BAC Information

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BAC

Clone NameB6Ng01-126I07
Chromosome7 (Build37)11 (Build37)
Map Location 36,198,637 - 36,199,00231,756,065 - 31,756,354
singlet/doubletsingletsinglet
Overlap geneCcdc123
Upstream geneLOC668460, LOC668464, Kctd15, Chst8, Pepd, Cebpg, Cebpa, Slc7a10, Wdr88, Gpatch1, Rhpn2, C230052I12Rik
Downstream geneSlc7a9, 2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126I07.bB6Ng01-126I07.g
ACCDH928868DH928869
length366121
definitionDH928868|Mus musculus domesticus DNA, BAC clone: B6Ng01-126I07, 5' end.DH928869|Mus musculus domesticus DNA, BAC clone: B6Ng01-126I07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,198,637 - 36,199,002)(31,756,065 - 31,756,354)
sequence
tgagtgcattaagcttcctagttggttttctgggccctgtagagcttttt
tgttccctgtctttcacagtgtctgctcttcagcgtgctatttacactct
ccagatcaatggtggggagttagaagccgcctaggcttcccctcttgcca
ctagagaaaattgccagccaaggcgggtggagggtgtcttccattacccc
acgaggacaagacccctgcccgatctgtttccatttgtatcgatgagcaa
tttgctatttttatgacttcatttgtgtgctcctgtggacatgagggaca
gagtggagtcaggtgttggttgtccttggctggcaggagcaacgtgtgac
agtgggggggggggta
ttttcttgcttgctttatctttctttctttttaaaaatatttaattctct
ctctctctctctctctctctctctctctctctctctctctctctgtgtgt
gtgtgtgtgtgtgtgtgcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_36198637_36199002
seq2: B6Ng01-126I07.b_56_421

seq1  TGAGTGCATTAAGCTTCCTAGTTGGTTTTCTGGGCCCTGTAGAGCTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCATTAAGCTTCCTAGTTGGTTTTCTGGGCCCTGTAGAGCTTTTT  50

seq1  TGTTCCCTGTCTTTCACAGTGTCTGCTCTTCAGCGTGCTATTTACACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTGTCTTTCACAGTGTCTGCTCTTCAGCGTGCTATTTACACTCT  100

seq1  CCAGATCAATGGTGGGGAGTTAGAAGCCGCCTAGGCTTCCCCTCTTGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCAATGGTGGGGAGTTAGAAGCCGCCTAGGCTTCCCCTCTTGCCA  150

seq1  CTAGAGAAAATTGCCAGCCAAGGCGGGTGGAGGGTGTCTTCCATTACCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAAATTGCCAGCCAAGGCGGGTGGAGGGTGTCTTCCATTACCCC  200

seq1  ACGAGGACAAGACCCCTGCCCGATCTGTTTCCATTTGTATCGATGAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGACAAGACCCCTGCCCGATCTGTTTCCATTTGTATCGATGAGCAA  250

seq1  TTTGCTATTTTTATGACTTCATTTGTGTGCTCCTGTGGACATGAGGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATTTTTATGACTTCATTTGTGTGCTCCTGTGGACATGAGGGACA  300

seq1  GAGTGGAGTCAGGTGTTGGTTGTCCTTGGCTGGCAGGAGCAACGTGTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAGTCAGGTGTTGGTTGTCCTTGGCTGGCAGGAGCAACGTGTGAC  350

seq1  AGTGGGGGGGGGGGTA  366
      ||||||||||||||||
seq2  AGTGGGGGGGGGGGTA  366

seq1: chr11_31756065_31756354
seq2: B6Ng01-126I07.g_104_196 (reverse)

seq1  CATGCATGCACACACACATGCCCCTCCACACACACACAGAGAGAGAGAGA  50
          ||||||||||||||        |||||||||||| |||||||||||
seq2  ----CATGCACACACACA--------CACACACACACACAGAGAGAGAGA  38

seq1  GAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATTAAA  100
      ||||||||      |||||||||||||||||||||||||||| |||||||
seq2  GAGAGAGA------GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATTAAA  82

seq1  AATAAAATAAAATTTGAACTAGGTATAGTGGCTTGAGCCTTTAATCTCAG  150
       ||    |||||                                      
seq2  TAT-TTTTAAAA--------------------------------------  93

seq1  CACTTGGGAGGCAGAAGCAGGCAGATCTGATTTTGAGGCCAGACTGGTCT  200
                                                        
seq2  --------------------------------------------------  93

seq1  ACAGAACAAGTTCCAGGACAGTTGTGGCTACATGGAGAAACCCTATAACA  250
                                                        
seq2  --------------------------------------------------  93

seq1  ACAACAAAAAAATGAACTTAAAATAAAGATATTTTTAAAA  290
                                              
seq2  ----------------------------------------  93