BAC Information

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BAC

Clone NameB6Ng01-124I15
Chromosome11 (Build37)
Map Location 102,715,330 - 102,828,447
singlet/doubletdoublet
Overlap geneEftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1
Upstream geneMeox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf, Slc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b
Downstream geneDcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124I15.bB6Ng01-124I15.g
ACCDH927420DH927421
length996436
definitionDH927420|Mus musculus domesticus DNA, BAC clone: B6Ng01-124I15, 5' end.DH927421|Mus musculus domesticus DNA, BAC clone: B6Ng01-124I15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,827,442 - 102,828,447)(102,715,330 - 102,715,771)
sequence
gaattcccctcccgagaccagtgcaaacatctaatggtataaagcaaggc
aagcatttggctcatagtccgtacttaaaaatcctactgacagccattgc
tggtgaaattttctttcccaggagtggtgctgtcttagacactcctcctt
tggactctactcctccctcttcaggtgactactatgccacagctggctaa
ttcaatatgcccagctcccacatggccttccatcccttttctgcaagtgt
ccccttcccatgtccccctgcccgctgagtctacacaagcccctctctat
acactttaccaccactcagagggctcccctgacccaacccccctctacag
caattatgtagagcaaacaagagcagctgatgagaaaggagctgctatta
gcttaacctttcgggactggagctgctgggaagagctgggaggtgcacag
ggagggggctccagtacaggtgggctgggggtgggggaggcaagcaaagc
aggtggaagaaacaggctccaggggactaacgggcaggatgcagcccaga
gaaaacagtaaggggacagagggacagaaagaggtggaataaggagactg
gaagctagtatagaagatgtgggtagcaaacagaaggttggagaagaccc
acagaataaccatatatcccagcacatagtacctagcacataggcttctt
gcacatagtaggatagcatgccagaaagacagacactttctactctgacc
actacgctgaattactgagtaaggattatcagagacaccacctggccctg
ctctcccattctatttttctttatttttatggtttcttgagacaggtttc
tctgtgtagccttgactgtcctagaactcactctgagacaggctggcctt
gaactcacagatatccaattgcttctgctccctagttctgggataaaggc
tggggaaagcactgtcagcacttctcctttttaatggagaactgag
tgagcctcactgtcccaggcagattacaaatgtgtggctgtagccacaca
taattgtgaggtactgcaaagtgacctcaggttccttacaagagcaacaa
gtgaacttaaccactaagttgtctcttcagccctccaaaaggttttgcaa
tttttgagactctacaagtcctggctgtcctagaacttcctacgtaaatt
gggctggccttgaatttagatctgcttgcctctgccttcccaggactggg
attaagggtgtgtgactcctgggtcaaaaggctttttttttttttttttt
ccattttttattaggtatttagctcatttacatttccaatgctataccaa
aagtcccccatacccacccacccccactctcttacccacccataaaaggc
ttttaataaataattgatgatgggggtggggagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102827442_102828447
seq2: B6Ng01-124I15.b_45_1040 (reverse)

seq1  CTCAGTTTCTCCATTTATAAAATGGGAGAGTGCTGGGCAGTGCTGTCCCA  50
      ||||| ||||||||   ||||| ||   |||||| | ||||||| |||| 
seq2  CTCAG-TTCTCCAT---TAAAAAGGAGAAGTGCT-GACAGTGCTTTCCCC  45

seq1  AGCCTTTAATCCCAGAACTAGGGAGGCAGAAGCAATTGGATCTCTGTGAG  100
      ||||||| |||||||||||||||| |||||||||||||||| ||||||||
seq2  AGCCTTT-ATCCCAGAACTAGGGA-GCAGAAGCAATTGGATATCTGTGAG  93

seq1  TTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGTCAAGGCTAC  150
      |||||||||||||| |||| ||||||||||||||||||||||||||||||
seq2  TTCAAGGCCAGCCT-GTCT-CAGAGTGAGTTCTAGGACAGTCAAGGCTAC  141

seq1  ACAGAGAAACCCTGTCTCAAGAAACCATAAAAAATAAAGAAAAATAGAAT  200
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  ACAGAGAAA-CCTGTCTCAAGAAACCAT-AAAAATAAAGAAAAATAGAAT  189

seq1  GGGAGAGCAGGGCCAGGTGGTGTCTCTGATAATCCTTACTCAGTAATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGCAGGGCCAGGTGGTGTCTCTGATAATCCTTACTCAGTAATTCA  239

seq1  GCGTAGTGGTCAGAGTAG-AAGTGTCTGTCTTTCTGGCATGCTATCCTAC  299
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCGTAGTGGTCAGAGTAGAAAGTGTCTGTCTTTCTGGCATGCTATCCTAC  289

seq1  TATGTGCAAGAAGCCTATGTGCTAGGTACTATGTGCTGGGATATATGGTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCAAGAAGCCTATGTGCTAGGTACTATGTGCTGGGATATATGGTT  339

seq1  ATTCTGTGGGTCTTCTCCAACCTTCTGTTTGCTACCCACATCTTCTATAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGGGTCTTCTCCAACCTTCTGTTTGCTACCCACATCTTCTATAC  389

seq1  TAGCTTCCAGTCTCCTTATTCCACCTCTTTCTGTCCCTCTGTCCCCTTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCCAGTCTCCTTATTCCACCTCTTTCTGTCCCTCTGTCCCCTTAC  439

seq1  TGTTTTCTCTGGGCTGCATCCTGCCCGTTAGTCCCCTGGAGCCTGTTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTCTGGGCTGCATCCTGCCCGTTAGTCCCCTGGAGCCTGTTTCT  489

seq1  TCCACCTGCTTTGCTTGCCTCCCCCACCCCCAGCCCACCTGTACTGGAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGCTTTGCTTGCCTCCCCCACCCCCAGCCCACCTGTACTGGAGC  539

seq1  CCCCTCCCTGTGCACCTCCCAGCTCTTCCCAGCAGCTCCAGTCCCGAAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCTGTGCACCTCCCAGCTCTTCCCAGCAGCTCCAGTCCCGAAAG  589

seq1  GTTAAGCTAATAGCAGCTCCTTTCTCATCAGCTGCTCTTGTTTGCTCTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGCTAATAGCAGCTCCTTTCTCATCAGCTGCTCTTGTTTGCTCTAC  639

seq1  ATAATTGCTGTAGAGGGGGGTTGGGTCAGGGGAGCCCTCTGAGTGGTGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGCTGTAGAGGGGGGTTGGGTCAGGGGAGCCCTCTGAGTGGTGGT  689

seq1  AAAGTGTATAGAGAGGGGCTTGTGTAGACTCAGCGGGCAGGGGGACATGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTATAGAGAGGGGCTTGTGTAGACTCAGCGGGCAGGGGGACATGG  739

seq1  GAAGGGGACACTTGCAGAAAAGGGATGGAAGGCCATGTGGGAGCTGGGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGACACTTGCAGAAAAGGGATGGAAGGCCATGTGGGAGCTGGGCA  789

seq1  TATTGAATTAGCCAGCTGTGGCATAGTAGTCACCTGAAGAGGGAGGAGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATTAGCCAGCTGTGGCATAGTAGTCACCTGAAGAGGGAGGAGTA  839

seq1  GAGTCCAAAGGAGGAGTGTCTAAGACAGCACCACTCCTGGGAAAGAAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAAAGGAGGAGTGTCTAAGACAGCACCACTCCTGGGAAAGAAAAT  889

seq1  TTCACCAGCAATGGCTGTCAGTAGGATTTTTAAGTACGGACTATGAGCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCAGCAATGGCTGTCAGTAGGATTTTTAAGTACGGACTATGAGCCA  939

seq1  AATGCTTGCCTTGCTTTATACCATTAGATGTTTGCACTGGTCTCGGGAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGCCTTGCTTTATACCATTAGATGTTTGCACTGGTCTCGGGAGG  989

seq1  GGAATTC  1006
      |||||||
seq2  GGAATTC  996

seq1: chr11_102715330_102715771
seq2: B6Ng01-124I15.g_69_510

seq1  GAATTCTGAGCCTCACTGTCCCAGGCAGATTACAAATGTGTGGCTGTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCCTCACTGTCCCAGGCAGATTACAAATGTGTGGCTGTAGC  50

seq1  CACACATAATTGTGAGGTACTGCAAAGTGACCTCAGGTTCCTTACAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATAATTGTGAGGTACTGCAAAGTGACCTCAGGTTCCTTACAAGAG  100

seq1  CAACAAGTGAACTTAACCACTAAGTTGTCTCTTCAGCCCTCCAAAAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGTGAACTTAACCACTAAGTTGTCTCTTCAGCCCTCCAAAAGGTT  150

seq1  TTGCAATTTTTGAGACTCTACAAGTCCTGGCTGTCCTAGAACTTCCTACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATTTTTGAGACTCTACAAGTCCTGGCTGTCCTAGAACTTCCTACG  200

seq1  TAAATTGGGCTGGCCTTGAATTTAGATCTGCTTGCCTCTGCCTTCCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGGGCTGGCCTTGAATTTAGATCTGCTTGCCTCTGCCTTCCCAGG  250

seq1  ACTGGGATTAAGGGTGTGTGACTCCTGGGTCAAAAGGCTTTTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGATTAAGGGTGTGTGACTCCTGGGTCAAAAGGCTTTTTTTTTTTT  300

seq1  TTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTA  350

seq1  TACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCCACCCATA  400
      ||||||||||||||||||||||||||||||||||| | ||||||||||||
seq2  TACCAAAAGTCCCCCATACCCACCCACCCCCACTCTCTTACCCACCCATA  400

seq1  AAAGGCTTTTAATAAATAATTGATGATGGGGGTGGGGAGATG  442
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTTTTAATAAATAATTGATGATGGGGGTGGGGAGATG  442