BAC Information

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BAC

Clone NameB6Ng01-125K16
Chromosome11 (Build37)
Map Location 104,070,155 - 104,197,255
singlet/doubletdoublet
Overlap geneMapt, 1700081L11Rik
Upstream gene4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik
Downstream geneCdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125K16.bB6Ng01-125K16.g
ACCDH928239DH928240
length1,0521,044
definitionDH928239|Mus musculus domesticus DNA, BAC clone: B6Ng01-125K16, 5' end.DH928240|Mus musculus domesticus DNA, BAC clone: B6Ng01-125K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,070,155 - 104,071,207)(104,196,215 - 104,197,255)
sequence
gaattctctttgcacaaagatacattatcctttcatgatctctttttctt
tcaatcagttttcctcactgtcttctttttctagtatttggctatagtcc
tgtgttcgttagggttttattgctgtaaagagacaccatgaccaacgtaa
aacaaaacaaaacaaaacaaaaaacattttaattggggctggcttccagc
ttttagaggttcagtccattatcatcatggtgggaggatgagctgagagt
tctacatcttgattcaaaggcagcataaggacactcccttccacacactg
ggcagagcttaagcacaggacctcaaaacccatccccacattgatgcact
tcctccaacaaggcttacctacttcaacaaagccacacctactccatcaa
ggccacacctactccaacaaagccacgcctactccaatgaggccacacct
acttcaatgaggctacacctcctaatagtttcatttctcatgggtcagac
aaccaccacatcttatcttgctcttcctttttattacttatttataattc
gtgtgtgtgtgtgtgtgtgtgtaagctaacagtctccattgtccgtcttc
cttagtcactctccatcttaatttttgtgacaagactcctccctgtccct
ggagctcttccctttggtcaggctggctggctggcaagccttggagaggt
tcctgtctctaccttccctgtgttgggatttcagctgcatagagcttagc
ttttttacatgggtgctgggatctgagctcaggcctctcctgctaaagca
cacattctaccatctccccagcaccttttgtctttggttaatcaatgaga
atcagccattctttaagaacccctctctctggagggctgtatttctggtg
ccctacccttggtggcccctcaacttgacacagctcctgtagcttgggct
tagttcttcatctggataaattccaacatgtcttcctgcctacttacccg
aagttgagcctctactgtgtgcaggtttcagatgaggggaaggagttggc
tt
gaattcactaggcagggctgatagttcctcgtggctcttacatattgtgt
tatggaccctaccctgtgtgggtaaaagtggaagcaagtaccgttgatgg
atcttaaaagagtgccattgctctcagttcgagttaactgctttggtgta
gatgcctttttaaaataactcctcttactacccccacccccaaaaagaag
cagaaaaagtgcttactcattggtgtatttcttggctcataggtcttaca
ggtcatcagacggccggaccacccctcagttgggcagtgccaacccctcc
accccacagcctgcgtcccctgatgtcagtagtagccactctctgtcaga
attctcccatggtcaatctcctaggagtcccattagcccagaactacact
cagcccctctcacccctgtggctcgggacagtctgcgacacctggccagt
gaagacacccgatgttccacaccagagctgggactagatgaacaggtgag
gagagggtatctcctttgagtggagggagggcaagatatgaggtagaaca
gggaggggggcagcatgtgccgaagataaagctcttctctctgttgtttt
gaaatgaagtgtggttggtcattgttcctagggaagcccaccttgggagc
agtcttcgataaacttctccccaagtttgaggtcagggccttggctctgg
aaactggtcatcaccagatcatcttgtctgtccacagtcagtccagccat
gggaacgacggaccttctctctggcctacagtccccaggcagaatgtgag
gagcagctggatgcacaggacacggcagcccgctgcactcgccgcacctt
caggcagcaaaactggccgggaggcagaggtggcacccacctcgcctctg
ttgtcccgctcaagagtcggcatctggcagcactagtcacagctcaacgc
ccagcctcacagatgagcggaaaatgagactatacagactcacctactat
tggcataaagctctcaaatcctctgcgtttgataatccaaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_104070155_104071207
seq2: B6Ng01-125K16.b_50_1101

seq1  GAATTCTCTTTGCACAAAGATACATTATCCTTTCATGATCTCTTTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGCACAAAGATACATTATCCTTTCATGATCTCTTTTTCTT  50

seq1  TCAATCAGTTTTCCTCACTGTCTTCTTTTTCTAGTATTTGGCTATAGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAGTTTTCCTCACTGTCTTCTTTTTCTAGTATTTGGCTATAGTCC  100

seq1  TGTGTTCGTTAGGGTTTTATTGCTGTAAAGAGACACCATGACCAACGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCGTTAGGGTTTTATTGCTGTAAAGAGACACCATGACCAACGTAA  150

seq1  AACAAAACAAAACAAAACAAAAAACATTTTAATTGGGGCTGGCTTCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAAACAAAACAAAAAACATTTTAATTGGGGCTGGCTTCCAGC  200

seq1  TTTTAGAGGTTCAGTCCATTATCATCATGGTGGGAGGATGAGCTGAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGGTTCAGTCCATTATCATCATGGTGGGAGGATGAGCTGAGAGT  250

seq1  TCTACATCTTGATTCAAAGGCAGCATAAGGACACTCCCTTCCACACACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATCTTGATTCAAAGGCAGCATAAGGACACTCCCTTCCACACACTG  300

seq1  GGCAGAGCTTAAGCACAGGACCTCAAAACCCATCCCCACATTGATGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGCTTAAGCACAGGACCTCAAAACCCATCCCCACATTGATGCACT  350

seq1  TCCTCCAACAAGGCTTACCTACTTCAACAAAGCCACACCTACTCCATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAACAAGGCTTACCTACTTCAACAAAGCCACACCTACTCCATCAA  400

seq1  GGCCACACCTACTCCAACAAAGCCACGCCTACTCCAATGAGGCCACACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACACCTACTCCAACAAAGCCACGCCTACTCCAATGAGGCCACACCT  450

seq1  ACTTCAATGAGGCTACACCTCCTAATAGTTTCATTTCTCATGGGTCAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATGAGGCTACACCTCCTAATAGTTTCATTTCTCATGGGTCAGAC  500

seq1  AACCACCACATCTTATCTTGCTCTTCCTTTTTATTACTTATTTATAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCACATCTTATCTTGCTCTTCCTTTTTATTACTTATTTATAATTC  550

seq1  GTGTGTGTGTGTGTGTGTGTGTAAGCTAACAGTCTCCATTGTCCGTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTAAGCTAACAGTCTCCATTGTCCGTCTTC  600

seq1  CTTAGTCACTCTCCATCTTAATTTTTGTGACAAGACTCCTCCCTGTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCACTCTCCATCTTAATTTTTGTGACAAGACTCCTCCCTGTCCCT  650

seq1  GGAGCTCTTCCCTTTGGTCAGGCTGGCTGGCTGGCAAGCCTTGGAGAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCTTCCCTTTGGTCAGGCTGGCTGGCTGGCAAGCCTTGGAGAGGT  700

seq1  TCCTGTCTCTACCTTCCCTGTGTTGGGATTTCAGCTGCATAGAGCTTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTCTACCTTCCCTGTGTTGGGATTTCAGCTGCATAGAGCTTAGC  750

seq1  TTTTTTACATGGGTGCTGGGATCTGAGCTCAGGCC-CTCCTGCTAAAGCA  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTTTTACATGGGTGCTGGGATCTGAGCTCAGGCCTCTCCTGCTAAAGCA  800

seq1  CACATTCTACCATCTCCCCAGCACCTTTTGTCTTTGGTTAATCAATGAG-  848
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CACATTCTACCATCTCCCCAGCACCTTTTGTCTTTGGTTAATCAATGAGA  850

seq1  ATCAGCCATTCTTTAAGAACCCCTCTCTCTGGAGGGCTGTATTTCTGGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCATTCTTTAAGAACCCCTCTCTCTGGAGGGCTGTATTTCTGGTG  900

seq1  CCCTACCCTT-GTGGCCCCTCAACTTGACCACAGCTCCTGTAGCTTGGGC  947
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  CCCTACCCTTGGTGGCCCCTCAACTTGA-CACAGCTCCTGTAGCTTGGGC  949

seq1  TTAGTTCTTCATTCTGGATAAA-TCCAACATGTCTTCCTGCCTACTTACC  996
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  TTAGTTCTTCA-TCTGGATAAATTCCAACATGTCTTCCTGCCTACTTACC  998

seq1  CGAAGTTGAGCCTCTACTGTGTGCAGGTTTGCCAGATGGAGGGGAAGGAG  1046
      ||||||||||||||||||||||||||||||  ||||| ||||||||||||
seq2  CGAAGTTGAGCCTCTACTGTGTGCAGGTTT--CAGAT-GAGGGGAAGGAG  1045

seq1  TTGGCTT  1053
      |||||||
seq2  TTGGCTT  1052

seq1: chr11_104196215_104197255
seq2: B6Ng01-125K16.g_67_1110 (reverse)

seq1  ATGTTT-GAATATCAAACGCAGAGATTTCTGA-AGCTTTAATGCCAATAG  48
      |||||| || ||||||||||||||  || ||| |||||| ||||||||||
seq2  ATGTTTGGATTATCAAACGCAGAGGATT-TGAGAGCTTT-ATGCCAATAG  48

seq1  TA-GTGAGTCTGTATAGTCTCATTTTCCGCTCATCTGTGA-GCTGGGCGC  96
      || ||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  TAGGTGAGTCTGTATAGTCTCATTTTCCGCTCATCTGTGAGGCTGGGCGT  98

seq1  TGAGCTGTGACTGTTGCTGCCAGATGCCGACTCTTGAGCGGGACAACAGG  146
      ||||||||||||  |||||||||||||||||||||||||||||||||| |
seq2  TGAGCTGTGACTAGTGCTGCCAGATGCCGACTCTTGAGCGGGACAACA-G  147

seq1  AGGCGAGGTGGGTGCCACCTCTGCCTCCCGGCCAGTCTTGCTGCCTG-AG  195
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  AGGCGAGGTGGGTGCCACCTCTGCCTCCCGGCCAGTTTTGCTGCCTGAAG  197

seq1  GTGCGGCGAGTGCAGCGGGCTGCCGTGTCCTGTGCATCCAGCTGCTCCTC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGGCGAGTGCAGCGGGCTGCCGTGTCCTGTGCATCCAGCTGCTCCTC  247

seq1  ACATTCTGCCTGGGGACTGTAGGCCAGAGGGAAGGTCCGTCGTTCCCATG  295
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACATTCTGCCTGGGGACTGTAGGCCAGAGAGAAGGTCCGTCGTTCCCATG  297

seq1  GCTGGACTGACTGTGGACAGACAAGATGATCTGGTGATGACCAGTTTCCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACTGACTGTGGACAGACAAGATGATCTGGTGATGACCAGTTTCCA  347

seq1  GAGCCAAGGCCCTGACCTCAAACTTGGGGAGAAGTTTATCG-AGACTGCT  394
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGCCAAGGCCCTGACCTCAAACTTGGGGAGAAGTTTATCGAAGACTGCT  397

seq1  CCCAAGGTGGGCTTCCCTAGGAACAATGACCAACCACACTTCATTTCAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGTGGGCTTCCCTAGGAACAATGACCAACCACACTTCATTTCAAA  447

seq1  ACAACAGAGAGAAGAGCTTTATCTTCGGCACATGCTGCCCCCCTCCCTGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGAGAGAAGAGCTTTATCTTCGGCACATGCTGCCCCCCTCCCTGT  497

seq1  TCTACCTCATATCTTGCCCTCCCTCCACTCAAAGGAGATACCCTCTCCTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTCATATCTTGCCCTCCCTCCACTCAAAGGAGATACCCTCTCCTC  547

seq1  ACCTGTTCATCTAGTCCCAGCTCTGGTGTGGAACATCGGGTGTCTTCACT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTTCATCTAGTCCCAGCTCTGGTGTGGAACATCGGGTGTCTTCACT  597

seq1  GGCCAGGTGTCGCAGACTGTCCCGAGCCACAGGGGTGAGAGGGGCTGAGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGTGTCGCAGACTGTCCCGAGCCACAGGGGTGAGAGGGGCTGAGT  647

seq1  GTAGTTCTGGGCTAATGGGACTCCTAGGAGATTGACCATGGGAGAATTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCTGGGCTAATGGGACTCCTAGGAGATTGACCATGGGAGAATTCT  697

seq1  GACAGAGAGTGGCTACTACTGACATCAGGGGACGCAGGCTGTGGGGTGGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAGTGGCTACTACTGACATCAGGGGACGCAGGCTGTGGGGTGGA  747

seq1  GGGGTTGGCACTGCCCAACTGAGGGGTGGTCCGGCCGTCTGATGACCTGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGGCACTGCCCAACTGAGGGGTGGTCCGGCCGTCTGATGACCTGT  797

seq1  AAGACCTATGAGCCAAGAAATACACCAATGAGTAAGCACTTTTTCTGCTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTATGAGCCAAGAAATACACCAATGAGTAAGCACTTTTTCTGCTT  847

seq1  CTTTTTGGGGGTGGGGGTAGTAAGAGGAGTTATTTTAAAAAGGCATCTAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGGGGGTGGGGGTAGTAAGAGGAGTTATTTTAAAAAGGCATCTAC  897

seq1  ACCAAAGCAGTTAACTCGAACTGAGAGCAATGGCACTCTTTTAAGATCCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGCAGTTAACTCGAACTGAGAGCAATGGCACTCTTTTAAGATCCA  947

seq1  TCAACGGTACTTGCTTCCACTTTTACCCACACAGGGTAGGGTCCATAACA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGGTACTTGCTTCCACTTTTACCCACACAGGGTAGGGTCCATAACA  997

seq1  CAATATGTAAGAGCCACGAGGAACTATCAGCCCTGCCTAGTGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGTAAGAGCCACGAGGAACTATCAGCCCTGCCTAGTGAATTC  1044