BAC Information

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BAC

Clone NameB6Ng01-124F12
Chromosome11 (Build37)
Map Location 48,895,997 - 48,897,069
singlet/doubletsinglet
Overlap geneOlfr56, LOC100039796
Upstream geneLOC192895, Hn1l-ps2, LOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik
Downstream geneIfi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124F12.bB6Ng01-124F12.g
ACCDH927276DH927277
length1,0661,244
definitionDH927276|Mus musculus domesticus DNA, BAC clone: B6Ng01-124F12, 5' end.DH927277|Mus musculus domesticus DNA, BAC clone: B6Ng01-124F12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcttcatgtccttgttctcaagtgtcttcacttataaaagttcc
tataactcttcctagaaaaatcccttgtgggaagaacattttctactctg
ccccacccatagttcacaataagttcacagcttccttacataggttccca
cacaatattcttcttgtaggtttagcaaataagtgtgttgcctagttacg
tagcaacactgtggggctgtgggggtggctccatggtaaagaacttattt
tgaaagacagaaacagaaatggctggaaacctcttgagtctgcacctcac
tctcttgccccatcttacatccatacatagtcacatggaactcaaccact
gcctgcctcatttgactctggtttatgtctattcttgaatgaccatgcag
aacactgagctcagatgaatgaactatgggccacatctgcattttctgga
cctcctgacttctgattatgtccccaaggacgatggggagtatagacttt
caaactctgcttctggggctgtaagtaagttatgagtgattaaacatgtt
ctaccttctgaattaatatatttaaagaactcaaatgtggaaagattagt
gaaagtcctgtaatgtttagtacgatgaacttctagcaatttatgttagg
atacaaagatttatgcagtggccccccagcactgggttcttaaatctaat
gagataatatggaaaaatgaagaaaccaaaaaccgtttccaaggtaccac
caaataatggggcaggaacaagcaaacaacagtgggaggaatctgagtta
tgagtcgggacttaatagagctttaggactttgcctcactatgaatattt
tgttgtggctctcacatccctgagaggtgttggtgatgctaagtacccag
aacagcagtacacaatggcaagcatgacaaaccaaacctcaaccatgttc
aaaacagactcatacctaaaaaggaaaagaagagaaaccttgactgaagg
agcaactataaaatttccttttttttttttgtattatgaaggaaagaagg
tgatagatttaagctc
gaattcttctggtttccatctgtgcctggagctgatcctgtgccacagat
ctccatacccaattcctgcttggagagagtttgtctcccaggagttctga
cacatatgcttacaggaggtacagagccagcaagaccagtcaaaacctga
gaaaaccagatggtgaaaggcaatggcaagaacataagctacagaaacca
agtctacttggcatcatcagaactcagttctctcatcacagcaagccttg
tatattccaacaaaccagagaagtaagactctgatttaaaatcagaattc
atgatgatgatagaagactttaagaaggacatatataactcccttaaaga
aatacaggagaacacaggcaaacaggtagaagacctcaaagaggagacac
aaaaatcccttaaagaattacaggaaaacataaccaataggtgcaagaat
tgaacaaaaccatctagggtctaaaaatggaatagaaacaataaatgact
cagaaagggagacaatcctggacttagaaaacctaggaaatagttcagga
gtcgtagatgcaagcattagcaacagtatacaagagacagaagagagaat
ctcaggtgcagtagataacatagaacacattgacacaacaattgtcaaag
aaaatgcaaaatgcaaaaagctcctaactcaaaatatccaggaaatcctg
gatacaatgagaagatcaaacataaggataatgggtagagatgtgagtag
agattcccaacttaaagggacagtaaaatatctccaacaaaattatagga
aatttccctaacctaaagaaagagatgcccacgaacatacaaagaagcct
gcagaactccaactttggacccggaaaaaaatttttcccatcacataata
gtcaaaacacaattatgcacaaaacaaagaaagaatattaaaagcagtag
gtgaggaaggtcaagtacatatgaatgcagacctatcatattacaccaga
ctctcacagagactatgaaagctagaaggtgtttttagaacatttgtcct
aaacaaaatttagcaagctcgaagctagaagatttcctgcagaccctatg
gagagcacaatgccagccggtttctaagcccggctaattctattatcgaa
ttagaacccaggttattcaggaataacccattgcatatgttcattcagcc
agacaatcagcactccaaggaaatatgataaaatagacatcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_48895997_48897069
seq2: B6Ng01-124F12.b_44_1109 (reverse)

seq1  GAGCTTAAAGTCATCACCTTCTCTCCTTCATTAATTACAAAAAAAAAAAA  50
      |||||||||   |||||||||| ||||||||  | |||||||||||||||
seq2  GAGCTTAAATCTATCACCTTCTTTCCTTCAT--AATACAAAAAAAAAAAA  48

seq1  AGAATATTTTTATAGTTGCTTCCTTCAGTCAGGGTTTCTTCTTCTTTTTC  100
       ||  | |||||||||||| ||||||||||| |||||| ||||| |||||
seq2  GGA--AATTTTATAGTTGC-TCCTTCAGTCAAGGTTTC-TCTTC-TTTTC  93

seq1  TTTTTTAGGTATGAGTCTGTTTTGAACATGGTTGAGGTTTGGTTTGTCAT  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGGTATGAGTCTGTTTTGAACATGGTTGAGGTTTGGTTTGTCAT  143

seq1  GCTTGCC-TTGTGTACTGCTGTTCTGGGTACTTAGCATCACCAACACCTC  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCATTGTGTACTGCTGTTCTGGGTACTTAGCATCACCAACACCTC  193

seq1  TCAGGGATGTGAGAGCCACAACAAAATATTCATAGTGAGGCAAAGTCCTT  249
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCAGGGATGTGAGAGCCACAACAAAATATTCATAGTGAGGCAAAGTCC-T  242

seq1  AAAGCTCTATTAAGTCCCGACTCATAACTCAGATTCCTCCCACTGTTGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTATTAAGTCCCGACTCATAACTCAGATTCCTCCCACTGTTGTT  292

seq1  TGCTTGTTCCTGCCCCATTATTTGGTGGTACCTTGGAAACGGTTTTTGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTCCTGCCCCATTATTTGGTGGTACCTTGGAAACGGTTTTTGGT  342

seq1  TTCTTCATTTTTCCATATTATCTCATTAGATTTAAGAACCCAGTGCTGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTTTTCCATATTATCTCATTAGATTTAAGAACCCAGTGCTGGG  392

seq1  GGGCCACTGCATAAATCTTTGTATCCTAACATAAATTGCTAGAAGTTCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCACTGCATAAATCTTTGTATCCTAACATAAATTGCTAGAAGTTCAT  442

seq1  CGTACTAAACATTACAGGACTTTCACTAATCTTTCCACATTTGAGTTCTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACTAAACATTACAGGACTTTCACTAATCTTTCCACATTTGAGTTCTT  492

seq1  TAAATATATTAATTCAGAAGGTAGAACATGTTTAATCACTCATAACTTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATTAATTCAGAAGGTAGAACATGTTTAATCACTCATAACTTAC  542

seq1  TTACAGCCCCAGAAGCAGAGTTTGAAAGTCTATACTCCCCATCGTCCTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCCCCAGAAGCAGAGTTTGAAAGTCTATACTCCCCATCGTCCTTG  592

seq1  GGGACATAATCAGAAGTCAGGAGGTCCAGAAAATGCAGATGTGGCCCATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATAATCAGAAGTCAGGAGGTCCAGAAAATGCAGATGTGGCCCATA  642

seq1  GTTCATTCATCTGAGCTCAGTGTTCTGCATGGTCATTCAAGAATAGACAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTCATCTGAGCTCAGTGTTCTGCATGGTCATTCAAGAATAGACAT  692

seq1  AAACCAGAGTCAAATGAGGCAGGCAGTGGTTGAGTTCCATGTGACTATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGAGTCAAATGAGGCAGGCAGTGGTTGAGTTCCATGTGACTATGT  742

seq1  ATGGATGTAAGATGGGGCAAGAGAGTGAGGTGCAGACTCAAGAGGTTTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGTAAGATGGGGCAAGAGAGTGAGGTGCAGACTCAAGAGGTTTCC  792

seq1  AGCCATTTCTGTTTCTGTCTTTCAAAATAAGTTCTTTACCATGGAGCCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTTCTGTTTCTGTCTTTCAAAATAAGTTCTTTACCATGGAGCCAC  842

seq1  CCCCACAGCCCCACAGTGTTGCTACGTAACTAGGCAACACACTTATTTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAGCCCCACAGTGTTGCTACGTAACTAGGCAACACACTTATTTGC  892

seq1  TAAACCTACAAGAAGAATATTGTGTGGGAACCTATGTAAGGAAGCTGTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTACAAGAAGAATATTGTGTGGGAACCTATGTAAGGAAGCTGTGA  942

seq1  ACTTATTGTGAACTATGGGTGGGGCAGAGTAGAAAATGTTCTTCCCACAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTGTGAACTATGGGTGGGGCAGAGTAGAAAATGTTCTTCCCACAA  992

seq1  GGGATTTTTCTAGGAAGAGTTATAGGAACTTTTATAAGTGAAGACACTTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTTTCTAGGAAGAGTTATAGGAACTTTTATAAGTGAAGACACTTG  1042

seq1  AGAACAAGGACATGAAGAGAATTC  1073
      ||||||||||||||||||||||||
seq2  AGAACAAGGACATGAAGAGAATTC  1066