactgtttgtgtgtgtgtgtgtgtgtgcacgagcacgttcgtgagtg
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_114541642_114542232
seq2: B6Ng01-121P05.b_50_640

seq1  GAATTCTGGGAGAAGACCAGGATGCTCAGCTGGAGGCAGATCGGAGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAGAAGACCAGGATGCTCAGCTGGAGGCAGATCGGAGGAAA  50

seq1  AAGCAGGCTTTAGAGCTCAGCCCCGTGGGAAAAGAGCCAAGGTCAGGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCTTTAGAGCTCAGCCCCGTGGGAAAAGAGCCAAGGTCAGGATG  100

seq1  AGGAAGCCCGTTCATTACATCTGAACTTGGGAGTCATGGTCATCGGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCCGTTCATTACATCTGAACTTGGGAGTCATGGTCATCGGGCTG  150

seq1  TCACGCCAGTTCCCCAAGGAGTTAACCCTTCCCAGGCTTCAAGGATGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCCAGTTCCCCAAGGAGTTAACCCTTCCCAGGCTTCAAGGATGTGT  200

seq1  TCTCCCTATAGAGCATGTGGATAGTCCCCCTGCTTCAGCCAGAGGCTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTATAGAGCATGTGGATAGTCCCCCTGCTTCAGCCAGAGGCTGGC  250

seq1  ACGCCACTGAAACTGCCATCTGTACTCCCTTGGGGGTCTGTCTACAGCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCACTGAAACTGCCATCTGTACTCCCTTGGGGGTCTGTCTACAGCGG  300

seq1  CCGCTGCTGTCCCCCTAGCCTGAGTACCAGGGTGGCCCGGACTACAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGCTGTCCCCCTAGCCTGAGTACCAGGGTGGCCCGGACTACAAATG  350

seq1  ATAAACCAGAAATAATGGAAGGACCTTTGATGTCAGAGAGGCTAAGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCAGAAATAATGGAAGGACCTTTGATGTCAGAGAGGCTAAGTTTG  400

seq1  GCCATGGTGCTGGGACAGGCAGGGGTGGGGTGGGGCAGTAGGAGGCTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGTGCTGGGACAGGCAGGGGTGGGGTGGGGCAGTAGGAGGCTAGG  450

seq1  GGTGATGTGAGACTGGCCTTTCTAAGCTCTGGCAATTGCTTGAGGGTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGTGAGACTGGCCTTTCTAAGCTCTGGCAATTGCTTGAGGGTGTA  500

seq1  TGAGCAGAATTCTCCACTCCCCCTCCCCCTCCCCCACTCCCACTCTCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGAATTCTCCACTCCCCCTCCCCCTCCCCCACTCCCACTCTCCCT  550

seq1  CCCATCCTGTCCATGTGTACTGGTTAGGCCTGTTGAGAGCA  591
      |||||| ||||||||||||||||||||||||||||||||||
seq2  CCCATCTTGTCCATGTGTACTGGTTAGGCCTGTTGAGAGCA  591

seq1: chr11_114674315_114674965
seq2: B6Ng01-121P05.g_68_719 (reverse)

seq1  CACACTCACGTACGTGCTCGTGCACACACACACACACACACACACAGTGG  50
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  CACACTCACGAACGTGCTCGTGCACACACACACACACACACAAACAGTGG  50

seq1  TTTCCTGAGCACAGCTGTTTG-AAGATCCCTTTCATCTGACCAGCAGGGT  99
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTCCTGAGCACAGCTGTTTGAAAGATCCCTTTCATCTGACCAGCAGGGT  100

seq1  CCAGGTCCTCTTGCTGACCTCAGCAATGGTAGTTTCCCTTTCCACTACAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCCTCTTGCTGACCTCAGCAATGGTAGTTTCCCTTTCCACTACAG  150

seq1  GGAGTTCAGTCCATCTGGGCTCATTTGGTCCTGTCTGGGTCTCTGGGGTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTCAGTCCATCTGGGCTCATTTGGTCCTGTCTGGGTCTCTGGGGTC  200

seq1  TCACTTGCTCTACCCCAACCCATCTCCATGAGGACACTTACCCCACCCCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGCTCTACCCCAACCCATCTCCATGAGGACACTTACCCCACCCCA  250

seq1  TGAGAATGGTTTCTGTCCTGGGCAGCACTTGGGCATCCTGCTCTCCAAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATGGTTTCTGTCCTGGGCAGCACTTGGGCATCCTGCTCTCCAAGG  300

seq1  GAGTGGCACGCAATGTGTCAGGAACAGAGGTAGAAAAGAACAGGCTCTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCACGCAATGTGTCAGGAACAGAGGTAGAAAAGAACAGGCTCTCT  350

seq1  GCATCCCAACCCCACCACTATTATCCCTGAGAGGCCCCAGAGTCTCTGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCCAACCCCACCACTATTATCCCTGAGAGGCCCCAGAGTCTCTGCC  400

seq1  TCCTCCTCCTCCTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTCCTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAG  450

seq1  ACAAGGTTTTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTTTTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACC  500

seq1  AGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTG  550

seq1  GAATTAAAGACGTGTGCCACCACCGCCTGGAGAGGGCCCTTCTTCTTGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAAGACGTGTGCCACCACCGCCTGGAGAGGGCCCTTCTTCTTGAC  600

seq1  CCAAAGCAGGGAGTCTTTTACCCCTTCTGACGATAGGCTACTGAATGAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCAGGGAGTCTTTTACCCCTTCTGACGATAGGCTACTGAATGAAT  650

seq1  TC  651
      ||
seq2  TC  652