BAC Information

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BAC

Clone NameB6Ng01-124E06
Chromosome11 (Build37)
Map Location 113,965,681 - 114,100,989
singlet/doubletdoublet
Overlap genenone
Upstream gene2610035D17Rik, Slc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739
Downstream geneLOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124E06.bB6Ng01-124E06.g
ACCDH927216DH927217
length1,033697
definitionDH927216|Mus musculus domesticus DNA, BAC clone: B6Ng01-124E06, 5' end.DH927217|Mus musculus domesticus DNA, BAC clone: B6Ng01-124E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,965,681 - 113,966,695)(114,100,294 - 114,100,989)
sequence
gaattccttgcagaaacacaatccatcacaggaaaatggaaaatctgaat
agtattcgttatattggttctaaaaaattgaacttaagagcaactcagca
ggaagaaagaaatacccactatggtttgctagtgagttctctcaaaattt
taaggtggagtgcatatctcactcccaggtatatatgacatatgaggggt
ggagacccccattcacttcctgaggtcagcatatttccaagactaaatcc
aacatacttctaggaaaggaagcaattaaccaagggcattcacaaacttc
atttatttagagacatagtttcaccacgaagagcactggttggttttgaa
ctcattatctagatcgggctggccttgaatatatggcatctgtctgcctc
ctgagtgttgggattaaaagtgtgtgccattacaccttgaaactaatatt
taattaattaattatatatatatacacacacacatacaccacacacatac
atatttttgcatgtatgtgtctggtgcccatggtcaaaatatggtgtcag
atcccctgaaaatgaagttactggatgtagtgagccactgtgtctgggaa
ccaaacctaggcctttcagcagataaaacaaatgcttctaactattgagc
catctttcgtaccctgaccagtaatattttttaaaaataacacattaata
tgaggttaatttaacattcataactaagttcatgtgtctgggggcatagc
tcagtggtggctgcacacccggtttgtgtaaaaatctgggattggatctt
cagtactactgaaaaatttaatgtgagacaagcttccatgtaaagagacc
aagcaggaaaaatatcttagtctccttagtaaacacgggaaatatatttg
agaaactcactctctcccatgatagaaagactttgtatcacccttaaata
acaacatacttgttatttaataagaggcatattaaaaagtcaaagttaaa
tcatacttgtgagtaccacctaagtcctttttt
gaattccaggccggcagcagcgtgtgccttggataaagttcaggtaatcg
tgcctgcagcctgccccctccctcccttgttctccctccccagctctggg
ctgacagagttataataattgggtgcctctgcttaagctcatcagctctg
gcttcctgaaaggaacgtggcaattagcagtcctcaccctgtaataaagc
ctttaatatccactttcatggttcatattacagtcattcaggcctgtccc
cttgcacatggcctgtcaggcagcggggctgtggatgcccactagggagc
tgcccccactgaatggctcagcacacaatggttgcagaggctccagcaat
ccaggccaggcagctggggaatagggctgggaaatgagaagggatatttc
tgcccactgaggttccagggggctgatggaggaggggggcagggggcagg
gggcaagtatccttacttctcccgtaagtgtcccattatcccactacccc
tccgggctttcttacccttgagtcacccctcctcagtttcattactgggt
atttagaagcacaaggagatggaggtggtgctgagggggaaatggatact
tcaagatggaatctgctcgtatgtatgcctgctggttgggtctctcactt
cccaagggagagcagtatatgggagcacgttttgtcgtagggagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_113965681_113966695
seq2: B6Ng01-124E06.b_45_1059

seq1  GAATTCCTTGCAGAAACACAATCCATCACAGGAAAATGGAAAATCTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGCAGAAACACAATCCATCACAGGAAAATGGAAAATCTGAAT  50

seq1  AGTATTCGTTATATTGGTTCTAAAAAATTGAACTTAAGAGCAACTCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCGTTATATTGGTTCTAAAAAATTGAACTTAAGAGCAACTCAGCA  100

seq1  GGAAGAAAGAAATACCCACTATGGTTTGCTAGTGAGTTCTCTCAAAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGAAATACCCACTATGGTTTGCTAGTGAGTTCTCTCAAAATTT  150

seq1  TAAGGTGGAGTGCATATCTCACTCCCAGGTATATATGACATATGAGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGGAGTGCATATCTCACTCCCAGGTATATATGACATATGAGGGGT  200

seq1  GGAGACCCCCATTCACTTCCTGAGGTCAGCATATTTCCAAGACTAAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCCCCATTCACTTCCTGAGGTCAGCATATTTCCAAGACTAAATCC  250

seq1  AACATACTTCTAGGAAAGGAAGCAATTAACCAAGGGCATTCACAAACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACTTCTAGGAAAGGAAGCAATTAACCAAGGGCATTCACAAACTTC  300

seq1  ATTTATTTAGAGACATAGTTTCACCACGAAGAGCACTGGTTGGTTTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTAGAGACATAGTTTCACCACGAAGAGCACTGGTTGGTTTTGAA  350

seq1  CTCATTATCTAGATCGGGCTGGCCTTGAATATATGGCATCTGTCTGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATCTAGATCGGGCTGGCCTTGAATATATGGCATCTGTCTGCCTC  400

seq1  CTGAGTGTTGGGATTAAAAGTGTGTGCCATTACACCTTGAAACTAATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGTTGGGATTAAAAGTGTGTGCCATTACACCTTGAAACTAATATT  450

seq1  TAATTAATTAATTATATATATATACACACACACATACACCACACACATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTAATTATATATATATACACACACACATACACCACACACATAC  500

seq1  ATATTTTTGCATGTATGTGTCTGGTGCCCATGGTCAAAATATGGTGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTGCATGTATGTGTCTGGTGCCCATGGTCAAAATATGGTGTCAG  550

seq1  ATCCCCTGAAAATGAAGTTACTGGATGTAGTGAGCCACTGTGTCTGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTGAAAATGAAGTTACTGGATGTAGTGAGCCACTGTGTCTGGGAA  600

seq1  CCAAACCTAGGCCTTTCAGCAGAT-AAACAAATGCTTCTAACTATTGAGC  649
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCAAACCTAGGCCTTTCAGCAGATAAAACAAATGCTTCTAACTATTGAGC  650

seq1  CATCTTTCGTACCCTGACCAGTAATA-TTTTTAAAAATAACACATTAATA  698
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATCTTTCGTACCCTGACCAGTAATATTTTTTAAAAATAACACATTAATA  700

seq1  TGAGGTTAATTTAACATTCATAACTAAGTTCATGTGTCTGGGGGCATAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTAATTTAACATTCATAACTAAGTTCATGTGTCTGGGGGCATAGC  750

seq1  TCAGTGGTGGCTGCACACCCGGCTTGTGTAAAAATCT-GGATTGGATCTT  797
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  TCAGTGGTGGCTGCACACCCGGTTTGTGTAAAAATCTGGGATTGGATCTT  800

seq1  CAGTACTACTGAAAAATTTAATGTGAGACAAGCTTCCATGTAAAGAGACC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTACTGAAAAATTTAATGTGAGACAAGCTTCCATGTAAAGAGACC  850

seq1  AAGCAGGAAAAATATC-TAGTCTCCTTAGTAAACACGGGAAATATATTTG  896
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGCAGGAAAAATATCTTAGTCTCCTTAGTAAACACGGGAAATATATTTG  900

seq1  AGAAAACTCAACTCTCTCCCATGATAGAAAGACTTTGTATCACCTTTAAA  946
      || |||||| |||||||||||||||||||||||||||||||||| || ||
seq2  AG-AAACTC-ACTCTCTCCCATGATAGAAAGACTTTGTATCACCCTT-AA  947

seq1  ATAACAACATACTTGTTATTTAATAAGAGGCATATTAAAAAGTCAAAGGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATAACAACATACTTGTTATTTAATAAGAGGCATATTAAAAAGTCAAA-GT  996

seq1  TAAATCATACTTGTGAGTA  1015
      |||||||||||||||||||
seq2  TAAATCATACTTGTGAGTA  1015

seq1: chr11_114100294_114100989
seq2: B6Ng01-124E06.g_65_761 (reverse)

seq1  TCACTCCCTACGAC-ATACGTGCTCCCTATA-ACTGCTCTCCCTTGGGAA  48
      |||||||||||||| | |||||||||| ||| ||||||||||||||||||
seq2  TCACTCCCTACGACAAAACGTGCTCCC-ATATACTGCTCTCCCTTGGGAA  49

seq1  GTGTGAGA-CCAACCAGCAGGCATACATACGAGCAGATTCCATCTTGAAG  97
      ||| |||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGACCCAACCAGCAGGCATACATACGAGCAGATTCCATCTTGAAG  99

seq1  TATCCATTTCCCCCTCAGCACCACCTCCATCTCCTTGTGCTTCTAAAATA  147
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATCCATTTCCCCCTCAGCACCACCTCCATCTCCTTGTGCTTCT-AAATA  148

seq1  CCCAGTAATGAAACTGAGGAGGGGTGACTCAAGGGTAAGAAAGCCCGGAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAATGAAACTGAGGAGGGGTGACTCAAGGGTAAGAAAGCCCGGAG  198

seq1  GGGTAGTGGGATAATGGGACACTTACGGGAGAAGTAAGGATACTTGCCCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGTGGGATAATGGGACACTTACGGGAGAAGTAAGGATACTTGCCCC  248

seq1  CTGCCCCCTGCCCCCCTCCTCCATCAGCCCCCTGGAACCTCAGTGGGCAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCCTGCCCCCCTCCTCCATCAGCCCCCTGGAACCTCAGTGGGCAG  298

seq1  AAATATCCCTTCTCATTTCCCAGCCCTATTCCCCAGCTGCCTGGCCTGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCCCTTCTCATTTCCCAGCCCTATTCCCCAGCTGCCTGGCCTGGA  348

seq1  TTGCTGGAGCCTCTGCAACCATTGTGTGCTGAGCCATTCAGTGGGGGCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGAGCCTCTGCAACCATTGTGTGCTGAGCCATTCAGTGGGGGCAG  398

seq1  CTCCCTAGTGGGCATCCACAGCCCCGCTGCCTGACAGGCCATGTGCAAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAGTGGGCATCCACAGCCCCGCTGCCTGACAGGCCATGTGCAAGG  448

seq1  GGACAGGCCTGAATGACTGTAATATGAACCATGAAAGTGGATATTAAAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGCCTGAATGACTGTAATATGAACCATGAAAGTGGATATTAAAGG  498

seq1  CTTTATTACAGGGTGAGGACTGCTAATTGCCACGTTCCTTTCAGGAAGCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTACAGGGTGAGGACTGCTAATTGCCACGTTCCTTTCAGGAAGCC  548

seq1  AGAGCTGATGAGCTTAAGCAGAGGCACCCAATTATTATAACTCTGTCAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGATGAGCTTAAGCAGAGGCACCCAATTATTATAACTCTGTCAGC  598

seq1  CCAGAGCTGGGGAGGGAGAACAAGGGAGGGAGGGGGCAGGCTGCAGGCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTGGGGAGGGAGAACAAGGGAGGGAGGGGGCAGGCTGCAGGCAC  648

seq1  GATTACCTGAACTTTATCCAAGGCACACGCTGCTGCCGGCCTGGAATTC  696
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACCTGAACTTTATCCAAGGCACACGCTGCTGCCGGCCTGGAATTC  697