BAC Information

Click to search

BAC

Clone NameB6Ng01-125L03
Chromosome11 (Build37)
Map Location 6,412,198 - 6,580,867
singlet/doubletdoublet
Overlap geneMyo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3
Upstream geneXbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb
Downstream geneLOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125L03.bB6Ng01-125L03.g
ACCDH928258DH928259
length1,201949
definitionDH928258|Mus musculus domesticus DNA, BAC clone: B6Ng01-125L03, 5' end.DH928259|Mus musculus domesticus DNA, BAC clone: B6Ng01-125L03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,412,198 - 6,413,405)(6,579,919 - 6,580,867)
sequence
gaattcttaaagagtgtgccggctgtcaggggacgcttggtcacttccgt
gatgtcctgttgcccgtcaggccacatggctcgcaaggtgggatccacac
tgaagacatatgctacatttacccagataccatggcagggcaaagcccac
ctgacccaatatagctacatagttttagtcttgaacctcaggctgtctgt
gagttaagtagggattagaccccagagtccctgaagagtctaatcctggc
cctgcaagctgtgctcacctattgtacagcagccgtttgaagtcctggaa
gagagagtctctattcttgtcaatgaagccttccacagagtacctgacca
agaccagagttggagagtagattaagggtcaggctaccaagaagtccccc
accttctgccacctgtctctaattacctgactcagtttctcccagcctgc
taccctcttctgggtccctcacatctgcgttcaccttgtcacctacacct
gttctcctcaggataagtttccctctggggaacggactcaaaggttaagg
ctccaggcctaaagccaagcatcgcagcaccaaatcctacgtcttctacg
tgtgcactgagtggctttggaaaagctatccaatctctctgcttctccat
gtacattaaatacttgaacaaagtattcttgtactgagtttctacaaata
ccagcaattacagtaacagtgaagttcaactttgtggtataagagcccgt
gaataatgatctggctcttggactactagaaagtttattgataaatattg
gatctgcttgtagcaccagtgaagatcaaaggcgcggattactgtgaaca
agtgtgtgattgtctatttcccctccttgggaagctttgcatcaaacaca
atatttctctgagtttgcctcaaatttctctttagagaggaatgagagag
aataattatcggttcgttatcacaactccagaaagaaaatctaggctttg
atgctcagaggcagtgtgctgggtagttttgtcaacatgccacaagccaa
agttgtttgagaattgcagaacctcaattaagaaaatgaccccgtcgaat
tgtatgcaagtcgtgggacatttggctctcataatttaaaagattcattc
agggtatcaatattatgcagtttatggcatgtctggactcactgtgtcta
t
gaattctctcaggactaaactcccagaactaagagaaggtttgacttttt
tataacttttaggagtggcagaaagtttcccatcacatgatttagttcat
caccgcttctttggcaaggagcacggagaagaaccaggtatcataaatca
agagctgtcaaggcacagcacggagtcccagggggaggggcagggaggcg
tggcctgactcaagccgtgggatttggcctaaagatgcaggccgctgttc
taacagtctccacagtgctcatggctgtgtgccattgagaacataacagg
gcctcagtttcctctgcaaaagatcagggaagagcagccgcctcagaggg
tgcgggcctgtgggtcacaggatgtgctgatctcaaagctggctccggag
aggcagcagacactcaggaaggatctgctgtgtgtcggggctggatgtcc
actcttcttccttagcagcttctccattgttgtcaggaaatgtttcaatt
tctgactacagaaactgccaccatcctgttcccatgtctggcccctcccc
aacacacacacacacacacacacacacacacacacacacacacacacaca
gtgtggttttacgtgtggagatcagattctctccttccatcctgtgggtt
caagatagagctcggtggtggagctcggttgacgctcaacgaagtctccc
tgacctcatcggcactccctacagaaacgcgtttccctgaccaggtctcc
ttctctcccatttcgtcactgtatcgtaattgatttcctcctattctttt
gggagtttctgtactattttgttgttgttgttgttgtgttgctgctgctg
ctgctgctgttgctgctgttgagctgaatgctctcctttcattttgcttc
ctgattgcatctgagctcccacatcacatggagggggaggggggcgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_6412198_6413405
seq2: B6Ng01-125L03.b_50_1250

seq1  GAATTCTTAAAGAGTGTGCCGGCTGTCAGGGGACGCTTGGTCACTTCCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAGAGTGTGCCGGCTGTCAGGGGACGCTTGGTCACTTCCGT  50

seq1  GATGTCCTGTTGCCCGTCAGGCCACATGGCTCGCAAGGTGGGATCCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCTGTTGCCCGTCAGGCCACATGGCTCGCAAGGTGGGATCCACAC  100

seq1  TGAAGACATATGCTACATTTACCCAGATACCATGGCAGGGCAAAGCCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACATATGCTACATTTACCCAGATACCATGGCAGGGCAAAGCCCAC  150

seq1  CTGACCCAATATAGCTACATAGTTTTAGTCTTGAACCTCAGGCTGTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCAATATAGCTACATAGTTTTAGTCTTGAACCTCAGGCTGTCTGT  200

seq1  GAGTTAAGTAGGGATTAGACCCCAGAGTCCCTGAAGAGTCTAATCCTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAGTAGGGATTAGACCCCAGAGTCCCTGAAGAGTCTAATCCTGGC  250

seq1  CCTGCAAGCTGTGCTCACCTATTGTACAGCAGCCGTTTGAAGTCCTGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAGCTGTGCTCACCTATTGTACAGCAGCCGTTTGAAGTCCTGGAA  300

seq1  GAGAGAGTCTCTATTCTTGTCAATGAAGCCTTCCACAGAGTACCTGACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGTCTCTATTCTTGTCAATGAAGCCTTCCACAGAGTACCTGACCA  350

seq1  AGACCAGAGTTGGAGAGTAGATTAAGGGTCAGGCTACCAAGAAGTCCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGAGTTGGAGAGTAGATTAAGGGTCAGGCTACCAAGAAGTCCCCC  400

seq1  ACCTTCTGCCACCTGTCTCTAATTACCTGACTCAGTTTCTCCCAGCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTGCCACCTGTCTCTAATTACCTGACTCAGTTTCTCCCAGCCTGC  450

seq1  TACCCTCTTCTGGGTCCCTCACATCTGCGTTCACCTTGTCACCTACACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCTTCTGGGTCCCTCACATCTGCGTTCACCTTGTCACCTACACCT  500

seq1  GTTCTCCTCAGGATAAGTTTCCCTCTGGGGAACGGACTCAAAGGTTAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCTCAGGATAAGTTTCCCTCTGGGGAACGGACTCAAAGGTTAAGG  550

seq1  CTCCAGGCCTAAAGCCAAGCATCGCAGCACCAAATCCTACGTCTTCTACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGCCTAAAGCCAAGCATCGCAGCACCAAATCCTACGTCTTCTACG  600

seq1  TGTGCACTGAGTGGCTTTGGAAAAGCTATCCAATCTCTCTGCTTCTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACTGAGTGGCTTTGGAAAAGCTATCCAATCTCTCTGCTTCTCCAT  650

seq1  GTACATTAAATACTTGAACAAAGTATTCTTGTACTGAGTTTCTACAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTAAATACTTGAACAAAGTATTCTTGTACTGAGTTTCTACAAATA  700

seq1  CCAGCAATTACAGTAACAGTGAAGTTCAACTTTGTGGTATAAGAGCCCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAATTACAGTAACAGTGAAGTTCAACTTTGTGGTATAAGAGCCCGT  750

seq1  GAATAATGATCTGGCTCTTGGACTACTAGAAAGTTTATTGATAAATATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATGATCTGGCTCTTGGACTACTAGAAAGTTTATTGATAAATATTG  800

seq1  GATCTGCTTGTAGCACCAGTGAAGATCAAAGGCGCGGATTACTGTGAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCTTGTAGCACCAGTGAAGATCAAAGGCGCGGATTACTGTGAACA  850

seq1  AGTGTGTGATTGTCTATTTCCCCTCCTTGGGAAGC-TTGCATCAAACACA  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTGTGTGATTGTCTATTTCCCCTCCTTGGGAAGCTTTGCATCAAACACA  900

seq1  ATATTTCTCTGAG-TTGCCTCAAA-TTCTCTTTAGAGAGGAATGAGAGAG  947
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  ATATTTCTCTGAGTTTGCCTCAAATTTCTCTTTAGAGAGGAATGAGAGAG  950

seq1  ATAAATTATCGG-TCGTTATCACAACTCCAGAAAGAAAATCTAGGCTTTG  996
      |  ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATAATTATCGGTTCGTTATCACAACTCCAGAAAGAAAATCTAGGCTTTG  1000

seq1  ATGCTCAGAGGCAGTGTGCTGGGTAGTTTTTGTCAACATGCCACAAGCCA  1046
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGCTCAGAGGCAGTGTGCTGGGTAG-TTTTGTCAACATGCCACAAGCCA  1049

seq1  GAGTTGTCTGAGAATTGCAG-ACCTCAATTAAGAAAATGACCCCGTCAGA  1095
       |||||| |||||||||||| ||||||||||||||||||||||||||  |
seq2  AAGTTGTTTGAGAATTGCAGAACCTCAATTAAGAAAATGACCCCGTCGAA  1099

seq1  TTGTAGGCAAGTCGGTGGGACATTTTGGGTTTTTTAATAATTTTTAAAAG  1145
      ||||| ||||||| ||||||||||| |     | | ||||  ||||||||
seq2  TTGTATGCAAGTC-GTGGGACATTTGG----CTCTCATAA--TTTAAAAG  1142

seq1  ATTCATTCA-TGTATCATTATTTTATGTATGTTTATGGGTATGTCTGTGC  1194
      |||||||||  ||||||  || ||||| | |||||| || ||||||| | 
seq2  ATTCATTCAGGGTATCA--ATATTATGCA-GTTTAT-GGCATGTCTG-GA  1187

seq1  ATCACTGTGTCTAT  1208
       |||||||||||||
seq2  CTCACTGTGTCTAT  1201

seq1: chr11_6579919_6580867
seq2: B6Ng01-125L03.g_68_1016 (reverse)

seq1  CCCCG-CCCCCTCCCCCTCCATGTGATGTGGGAGCCTCAGATGCAATCAG  49
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  CCCCGCCCCCCTCCCCCTCCATGTGATGTGGGAG-CTCAGATGCAATCAG  49

seq1  GAAGCAAAATGAAA-GAGAGCATTCAGCTCAACAGCAGCAACAGCAGCAG  98
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAAGCAAAATGAAAGGAGAGCATTCAGCTCAACAGCAGCAACAGCAGCAG  99

seq1  CAGCAGCAGCAACAACAACAACAACAACAACAAAATAGTACAGAAACTCC  148
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCAGCAAC-ACAACAACAACAACAACAAAATAGTACAGAAACTCC  148

seq1  CAAAAGAATAGGAGGAAATCAATTACGATACAGTGACGAAATGGGAGAGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAATAGGAGGAAATCAATTACGATACAGTGACGAAATGGGAGAGA  198

seq1  AGGAGACCTGGTCAGGGAAACGCGTTTCTGTAGGGAGTGCCGATGAGGTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACCTGGTCAGGGAAACGCGTTTCTGTAGGGAGTGCCGATGAGGTC  248

seq1  AGGGAGACTTCGTTGAGCGTCAACCGAGCTCCACCACCGAGCTCTATCTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACTTCGTTGAGCGTCAACCGAGCTCCACCACCGAGCTCTATCTT  298

seq1  GAACCCACAGGATGGAAGGAGAGAATCTGATCTCCACACGTAAAACCACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCACAGGATGGAAGGAGAGAATCTGATCTCCACACGTAAAACCACA  348

seq1  CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  398

seq1  TGGGGAGGGGCCAGACATGGGAACAGGATGGTGGCAGTTTCTGTAGTCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGGGCCAGACATGGGAACAGGATGGTGGCAGTTTCTGTAGTCAG  448

seq1  AAATTGAAACATTTCCTGACAACAATGGAGAAGCTGCTAAGGAAGAAGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAAACATTTCCTGACAACAATGGAGAAGCTGCTAAGGAAGAAGAG  498

seq1  TGGACATCCAGCCCCGACACACAGCAGATCCTTCCTGAGTGTCTGCTGCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATCCAGCCCCGACACACAGCAGATCCTTCCTGAGTGTCTGCTGCC  548

seq1  TCTCCGGAGCCAGCTTTGAGATCAGCACATCCTGTGACCCACAGGCCCGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGGAGCCAGCTTTGAGATCAGCACATCCTGTGACCCACAGGCCCGC  598

seq1  ACCCTCTGAGGCGGCTGCTCTTCCCTGATCTTTTGCAGAGGAAACTGAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTGAGGCGGCTGCTCTTCCCTGATCTTTTGCAGAGGAAACTGAGG  648

seq1  CCCTGTTATGTTCTCAATGGCACACAGCCATGAGCACTGTGGAGACTGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTATGTTCTCAATGGCACACAGCCATGAGCACTGTGGAGACTGTT  698

seq1  AGAACAGCGGCCTGCATCTTTAGGCCAAATCCCACGGCTTGAGTCAGGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCGGCCTGCATCTTTAGGCCAAATCCCACGGCTTGAGTCAGGCC  748

seq1  ACGCCTCCCTGCCCCTCCCCCTGGGACTCCGTGCTGTGCCTTGACAGCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTCCCTGCCCCTCCCCCTGGGACTCCGTGCTGTGCCTTGACAGCTC  798

seq1  TTGATTTATGATACCTGGTTCTTCTCCGTGCTCCTTGCCAAAGAAGCGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTATGATACCTGGTTCTTCTCCGTGCTCCTTGCCAAAGAAGCGGT  848

seq1  GATGAACTAAATCATGTGATGGGAAACTTTCTGCCACTCCTAAAAGTTAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACTAAATCATGTGATGGGAAACTTTCTGCCACTCCTAAAAGTTAT  898

seq1  AAAAAAGTCAAACCTTCTCTTAGTTCTGGGAGTTTAGTCCTGAGAGAATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTCAAACCTTCTCTTAGTTCTGGGAGTTTAGTCCTGAGAGAATT  948

seq1  C  949
      |
seq2  C  949