BAC Information

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BAC

Clone NameB6Ng01-122B18
Chromosome11 (Build37)
Map Location 103,655,378 - 103,781,166
singlet/doubletdoublet
Overlap geneWnt3, Nsf, EG667631
Upstream geneGja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b
Downstream geneArf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122B18.bB6Ng01-122B18.g
ACCDH925624DH925625
length302988
definitionDH925624|Mus musculus domesticus DNA, BAC clone: B6Ng01-122B18, 5' end.DH925625|Mus musculus domesticus DNA, BAC clone: B6Ng01-122B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,655,378 - 103,655,679)(103,780,188 - 103,781,166)
sequence
aaggccagcctggtctatattgtaagttttagatcagccccgactacata
cattctcaccaaagggggtaagaaaatgaaagctcagagtgggtcggaga
gcttagtaggactatctatctctatctctatatccatatctatataattg
gaaagggctgaggaggaatagccttgcagttcagtacttgcctagcagtg
tgaagtcttgggtttaatctccagtactgaaagaaaaaaaaaatctattg
gaatttctttatttaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gt
gaattcctttgaagagaacatctttgtaacccgctgaaatctgacatgaa
taatgatgagtcattggaaagccatacagcgagttttttgttcatttctt
acttgaccagtataattcgtgactggaccataccccttgtccaaaatgaa
ttttaaaaatccatgttttgtatgtttttaagattaactttttggagctg
gagagatgggtcagcacttaagagcttttattgctcttgcagagaaccta
agcttggtttccagaacccacttctggacactcacagctgcctaggaccc
cagctctagggtatctgataccgctggcctctgagggcactcacgcacac
acacacacacacacacacacacacacacacacacacgataaaataaatct
tagagagtttttcttttttgatagtttcatacatgtatatacgttttcgt
catggttgccctcctagtgtcctcttgtgcccctcactattccctggcag
ttctgcttttatgtctttgtgtgcacgtgtgtatgcgcgcgtgcaagtgc
gcatgtgtcccgagttttcttaggcctgtttgcatgagtgtgggtgggaa
gttatttactggagcatgggcagtttatccatggccataccactgacgaa
aatgatacctttctccagatatcatgaactatccatagtccctctaggaa
ggggcgtggccctgtgcaccctcccctctcccatgatgaaaagctgacag
gtccaatcttatgcagcccttatgtgggacaacagattgggtggggtaac
gtcgatttgggctctaaggattgaacctcagggtggtcagacctagcagt
gagcaccgctagcccaagatgttcttcttgccccttctccatcctctggc
tctttcattctttgtactccatcctcttggggtggggggggagatcctaa
gaccgtcttgtgtttagctaggagtatgtgtgtgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_103655378_103655679
seq2: B6Ng01-122B18.b_55_356

seq1  AAGGCCAGCCTGGTCTATATTGTAAGTTTTAGATCAGCCCCGACTACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGCCTGGTCTATATTGTAAGTTTTAGATCAGCCCCGACTACATA  50

seq1  CATTCTCACCAAAGGGGGTAAGAAAATGAAAGCTCAGAGTGGGTCGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCACCAAAGGGGGTAAGAAAATGAAAGCTCAGAGTGGGTCGGAGA  100

seq1  GCTTAGTAGGACTATCTATCTCTATCTCTATATCCATATCTATATAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTAGGACTATCTATCTCTATCTCTATATCCATATCTATATAATTG  150

seq1  GAAAGGGCTGAGGAGGAATAGCCTTGCAGTTCAGTACTTGCCTAGCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGCTGAGGAGGAATAGCCTTGCAGTTCAGTACTTGCCTAGCAGTG  200

seq1  TGAAGTCTTGGGTTTAATCTCCAGTACTGAAAGAAAAAAAAAATCTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTTGGGTTTAATCTCCAGTACTGAAAGAAAAAAAAAATCTATTG  250

seq1  GAATTTCTTTATTTAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCTTTATTTAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  300

seq1  GT  302
      ||
seq2  GT  302

seq1: chr11_103780188_103781166
seq2: B6Ng01-122B18.g_67_1054 (reverse)

seq1  CACCCACACACATACTCATAGCTAAACACAAGACGGTCTTTAGGATCT--  48
      ||||||||||||||||| |||||||||||||||||||| |||||||||  
seq2  CACCCACACACATACTCCTAGCTAAACACAAGACGGTC-TTAGGATCTCC  49

seq1  CCCCCCACCCCAAGAGGATGGAGTACAAAGAATGAAAGAGCCAGAGGATG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACCCCAAGAGGATGGAGTACAAAGAATGAAAGAGCCAGAGGATG  99

seq1  GAG-AGGGGC-AGAAGAACATC-TGGGCTAGCGGTGCTCACTGCTAGGTC  145
      ||| |||||| ||||||||||| |||||||||||||||||||||||||||
seq2  GAGAAGGGGCAAGAAGAACATCTTGGGCTAGCGGTGCTCACTGCTAGGTC  149

seq1  TGA-CAACCTGA-GTTCAATCCTTAGAG-CCAAATCGACGTTAACCCA-C  191
      ||| || ||||| ||||||||||||||| |||||||||||||| |||| |
seq2  TGACCACCCTGAGGTTCAATCCTTAGAGCCCAAATCGACGTTACCCCACC  199

seq1  CAATCTGTTGT-CCACATAAGGGCTGCATAAGATTGGACCTGTCAGCTTT  240
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGTTGTCCCACATAAGGGCTGCATAAGATTGGACCTGTCAGCTTT  249

seq1  TCATCATGGGAGAGGGGAGGGTGCACAGGGCCACGCCCCTTCCTAGAGGG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATGGGAGAGGGGAGGGTGCACAGGGCCACGCCCCTTCCTAGAGGG  299

seq1  ACTATGGATAGTTCATGATATCTGGAGAAAGGTATCATTTTCGTCAGTGG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGATAGTTCATGATATCTGGAGAAAGGTATCATTTTCGTCAGTGG  349

seq1  TATGGCCATGGATAAACTGCCCATGCTCCAGTAAATAACTTCCCACCCAC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCCATGGATAAACTGCCCATGCTCCAGTAAATAACTTCCCACCCAC  399

seq1  ACTCATGCAAACAGGCCTAAGAAAACTCGGGACACATGCGCACTTGCACG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGCAAACAGGCCTAAGAAAACTCGGGACACATGCGCACTTGCACG  449

seq1  CGCGCATACACACGTGCACACAAAGACATAAAAGCAGAACTGCCAGGGAA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCATACACACGTGCACACAAAGACATAAAAGCAGAACTGCCAGGGAA  499

seq1  TAGTGAGGGGCACAAGAGGACACTAGGAGGGCAACCATGACGAAAACGTA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGGGGCACAAGAGGACACTAGGAGGGCAACCATGACGAAAACGTA  549

seq1  TATACATGTATGAAACTATCAAAAAAGAAAAACTCTCTAAGATTTATTTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATGTATGAAACTATCAAAAAAGAAAAACTCTCTAAGATTTATTTT  599

seq1  ATCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGAG  649

seq1  TGCCCTCAGAGGCCAGCGGTATCAGATACCCTAGAGCTGGGGTCCTAGGC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCAGAGGCCAGCGGTATCAGATACCCTAGAGCTGGGGTCCTAGGC  699

seq1  AGCTGTGAGTGTCCAGAAGTGGGTTCTGGAAACCAAGCTTAGGTTCTCTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGAGTGTCCAGAAGTGGGTTCTGGAAACCAAGCTTAGGTTCTCTG  749

seq1  CAAGAGCAATAAAAGCTCTTAAGTGCTGACCCATCTCTCCAGCTCCAAAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGCAATAAAAGCTCTTAAGTGCTGACCCATCTCTCCAGCTCCAAAA  799

seq1  AGTTAATCTTAAAAACATACAAAACATGGATTTTTAAAATTCATTTTGGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATCTTAAAAACATACAAAACATGGATTTTTAAAATTCATTTTGGA  849

seq1  CAAGGGGTATGGTCCAGTCACGAATTATACTGGTCAAGTAAGAAATGAAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGTATGGTCCAGTCACGAATTATACTGGTCAAGTAAGAAATGAAC  899

seq1  AAAAAACTCGCTGTATGGCTTTCCAATGACTCATCATTATTCATGTCAGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTCGCTGTATGGCTTTCCAATGACTCATCATTATTCATGTCAGA  949

seq1  TTTCAGCGGGTTACAAAGATGTTCTCTTCAAAGGAATTC  979
      |||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCGGGTTACAAAGATGTTCTCTTCAAAGGAATTC  988