BAC Information

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BAC

Clone NameB6Ng01-123D09
Chromosome11 (Build37)
Map Location 41,228,986 - 41,343,499
singlet/doubletdoublet
Overlap geneHspd1
Upstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256, LOC100039285
Downstream geneLOC100039292, Gabrg2, Gabra1, Gabra6, Gabrb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123D09.bB6Ng01-123D09.g
ACCDH926438DH926439
length1,1331,000
definitionDH926438|Mus musculus domesticus DNA, BAC clone: B6Ng01-123D09, 5' end.DH926439|Mus musculus domesticus DNA, BAC clone: B6Ng01-123D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,342,360 - 41,343,499)(41,228,986 - 41,230,292)
sequence
gaattccagtgtctatacctagccataaagacctactatgctgtcccaaa
gtggacaatgtttgggtttacagcttagaccagaatctcagagcctactc
ctcatcaaaaattgctttatattttgctcatggtcttaaaggcttatacc
atcttcagacactgctggagttcttcacatttaggacttaaatctttcct
tgaatgtgatgttttcctttttgctgttcttataatagattttcagaagc
tcaattttcatacattttatatatccgcacagttcatgtacttaaaatgt
attggcttcaagtatattcacctagataggaatacatgaccacaaacaaa
tttagaaaataattactgaaccagaatgaaaacctagaaaacagactgtg
cttatctataattttcctcctcatatcatctccagccataggaaaccatg
actctatcttaatatctatgtttatctattctaaatattaaaaatagtca
caaagagcacaatatatgccctttataactagtctcaatcaggtaaaaat
ttttttcaaatgccattcataccataccatgcacaactattccttttcat
ttctgaataatattcctatgatgtctatataccatactctgattttttcc
ttaattaactgtcagatatgtggactatatttgacttttatttatctcta
acaaatctgctatgaaaatccacatataagcacttatctttcaacctgtg
catgagtttcttgtctaaggtgtacatatagaagttctgggtaaatggca
attcctcagctaacagcttcactttacaaccaactaataacaaaatactg
ctctggggtctccacagtttttataatccttgaactgtctttttcattct
ggaactcctaggagtatattatgttatttcatcaagtctcatttacattt
tttggctagttaatgatgtagaggaaattttcatttgttatagctatttt
catattttttctaaaaatttttctacttagaattaacatttaggcagtga
ctatcaatagcattttaaaaattaaggcatgagcttgaaatggatttatg
gagttaaggtgcttggttgtggaaatctaggac
gaattcctgggggatgggggaagaatccatgatggaaattaagaggaaga
acatgtctattttggaacaagataagaggaatatttatatgtaaagtggg
cacattaagaagaaagaacaaatgggaaaaatagcctgtcaacttatgat
atataaacatatcacatgtatgtataatatatggacattacataatgtgt
gtataaaaacatgatacataattaaataccttttgatgaagcacagaaac
atacatactttgataaagcccataaatatacacataagtgaatttctaaa
ttctgggtttaatatttcaagtaaatgatagtattatgttttaggtagag
actgactacagcattgctagatttttcagactctgtgaatttgctaaatt
tttttaaaacatgggagaaaagtagaggagaaaaggaaaaaaagtggaag
aaagggacggaaagctggaaggatcatttcaacagagaggtcctccttgt
cctttcacatatgtagattctgtaaaatatttatttgaaaacaggattag
atttcttaacgttttggaacaaaacattattctttattcagggtttcagg
tttgattatatagatatcattgttttattctgaggatgaggcaaaatatc
taaatataatgatttatagctatcatagagatatagacatattgtctctc
tagctccttttgattcatgcttctttgcagtcacatataacagagtaata
gaataagatataaaagccccatcaaaaggaagattattatcctattggta
tcagttagagaaacaagtgttagattttcatagtgaccaggttttagaga
gatatcttacatctatatagatgtggcacctgtcaataataaatcttgat
ggccaatggcttatgcaggcaatagaagataggaactcttgggagaagaa
cgaattttagggtagagccaggtattgggaagatccaccccaggaagatg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_41342360_41343499
seq2: B6Ng01-123D09.b_47_1179 (reverse)

seq1  GTCCTATGATTT-CACAACC-AGCACTTTAACT-CATTAATCCATTTTCA  47
      |||||| ||||| ||||||| ||||| |||||| ||| |||||| |||||
seq2  GTCCTA-GATTTCCACAACCAAGCACCTTAACTCCATAAATCCA-TTTCA  48

seq1  AGCTTCATGCTTTAATTTTTAAAATGCTATTTGATAGTCACTGCCTTAAA  97
      ||| |||||| |||||||||||||||||| ||||||||||||||| ||||
seq2  AGC-TCATGCCTTAATTTTTAAAATGCTA-TTGATAGTCACTGCC-TAAA  95

seq1  TGTTAATTTCTAAGTAGATAATTTTTTTAGAAAAAATATGAAAATAGCTA  147
      |||||| ||||||||||| ||  |||||||||||||||||||||||||||
seq2  TGTTAA-TTCTAAGTAGA-AAAATTTTTAGAAAAAATATGAAAATAGCTA  143

seq1  ATAAACAAATGAAAATTTCCTCTACATCATTAACTAGCCAAAAAATGTAA  197
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  --TAACAAATGAAAATTTCCTCTACATCATTAACTAGCCAAAAAATGTAA  191

seq1  ATGAGACTTGATGAAATAACATAATATACTCCCTAGGAGTTCCAGAATGA  247
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGAGACTTGATGAAATAACATAATATACT-CCTAGGAGTTCCAGAATGA  240

seq1  AAAAGACAGTTCAAGGATTATAAAAACTGTGGAGACCCCAGAGCAGTATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAGTTCAAGGATTATAAAAACTGTGGAGACCCCAGAGCAGTATT  290

seq1  TTGTTATTAGTTGGTTGTAAAGTGAAGCTGTTAGCTGAGGAATTGCCATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTAGTTGGTTGTAAAGTGAAGCTGTTAGCTGAGGAATTGCCATT  340

seq1  TACCCAGAACTTCTATATGTACACCTTAGACAAGAAACTCATGCACAGGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGAACTTCTATATGTACACCTTAGACAAGAAACTCATGCACAGGT  390

seq1  TGAAAGATAAGTGCTTATATGTGGATTTTCATAGCAGATTTGTTAGAGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATAAGTGCTTATATGTGGATTTTCATAGCAGATTTGTTAGAGAT  440

seq1  AAATAAAAGTCAAATATAGTCCACATATCTGACAGTTAATTAAGGAAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGTCAAATATAGTCCACATATCTGACAGTTAATTAAGGAAAAA  490

seq1  ATCAGAGTATGGTATATAGACATCATAGGAATATTATTCAGAAATGAAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGTATGGTATATAGACATCATAGGAATATTATTCAGAAATGAAAA  540

seq1  GGAATAGTTGTGCATGGTATGGTATGAATGGCATTTGAAAAAAATTTTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGTTGTGCATGGTATGGTATGAATGGCATTTGAAAAAAATTTTTA  590

seq1  CCTGATTGAGACTAGTTATAAAGGGCATATATTGTGCTCTTTGTGACTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTGAGACTAGTTATAAAGGGCATATATTGTGCTCTTTGTGACTAT  640

seq1  TTTTAATATTTAGAATAGATAAACATAGATATTAAGATAGAGTCATGGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATATTTAGAATAGATAAACATAGATATTAAGATAGAGTCATGGTT  690

seq1  TCCTATGGCTGGAGATGATATGAGGAGGAAAATTATAGATAAGCACAGTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGGCTGGAGATGATATGAGGAGGAAAATTATAGATAAGCACAGTC  740

seq1  TGTTTTCTAGGTTTTCATTCTGGTTCAGTAATTATTTTCTAAATTTGTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTAGGTTTTCATTCTGGTTCAGTAATTATTTTCTAAATTTGTTT  790

seq1  GTGGTCATGTATTCCTATCTAGGTGAATATACTTGAAGCCAATACATTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCATGTATTCCTATCTAGGTGAATATACTTGAAGCCAATACATTTT  840

seq1  AAGTACATGAACTGTGCGGATATATAAAATGTATGAAAATTGAGCTTCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATGAACTGTGCGGATATATAAAATGTATGAAAATTGAGCTTCTG  890

seq1  AAAATCTATTATAAGAACAGCAAAAAGGAAAACATCACATTCAAGGAAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTATTATAAGAACAGCAAAAAGGAAAACATCACATTCAAGGAAAG  940

seq1  ATTTAAGTCCTAAATGTGAAGAACTCCAGCAGTGTCTGAAGATGGTATAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGTCCTAAATGTGAAGAACTCCAGCAGTGTCTGAAGATGGTATAA  990

seq1  GCCTTTAAGACCATGAGCAAAATATAAAGCAATTTTTGATGAGGAGTAGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAAGACCATGAGCAAAATATAAAGCAATTTTTGATGAGGAGTAGG  1040

seq1  CTCTGAGATTCTGGTCTAAGCTGTAAACCCAAACATTGTCCACTTTGGGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGATTCTGGTCTAAGCTGTAAACCCAAACATTGTCCACTTTGGGA  1090

seq1  CAGCATAGTAGGTCTTTATGGCTAGGTATAGACACTGGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAGTAGGTCTTTATGGCTAGGTATAGACACTGGAATTC  1133

seq1: chr11_41228986_41230292
seq2: B6Ng01-123D09.g_69_1068

seq1  GAATTCCTGGGGGATGGGGGAAGAATCCATGATGGAAATTAAGAGGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGGGATGGGGGAAGAATCCATGATGGAAATTAAGAGGAAGA  50

seq1  ACATGTCTATTTTGGAACAAGATAAGAGGAATATTTATATGTAAAGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCTATTTTGGAACAAGATAAGAGGAATATTTATATGTAAAGTGGG  100

seq1  CACATTAAGAAGAAAGAACAAATGGGAAAAATAGCCTGTCAACTTATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTAAGAAGAAAGAACAAATGGGAAAAATAGCCTGTCAACTTATGAT  150

seq1  ATATAAACATATCACATGTATGTATAATATATGGACATTACATAATGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAACATATCACATGTATGTATAATATATGGACATTACATAATGTGT  200

seq1  GTATAAAAACATGATACATAATTAAATACCTTTTGATGAAGCACAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAAACATGATACATAATTAAATACCTTTTGATGAAGCACAGAAAC  250

seq1  ATACATACTTTGATAAAGCCCATAAATATACACATAAGTGAATTTCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACTTTGATAAAGCCCATAAATATACACATAAGTGAATTTCTAAA  300

seq1  TTCTGGGTTTAATATTTCAAGTAAATGATAGTATTATGTTTTAGGTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTTTAATATTTCAAGTAAATGATAGTATTATGTTTTAGGTAGAG  350

seq1  ACTGACTACAGCATTGCTAGATTTTTCAGACTCTGTGAATTTGCTAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTACAGCATTGCTAGATTTTTCAGACTCTGTGAATTTGCTAAATT  400

seq1  TTTTTAAAACATGGGAGAAAAGTAGAGGAGAAAAGGAAAAAAAGTGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAACATGGGAGAAAAGTAGAGGAGAAAAGGAAAAAAAGTGGAAG  450

seq1  AAAGGGACGGAAAGCTGGAAGGATCATTTCAACAGAGAGGTCCTCCTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGACGGAAAGCTGGAAGGATCATTTCAACAGAGAGGTCCTCCTTGT  500

seq1  CCTTTCACATATGTAGATTCTGTAAAATATTTATTTGAAAACAGGATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACATATGTAGATTCTGTAAAATATTTATTTGAAAACAGGATTAG  550

seq1  ATTTCTTAACGTTTTGGAACAAAACATTATTCTTTATTCAGGGTTTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTAACGTTTTGGAACAAAACATTATTCTTTATTCAGGGTTTCAGG  600

seq1  TTTGATTATATAGATATCATTG-TTTATTCTGAGGATGAGGCAAAATATC  649
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTGATTATATAGATATCATTGTTTTATTCTGAGGATGAGGCAAAATATC  650

seq1  TAAATATAATGATTTATAGCTATCATAGAGATATAGACATATTGTCTCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAATGATTTATAGCTATCATAGAGATATAGACATATTGTCTCTC  700

seq1  TAGCTCCTTTTGATTCATGCTTCTTTGCAGTCACATATAACAGAGTAATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCTTTTGATTCATGCTTCTTTGCAGTCACATATAACAGAGTAATA  750

seq1  GAATAAGATATAAAAGCCCCATC-AAAGGAAGATTATTATCCTATTGGTA  798
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAATAAGATATAAAAGCCCCATCAAAAGGAAGATTATTATCCTATTGGTA  800

seq1  TCAGTTAGAGAAACAAGTGTGAGATTTTTCATAGTGAACAGGTTTTAGAG  848
      |||||||||||||||||||| ||| |||||||||||| ||||||||||||
seq2  TCAGTTAGAGAAACAAGTGTTAGA-TTTTCATAGTGACCAGGTTTTAGAG  849

seq1  AGAATATCTTACATCTATATAGATGTGGCACCTGTCAATAATAAATC-TG  897
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AG-ATATCTTACATCTATATAGATGTGGCACCTGTCAATAATAAATCTTG  898

seq1  ATGGCCAATGGCTTATGCAGGCAATAGAAGATAGGACATC-TGGGAGGAG  946
      ||||||||||||||||||||||||||||||||||||  || |||||| ||
seq2  ATGGCCAATGGCTTATGCAGGCAATAGAAGATAGGAACTCTTGGGAGAAG  948

seq1  AACGAATTTTAGGGTAGAGCCAGGTA-TGGGAAGATCCA-CCCAGGAAGA  994
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  AACGAATTTTAGGGTAGAGCCAGGTATTGGGAAGATCCACCCCAGGAAGA  998

seq1  TGTGAGGAGACAGACATAAAATACCTAAGCACAGGTAACCCATGTAGCTG  1044
      ||                                                
seq2  TG------------------------------------------------  1000

seq1  AATGGGAAGTTAATACTTTATCTAAATTTCCAAATATAAGTAGGCTGAAG  1094
                                                        
seq2  --------------------------------------------------  1000

seq1  ATTATGAATTTAACTCCCACCTAATAGTTTTCATAATTGTTATTGTATTT  1144
                                                        
seq2  --------------------------------------------------  1000

seq1  AAGTTTTATTTGAAAGAAAAGAAGCCTTTTCTTGAACTAAAAAGGGGAAT  1194
                                                        
seq2  --------------------------------------------------  1000

seq1  TGTGGCAAGAATAACTTATGGCTGTACAAATGTGACACCTGTCCTTTAGA  1244
                                                        
seq2  --------------------------------------------------  1000

seq1  ATGCATATGGCCTATAGCTTAGGCAGGAAATAGAAAATGGTACATCCAGG  1294
                                                        
seq2  --------------------------------------------------  1000

seq1  AGCCAGGAAGATG  1307
                   
seq2  -------------  1000