BAC Information

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BAC

Clone NameB6Ng01-123G12
Chromosome11 (Build37)
Map Location 81,150,251 - 81,293,530
singlet/doubletdoublet
Overlap geneAccn1
Upstream geneRhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3
Downstream gene1700071K01Rik, 5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1, Tmem132e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123G12.bB6Ng01-123G12.g
ACCDH926578DH926579
length1,172435
definitionDH926578|Mus musculus domesticus DNA, BAC clone: B6Ng01-123G12, 5' end.DH926579|Mus musculus domesticus DNA, BAC clone: B6Ng01-123G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,292,352 - 81,293,530)(81,150,251 - 81,150,691)
sequence
gaattccatggaaactttctaattaggtaatcttaaagcatatgtacaca
cacacacacacacacacacacacacacacacacacacacacacatatata
tatatatgatatattttcccattcagtacatgtctcattagtgatgttcc
caagcatctgatgtcccagatactgtctgcacagcgtggctttctttagg
atacatttgcttttgtgttattaactttcaccttgaaggggcaaattttg
tgatcttcttttcttcaggaactatctgctaggtagcatgtttttcagag
ccagtcatcacaggaagttataaaatgcagtctgcagatagccatgggta
gagtgcttgcctaccattgcagagtcttggattcaatccctctggctaca
taaactgggcctggtttatagaatctggaatcccagtcctcaggaggcag
aagcagagatgtcagaagttcaaggtcaccctcaggtacagagcaagttt
atgggtttatggccagcctgaactgtatgttaccccatagtaaaaggaaa
ggcatcatcaaatttgttttaaacaacagaaacacaaagtctgctgtgaa
tatggctcctatttgggggatttaatgtgatatcagaagtcttgagatat
tataaagacttctaatgattgagtatattcctgaattttcatttttagct
aaagatttaattttaaaacacaggtatgggggcagacaccagtgcagatg
cttatagaggccagaagagagcataagagccactcaatatgggaacagag
tttgtgtcctttgggagatcatcgagtgctcttaattagtgagccacccc
tccagcctgagctcttgcctttcataggtattagcacactgagaccctgg
cagcctttactcctgtctccatctctcaggacacctcttacctagtatga
agcagtgaaatcataggtgtctctccccaccttatttaaattactatcac
cacagccagtcagcagagatcatgtgtacatattgttttacactgaagtg
tgtgcttttcattaaaagtggatctgttaattgagaactataactttctc
aattcatacaggttgtgttggctttttctctttcgggttaagaaagtggt
tctctccagttggaatctaatt
ttggtcctctgcagtaaccctaaagcctgtcccacctctgaggctgaggg
tgttcatgtacatcattgatgctttgcgtccccactgggcaagtcagtgg
aaagcactggaaagcacacagctggaaagcaccccagggagtcagagagt
tggctgtcttacctgttgtctctatcccaactccagacaaagtgaagtgc
aatctactgacaagatcagctgttttgaaggctagactgactctggatct
ttcccaggccgccattttacataaggccagagaagcccaagacccagagg
agtccttggggcacctgaaagtcttaacacttttatttgtcacaggaaaa
caggttcagagagacggcaagggtggctcgagttcacaatgagttgacag
gttggtgactatagggatggtgggtagggtagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_81292352_81293530
seq2: B6Ng01-123G12.b_42_1213 (reverse)

seq1  AATTAGATTCCAAACTATGAAGAACCACTTTTCTTAAACACCGAAAGGGA  50
      ||||||||||| ||||    |||||||| ||||||||   ||||||| ||
seq2  AATTAGATTCC-AACTGGAGAGAACCAC-TTTCTTAA--CCCGAAAGAGA  46

seq1  AAAAAGCAACAACAAACCTCTGATGTATTTGAAAAGTTATAG-TCTCAA-  98
      ||||  |||||   ||||| | ||| |||   |||||||||| |||||| 
seq2  AAAAGCCAACA--CAACCTGT-ATGAATTGAGAAAGTTATAGTTCTCAAT  93

seq1  TAACAGATCACTTTTTAATGAAAAAGCACAACACTTTCAGTGTAAAAC-A  147
      |||||||||   |||||||| |||||||| |||| ||||||||||||| |
seq2  TAACAGATCCACTTTTAATG-AAAAGCAC-ACAC-TTCAGTGTAAAACAA  140

seq1  TATGTACACATGATCTCTGCTGACTGGCTGTGTTGATAGTAATTTAAATA  197
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TATGTACACATGATCTCTGCTGACTGGCTGTGGTGATAGTAATTTAAATA  190

seq1  AGGTTGGGGAGAGACACCTATGATTTCACTGCTTCATTACTAGGTAAGAG  247
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGG-TGGGGAGAGACACCTATGATTTCACTGCTTCA-TACTAGGTAAGAG  238

seq1  GTGTCCCTGAGAGATGGAGACAGGAGTAAAGGCTGCCAGGGTCTCAGTGT  297
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGT-CCTGAGAGATGGAGACAGGAGTAAAGGCTGCCAGGGTCTCAGTGT  287

seq1  GCTAATACCTATG-AAGGCAAGAGCTCAGGCTGGAGGGGTGGCTCACTAA  346
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GCTAATACCTATGAAAGGCAAGAGCTCAGGCTGGAGGGGTGGCTCACTAA  337

seq1  TTAAGAGCACTCGATGATCTTCCAAAGGACACAAACTCTGTTCCCATATT  396
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTAAGAGCACTCGATGATCTCCCAAAGGACACAAACTCTGTTCCCATATT  387

seq1  GAGTGGCTCTTATGCTCTCTTCTGGCCTCTATAAGCATCTGCACTGGTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCTCTTATGCTCTCTTCTGGCCTCTATAAGCATCTGCACTGGTGT  437

seq1  CTGCCCCCATACCTGTGTTTTAAAATTAAATCTTTAGCTAAAAATGAAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCCATACCTGTGTTTTAAAATTAAATCTTTAGCTAAAAATGAAAA  487

seq1  TTCAGGAATATACTCAATCATTAGAAGTCTTTATAATATCTCAAGACTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAATATACTCAATCATTAGAAGTCTTTATAATATCTCAAGACTTC  537

seq1  TGATATCACATTAAATCCCCCAAATAGGAGCCATATTCACAGCAGACTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCACATTAAATCCCCCAAATAGGAGCCATATTCACAGCAGACTTT  587

seq1  GTGTTTCTGTTGTTTAAAACAAATTTGATGATGCCTTTCCTTTTACTATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTGTTGTTTAAAACAAATTTGATGATGCCTTTCCTTTTACTATG  637

seq1  GGGTAACATACAGTTCAGGCTGGCCATAAACCCATAAACTTGCTCTGTAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAACATACAGTTCAGGCTGGCCATAAACCCATAAACTTGCTCTGTAC  687

seq1  CTGAGGGTGACCTTGAACTTCTGACATCTCTGCTTCTGCCTCCTGAGGAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGTGACCTTGAACTTCTGACATCTCTGCTTCTGCCTCCTGAGGAC  737

seq1  TGGGATTCCAGATTCTATAAACCAGGCCCAGTTTATGTAGCCAGAGGGAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTCCAGATTCTATAAACCAGGCCCAGTTTATGTAGCCAGAGGGAT  787

seq1  TGAATCCAAGACTCTGCAATGGTAGGCAAGCACTCTACCCATGGCTATCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCAAGACTCTGCAATGGTAGGCAAGCACTCTACCCATGGCTATCT  837

seq1  GCAGACTGCATTTTATAACTTCCTGTGATGACTGGCTCTGAAAAACATGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTGCATTTTATAACTTCCTGTGATGACTGGCTCTGAAAAACATGC  887

seq1  TACCTAGCAGATAGTTCCTGAAGAAAAGAAGATCACAAAATTTGCCCCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAGCAGATAGTTCCTGAAGAAAAGAAGATCACAAAATTTGCCCCTT  937

seq1  CAAGGTGAAAGTTAATAACACAAAAGCAAATGTATCCTAAAGAAAGCCAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTGAAAGTTAATAACACAAAAGCAAATGTATCCTAAAGAAAGCCAC  987

seq1  GCTGTGCAGACAGTATCTGGGACATCAGATGCTTGGGAACATCACTAATG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCAGACAGTATCTGGGACATCAGATGCTTGGGAACATCACTAATG  1037

seq1  AGACATGTACTGAATGGGAAAATATATCATATATATATATA--TGTGTGT  1094
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  AGACATGTACTGAATGGGAAAATATATCATATATATATATATGTGTGTGT  1087

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATATGCTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATATGCTT  1137

seq1  TAAGATTACCTAATTAGAAAGTTTCCATGGAATTC  1179
      |||||||||||||||||||||||||||||||||||
seq2  TAAGATTACCTAATTAGAAAGTTTCCATGGAATTC  1172

seq1: chr11_81150251_81150691
seq2: B6Ng01-123G12.g_69_509

seq1  GAATTCTTGGTCCTCTGCAGTAACCCTAAAGCCTGTCCCACCTCTGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTCCTCTGCAGTAACCCTAAAGCCTGTCCCACCTCTGAGGC  50

seq1  TGAGGGTGTTCATGTACATCATTGATGCTTTGCGTCCCCACTGGGCAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTGTTCATGTACATCATTGATGCTTTGCGTCCCCACTGGGCAAGT  100

seq1  CAGTGGAAAGCACTGGAAAGCACACAGCTGGAAAGCACCCCAGGGAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAAGCACTGGAAAGCACACAGCTGGAAAGCACCCCAGGGAGTCA  150

seq1  GAGAGTTGGCTGTCTTACCTGTTGTCTCTATCCCAACTCCAGACAAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTGGCTGTCTTACCTGTTGTCTCTATCCCAACTCCAGACAAAGTG  200

seq1  AAGTGCAATCTACTGACAAGATCAGCTGTTTTGAAGGCTAGACTGACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCAATCTACTGACAAGATCAGCTGTTTTGAAGGCTAGACTGACTCT  250

seq1  GGATCTTTCCCAGGCCGCCATTTTACATAAGGCCAGAGAAGCCCAAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTCCCAGGCCGCCATTTTACATAAGGCCAGAGAAGCCCAAGACC  300

seq1  CAGAGGAGTCCTTGGGGCACCTGAAAGTCTTAACACTTTTATTTGTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGTCCTTGGGGCACCTGAAAGTCTTAACACTTTTATTTGTCACA  350

seq1  GGAAAACAGGTTCAGAGAGACGGCAAGGGTGGCTCGAGTTCACAATGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACAGGTTCAGAGAGACGGCAAGGGTGGCTCGAGTTCACAATGAGT  400

seq1  TGACAGGTTGGTGACTATAGGGATGGTGGGTAGGGTAGAGT  441
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGTTGGTGACTATAGGGATGGTGGGTAGGGTAGAGT  441