BAC Information

Click to search

BAC

Clone NameB6Ng01-126H09
Chromosome11 (Build37)
Map Location 5,594,911 - 5,746,161
singlet/doubletdoublet
Overlap geneMrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm
Upstream gene1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181
Downstream geneAebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126H09.bB6Ng01-126H09.g
ACCDH928826DH928827
length571846
definitionDH928826|Mus musculus domesticus DNA, BAC clone: B6Ng01-126H09, 5' end.DH928827|Mus musculus domesticus DNA, BAC clone: B6Ng01-126H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,745,591 - 5,746,161)(5,594,911 - 5,595,586)
sequence
gaattcctgggccaccttcactgtcattgactaatctgctggtccaatgt
gcattctccttgtctatcttgcaccatgtgggcagtgatttctgtatgcc
atatacactatactccatgtgctcacacagaaagctttgtgtttgttgaa
tgaatggttggaagggtagcttaaagttaaatagctaattagctagttag
ttagtgtttgtttaggtgggaattgggtttttgctgttactggtctcagg
tgggacagataaagtactctaacatttgagctctgccacaaggtttaagt
tacagtttatatgagtgtatgtatacatacacacatgtatacatgtacac
ataggtttctgtgtttaaatcatgcttctgcctctttggctacagcaacc
ttagaaacattattttagctggaagcctgttgcactagctacactgtggg
gagatgattatgaagtgggtgtagtggtttgcacctttccttaggacacc
ctggaagcaaaggcaggagaattgacagtcctagccctgagcctcacagc
aagacaacaatagtaggggct
gaattctcagattttcccgaaccattcagatccgtcaaagaggttatatg
cagcttgtttgtgtttattttgcacaaacatggctctgtggtgtattatt
aataaaccagggcctcttggcatatacctctgtcttagattgatatggct
ctgaaatctagttgcccgtcattgactaactggccctcatagcacacctt
attcccaaatcagaccaaagccacaatatgtattgaatatgcttcttcat
attgatgaatttctgccaccctcacttgctggaggcgaggctgcacactt
gctgaaatcagactgtgaggtgttgactgacctgcttgaagaacaaagtt
gaggcagtgaaaagcaacaggataaaagcttctttgtggaagcccaggta
ctttattcagttgcaaattagcaacaatcacgctcagactctggcctccc
gagtgggggagcggtgtgggggagctggttttgagaattagcagaaaggc
cagagattctctgaaggtggaggctgtgctccaaattaactttgctaggt
aattaagatttttagctatcttcaataggaatctctaatattggaattat
tactagaccagtccaagattgagatagaataaatggtcacattgaaggaa
agagaagaatcattataactctttcttagactaatctttctaagtcagat
tccacggtctttaacgttctatgccccataagataaaaaacttgaagcaa
ggcacctttagcttgttccattctgggacaaaggcaagcaagggtgggtc
aaaacatatacccaattcatcttttcttgtcaacacagtcagggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_5745591_5746161
seq2: B6Ng01-126H09.b_49_619 (reverse)

seq1  AGCCCCTACTATTGTTGTCTTGCTGTGTGGCTCAGGGCTAGGACTGTCAA  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCCCCTACTATTGTTGTCTTGCTGTGAGGCTCAGGGCTAGGACTGTCAA  50

seq1  TTCTCCTGCCTTTGCTTCCAGGGTGTCCTAAGGAAAGGTGCAAACCACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGCCTTTGCTTCCAGGGTGTCCTAAGGAAAGGTGCAAACCACTA  100

seq1  CACCCACTTCATAATCATCTCCCCACAGTGTAGCTAGTGCAACAGGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTTCATAATCATCTCCCCACAGTGTAGCTAGTGCAACAGGCTTC  150

seq1  CAGCTAAAATAATGTTTCTAAGGTTGCTGTAGCCAAAGAGGCAGAAGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAAATAATGTTTCTAAGGTTGCTGTAGCCAAAGAGGCAGAAGCAT  200

seq1  GATTTAAACACAGAAACCTATGTGTACATGTATACATGTGTGTATGTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAACACAGAAACCTATGTGTACATGTATACATGTGTGTATGTATA  250

seq1  CATACACTCATATAAACTGTAACTTAAACCTTGTGGCAGAGCTCAAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACTCATATAAACTGTAACTTAAACCTTGTGGCAGAGCTCAAATGT  300

seq1  TAGAGTACTTTATCTGTCCCACCTGAGACCAGTAACAGCAAAAACCCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTACTTTATCTGTCCCACCTGAGACCAGTAACAGCAAAAACCCAAT  350

seq1  TCCCACCTAAACAAACACTAACTAACTAGCTAATTAGCTATTTAACTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCTAAACAAACACTAACTAACTAGCTAATTAGCTATTTAACTTTA  400

seq1  AGCTACCCTTCCAACCATTCATTCAACAAACACAAAGCTTTCTGTGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCCTTCCAACCATTCATTCAACAAACACAAAGCTTTCTGTGTGAG  450

seq1  CACATGGAGTATAGTGTATATGGCATACAGAAATCACTGCCCACATGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGAGTATAGTGTATATGGCATACAGAAATCACTGCCCACATGGTG  500

seq1  CAAGATAGACAAGGAGAATGCACATTGGACCAGCAGATTAGTCAATGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAGACAAGGAGAATGCACATTGGACCAGCAGATTAGTCAATGACA  550

seq1  GTGAAGGTGGCCCAGGAATTC  571
      |||||||||||||||||||||
seq2  GTGAAGGTGGCCCAGGAATTC  571

seq1: chr11_5594911_5595586
seq2: B6Ng01-126H09.g_72_747

seq1  GAATTCTCAGATTTTCCCGAACCATTCAGATCCGTCAAAGAGGTTATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGATTTTCCCGAACCATTCAGATCCGTCAAAGAGGTTATATG  50

seq1  CAGCTTGTTTGTGTTTATTTTGCACAAACATGGCTCTGTGGTGTATTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGTTTGTGTTTATTTTGCACAAACATGGCTCTGTGGTGTATTATT  100

seq1  AATAAACCAGGGCCTCTTGGCATATACCTCTGTCTTAGATTGATATGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACCAGGGCCTCTTGGCATATACCTCTGTCTTAGATTGATATGGCT  150

seq1  CTGAAATCTAGTTGCCCGTCATTGACTAACTGGCCCTCATAGCACACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATCTAGTTGCCCGTCATTGACTAACTGGCCCTCATAGCACACCTT  200

seq1  ATTCCCAAATCAGACCAAAGCCACAATATGTATTGAATATGCTTCTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAAATCAGACCAAAGCCACAATATGTATTGAATATGCTTCTTCAT  250

seq1  ATTGATGAATTTCTGCCACCCTCACTTGCTGGAGGCGAGGCTGCACACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGAATTTCTGCCACCCTCACTTGCTGGAGGCGAGGCTGCACACTT  300

seq1  GCTGAAATCAGACTGTGAGGTGTTGACTGACCTGCTTGAAGAACAAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAATCAGACTGTGAGGTGTTGACTGACCTGCTTGAAGAACAAAGTT  350

seq1  GAGGCAGTGAAAAGCAACAGGATAAAAGCTTCTTTGTGGAAGCCCAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGTGAAAAGCAACAGGATAAAAGCTTCTTTGTGGAAGCCCAGGTA  400

seq1  CTTTATTCAGTTGCAAATTAGCAACAATCACGCTCAGACTCTGGCCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCAGTTGCAAATTAGCAACAATCACGCTCAGACTCTGGCCTCCC  450

seq1  GAGTGGGGGAGCGGTGTGGGGGAGCTGGTTTTGAGAATTAGCAGAAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGGGAGCGGTGTGGGGGAGCTGGTTTTGAGAATTAGCAGAAAGGC  500

seq1  CAGAGATTCTCTGAAGGTGGAGGCTGTGCTCCAAATTAACTTTGCTAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTCTCTGAAGGTGGAGGCTGTGCTCCAAATTAACTTTGCTAGGT  550

seq1  AATTAAGATTTTTAGCTATCTTCAATAGGAATCTCTAATATTGGAATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGATTTTTAGCTATCTTCAATAGGAATCTCTAATATTGGAATTAT  600

seq1  TACTAGACCAGTCCAAGATTGAGATAGAATAAATGGTCACATTGAAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGACCAGTCCAAGATTGAGATAGAATAAATGGTCACATTGAAGGAA  650

seq1  AGAGAAGAATCATTATAACTCTTTCT  676
      ||||||||||||||||||||||||||
seq2  AGAGAAGAATCATTATAACTCTTTCT  676