BAC Information

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BAC

Clone NameB6Ng01-125A12
Chromosome11 (Build37)
Map Location 105,669,415 - 105,809,069
singlet/doubletdoublet
Overlap geneTanc2, Cyb561
Upstream geneLOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, LOC667737
Downstream geneAce, EG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125A12.bB6Ng01-125A12.g
ACCDH927783DH927784
length1,137379
definitionDH927783|Mus musculus domesticus DNA, BAC clone: B6Ng01-125A12, 5' end.DH927784|Mus musculus domesticus DNA, BAC clone: B6Ng01-125A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,669,415 - 105,670,574)(105,808,685 - 105,809,069)
sequence
gaattctaggctgttttctctaccccttttttgcttcttcttcttttttt
tcatttataataaggcgatatataatactggtagcaaaagtggcttgtaa
agctttctaggcaaccaaccatgttctctgtcttagttggatttccattg
caccatgaccaaaggcagcttgaggaggagaggtttgacttcatcttaca
actctcaggtcacacacttcattactaagcaaagtcagagcaggaaccat
ggaagaaagctgcttgctttgttcatcatggcttgctcagtttattttct
tatgcaccacccaaggccacctgctcaggggtcacacacacacacacaca
cacacacaatgggttgggtcctcccatatcaattattaatcaagaaaata
ctcgaaggtttgactctaggcaatctaatgagggaattttctcagttgag
gtttctcttcccaaagtaatctagcttctgtcaagctgacaagaaactaa
ctatatcaatcagcttctgtaaatctcacatgtaatagaatttctcacat
gatagagactttcagtttagactctatctgcatataatgtctggctgtgg
gtctctgcatctgttcctatttgctgctggaggaagcctctttgatgata
actggataatgtattgatgtataagtatagcagaataccattagggatca
ttttattgatttcaggtattttagatcaggagagtttgtttttatcctgg
gtctctaagttatctagtctctgattcttgtttatccaaacaatgttgga
tatgagttccatatcatagagtgggtcttaggtcaaatcaaacattggtt
gtctactcctatcattctgtcccacatattttataggcagaacatatttt
agtcaaatgttttgtgccgggtggtgtccatgcttctcttttggtagtat
ggaaaatacctccatataccaaaagactagaattgtaagggtgagggttc
atgtaggcacaggtttgactttttcatgagtgtatggtgttgcctggaac
acctgctggcagtttctgatagacctttgtctatgattagcctgggtgtg
ggaattcatggatcccccccctaaaaaagaatttctc
ccttccccaggctcctcacagccacagtcctacagtctcctcagacagcc
ttccttagcgctggccttgggacagccacctctgctctctggctcctgct
ttataaccttctcgtgcttgctgtgttgatgcgtgacacctacgattcat
ccgattaggttggtgtgtagacgtccatctgcccacgcatgaatgtgtgt
atatatggcatttgaagtttccgttctgatctttgttctgtcccacatca
ctggagttacatggaagcagggccctgtcttactgtcttcttttcagggc
ctagaacaaagcctggcacacagcaggtgcccagtgaacccattcctgaa
gggaggaagaagggaggagagggggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_105669415_105670574
seq2: B6Ng01-125A12.b_49_1185

seq1  GAATTCTAGGCTGTTTTCTCTACCCCTTTTTTGCTTCTTCTTCTTTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCTGTTTTCTCTACCCCTTTTTTGCTTCTTCTTCTTTTTTT  50

seq1  TCATTTATAATAAGGCGATATATAATACTGGTAGCAAAAGTGGCTTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATAATAAGGCGATATATAATACTGGTAGCAAAAGTGGCTTGTAA  100

seq1  AGCTTTCTAGGCAACCAACCATGTTCTCTGTCTTAGTTGGATTTCCATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTAGGCAACCAACCATGTTCTCTGTCTTAGTTGGATTTCCATTG  150

seq1  CACCATGACCAAAGGCAGCTTGAGGAGGAGAGGTTTGACTTCATCTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGACCAAAGGCAGCTTGAGGAGGAGAGGTTTGACTTCATCTTACA  200

seq1  ACTCTCAGGTCACACACTTCATTACTAAGCAAAGTCAGAGCAGGAACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGGTCACACACTTCATTACTAAGCAAAGTCAGAGCAGGAACCAT  250

seq1  GGAAGAAAGCTGCTTGCTTTGTTCATCATGGCTTGCTCAGTTTATTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGCTGCTTGCTTTGTTCATCATGGCTTGCTCAGTTTATTTTCT  300

seq1  TATGCACCACCCAAGGCCACCTGCTCAGGGGTCACACACACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACCACCCAAGGCCACCTGCTCAGGGGTCACACACACACACACACA  350

seq1  CACACACAATGGGTTGGGTCCTCCCATATCAATTATTAATCAAGAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAATGGGTTGGGTCCTCCCATATCAATTATTAATCAAGAAAATA  400

seq1  CTCGAAGGTTTGACTCTAGGCAATCTAATGAGGGAATTTTCTCAGTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAGGTTTGACTCTAGGCAATCTAATGAGGGAATTTTCTCAGTTGAG  450

seq1  GTTTCTCTTCCCAAAGTAATCTAGCTTCTGTCAAGCTGACAAGAAACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTTCCCAAAGTAATCTAGCTTCTGTCAAGCTGACAAGAAACTAA  500

seq1  CTATATCAATCAGCTTCTGTAAATCTCACATGTAATAGAATTTCTCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCAATCAGCTTCTGTAAATCTCACATGTAATAGAATTTCTCACAT  550

seq1  GATAGAGACTTTCAGTTTAGACTCTATCTGCATATAATGTCTGGCTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGACTTTCAGTTTAGACTCTATCTGCATATAATGTCTGGCTGTGG  600

seq1  GTCTCTGCATCTGTTCCTATTTGCTGCTGGAGGAAGCCTCTTTGATGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGCATCTGTTCCTATTTGCTGCTGGAGGAAGCCTCTTTGATGATA  650

seq1  ACTGGATAATGTATTGATGTATAAGTATAGCAGAATACCATTAGGGATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATAATGTATTGATGTATAAGTATAGCAGAATACCATTAGGGATCA  700

seq1  TTTTATTGATTTCAGGTATTTTAGATCAGGAGAGTTTGTTTTTATCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGATTTCAGGTATTTTAGATCAGGAGAGTTTGTTTTTATCCTGG  750

seq1  GTCTCTAAGTTATCTAGTCTCTGATTCTTGTTTATCCAAACAATGTTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAAGTTATCTAGTCTCTGATTCTTGTTTATCCAAACAATGTTGGA  800

seq1  TATGAGTTCCATATCATAGAGTGGGTCTTAGGTCAAATCAAACATTGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTTCCATATCATAGAGTGGGTCTTAGGTCAAATCAAACATTGGTT  850

seq1  GTCTACTCCTATCATTCTGTCCCACATATTTTATAGGCAGAACATATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTCCTATCATTCTGTCCCACATATTTTATAGGCAGAACATATTTT  900

seq1  AGGTCAAATGTTTTGTGCCCGGGTTGGTGTCCATGCTTCTCTTTTGGTAG  950
      | |||||||||||||||||  || ||||||||||||||||||||||||||
seq2  A-GTCAAATGTTTTGTGCC--GGGTGGTGTCCATGCTTCTCTTTTGGTAG  947

seq1  TATGAAAAATACCTCCATATACCAAAAAAGACTAGAA-TGTAGGGGTGAG  999
      |||| ||||||||||||||||||  |||||||||||| |||| |||||||
seq2  TATGGAAAATACCTCCATATACC--AAAAGACTAGAATTGTAAGGGTGAG  995

seq1  GGTTCATGTAGGCACCAGTTTGACTTTTTCATGAGTTGTATGGGTGTTGC  1049
      |||||||||||||||  |||||||||||||||||| ||||| ||||||| 
seq2  GGTTCATGTAGGCACAGGTTTGACTTTTTCATGAG-TGTAT-GGTGTTG-  1042

seq1  CCTGGAAACACCCTGCTGGCAGTTTTCTGATAGACCCTTTTGTCTTAGTG  1099
      ||||| |||| ||||||||||| |||||||||||||  |||||||   ||
seq2  CCTGG-AACA-CCTGCTGGCAG-TTTCTGATAGACC--TTTGTCT--ATG  1085

seq1  TATAGCCTGGGTTGTTTGGGAATTTTCATGGGATCCCCCCCCCTAAAAAA  1149
        ||||||||   || ||||||  ||||| ||||||||||||    ||||
seq2  ATTAGCCTGG---GTGTGGGAA--TTCAT-GGATCCCCCCCC---TAAAA  1126

seq1  AAGAATTTCTC  1160
      |||||||||||
seq2  AAGAATTTCTC  1137

seq1: chr11_105808685_105809069
seq2: B6Ng01-125A12.g_69_453 (reverse)

seq1  TCCTCCCCCTCTCCTCCCTTCTTCCTCCCTTCAGGAATGGGTTCACTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCCTCTCCTCCCTTCTTCCTCCCTTCAGGAATGGGTTCACTGGG  50

seq1  CACCTGCTGTGTGCCAGGCTTTGTTCTAGGCCCTGAAAAGAAGACAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCTGTGTGCCAGGCTTTGTTCTAGGCCCTGAAAAGAAGACAGTAA  100

seq1  GACAGGGCCCTGCTTCCATGTAACTCCAGTGATGTGGGACAGAACAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGCCCTGCTTCCATGTAACTCCAGTGATGTGGGACAGAACAAAGA  150

seq1  TCAGAACGGAAACTTCAAATGCCATATATACACACATTCATGCGTGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACGGAAACTTCAAATGCCATATATACACACATTCATGCGTGGGCA  200

seq1  GATGGACGTCTACACACCAACCTAATCGGATGAATCGTAGGTGTCACGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACGTCTACACACCAACCTAATCGGATGAATCGTAGGTGTCACGCA  250

seq1  TCAACACAGCAAGCACGAGAAGGTTATAAAGCAGGAGCCAGAGAGCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACAGCAAGCACGAGAAGGTTATAAAGCAGGAGCCAGAGAGCAGAG  300

seq1  GTGGCTGTCCCAAGGCCAGCGCTAAGGAAGGCTGTCTGAGGAGACTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTCCCAAGGCCAGCGCTAAGGAAGGCTGTCTGAGGAGACTGTAG  350

seq1  GACTGTGGCTGTGAGGAGCCTGGGGAAGGGAATTC  385
      |||||||||||||||||||||||||||||||||||
seq2  GACTGTGGCTGTGAGGAGCCTGGGGAAGGGAATTC  385