BAC Information

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BAC

Clone NameB6Ng01-126N17
Chromosome11 (Build37)
Map Location 109,553,151 - 109,714,768
singlet/doubletdoublet
Overlap geneBC029169, 1700012B07Rik, 1700023C21Rik
Upstream geneCcdc46, LOC629945, Axin2, E030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a
Downstream geneLOC100041492, Abca8b, Abca8a, Abca9, Abca6, Abca5, Map2k6, LOC100041523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126N17.bB6Ng01-126N17.g
ACCDH929120DH929121
length586911
definitionDH929120|Mus musculus domesticus DNA, BAC clone: B6Ng01-126N17, 5' end.DH929121|Mus musculus domesticus DNA, BAC clone: B6Ng01-126N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,714,177 - 109,714,768)(109,553,151 - 109,554,076)
sequence
accaaagacattggagtgaggaaatggtttattagatgcagtgacacagc
acagcagggaagaattcaggggccgagtctacacagcatcccaaggggct
ccttttatgagaggggagcttctagggattcattcaggaggtgtctcaat
gtcctggtgtcctgtgataattgtgtctggggctttcggtagttagtgat
gtcctagccttgagacaatgatagtgttgtcctgcatcagaaacagctca
gcacaactgaaccggtatcctggtgtccctattctgcagctagggcttgt
gtgtgacaaacactctgaggggacaatggccctgtttggagacagcagtg
gccgtgctctcagccctgcttgctccaaggcaagccatcttgttctatga
ctagaatggttcagcacagcacctccttttccccagaacactgccaatgg
gttaaatcgtattataaaaggcaaaatgtatatctgaagcatgagaaact
gcctgcgttatctgttgctgtgtatcaaattactcgaacatttagttaga
cagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gaattctctggggtcactgggcaggagacatgtaaactttataacaacca
cagaggggacaggctgacttgtacgcccgaaacaaatgtgtactcagaag
caaagcgttctcaggctgggcaggcagcagaaatgagcaaggaatgtagg
ccgaaggcagcaaggagccatgaggagtttgtcaatcggagaggagcctc
cccagataaaagggagcagcggctttcacttttagctcaatgctgttttg
aactgacactgtccatcaatcaaatgtttgccgagaactagatatcgatc
tatattttggaactagagttgcacacaaaataagtggttttatttttttt
ctcacggagcatctttcaggcgagtaatttattctgagttttttccaaag
gaagctagaaatccagattgttatcccaattaagcatctccttttaaaaa
gaaaggaaaaatatgttggttgggattaaacaccatctcatgggaggcca
aacaagttcaccgtcattgcaagtttgctgccctattggagaacaagcct
tatcagtgtgaaacgatattaaaagcccaccctccaccacgctgatttga
catgctggggaaagtctacaaatgaggagacaagacaatgaagcattcgt
attatttaagacatggattcctagagcagaaaaatggcggctttatcttt
tttttttttttctcacagatcaaggccctggttagccttgagctcggggt
aaaggaacccagtctggtgacatctctgagcgcagccacaggccattgaa
tccctctctctttcctcccaacaaggtcaacatgtacttttgtggatact
aaagttgacaatataaagttttctaaacatagcatttttagaatcagaga
aggcaaattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_109714177_109714768
seq2: B6Ng01-126N17.b_49_640 (reverse)

seq1  ACACACACACACACACACACACACACACACACACTGTCTAACTAAATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACTGTCTAACTAAATGTT  50

seq1  CGAGTAATTTGATACACAGCAACAGATAACGCAGGCAGTTTCTCATGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTAATTTGATACACAGCAACAGATAACGCAGGCAGTTTCTCATGCTT  100

seq1  CAGATATACATTTTGCCTTTTATAATACGATTTAACCCATTGGCAGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATACATTTTGCCTTTTATAATACGATTTAACCCATTGGCAGTGTT  150

seq1  CTGGGGAAAAGGAGGTGCTGTGCTGAACCATTCTAGTCATAGAACAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAAAGGAGGTGCTGTGCTGAACCATTCTAGTCATAGAACAAGAT  200

seq1  GGCTTGCCTTGGAGCAAGCAGGGCTGAGAGCACGGCCACTGCTGTCTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCCTTGGAGCAAGCAGGGCTGAGAGCACGGCCACTGCTGTCTCCA  250

seq1  AACAGGGCCATTGTCCCCTCAGAGTGTTTGTCACACACAAGCCCTAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGCCATTGTCCCCTCAGAGTGTTTGTCACACACAAGCCCTAGCTG  300

seq1  CAGAATAGGGACACCAGGATACCGGTTCAGTTGTGCTGAGCTGTTTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAGGGACACCAGGATACCGGTTCAGTTGTGCTGAGCTGTTTCTGA  350

seq1  TGCAGGACAACACTATCATTGTCTCAAGGCTAGGACATCACTAACTACCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGACAACACTATCATTGTCTCAAGGCTAGGACATCACTAACTACCG  400

seq1  AAAGCCCCAGACACAATTATCACAGGACACCAGGACATTGAGACACCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCCAGACACAATTATCACAGGACACCAGGACATTGAGACACCTCC  450

seq1  TGAATGAATCCCTAGAAGCTCCCCTCTCATAAAAGGAGCCCCTTGGGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATCCCTAGAAGCTCCCCTCTCATAAAAGGAGCCCCTTGGGATG  500

seq1  CTGTGTAGACTCGGCCCCTGAATTCTTCCCTGCTGTGCTGTGTCACTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAGACTCGGCCCCTGAATTCTTCCCTGCTGTGCTGTGTCACTGCA  550

seq1  TCTAATAAACCATTTCCTCACTCCAATGTCTTTGGTGAATTC  592
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAAACCATTTCCTCACTCCAATGTCTTTGGTGAATTC  592

seq1: chr11_109553151_109554076
seq2: B6Ng01-126N17.g_69_979

seq1  GAATTCTCTGGGGTCACTGGGCAGGAGACATGTAAACTTTATAACAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGGGTCACTGGGCAGGAGACATGTAAACTTTATAACAACCA  50

seq1  CAGAGGGGACAGGCTGACTTGTACGCCCGAAACAAATGTGTACTCAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGGACAGGCTGACTTGTACGCCCGAAACAAATGTGTACTCAGAAG  100

seq1  CAAAGCGTTCTCAGGCTGGGCAGGCAGCAGAAATGAGCAAGGAATGTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCGTTCTCAGGCTGGGCAGGCAGCAGAAATGAGCAAGGAATGTAGG  150

seq1  CCGAAGGCAGCAAGGAGCCATGAGGAGTTTGTCAATCGGAGAGGAGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGGCAGCAAGGAGCCATGAGGAGTTTGTCAATCGGAGAGGAGCCTC  200

seq1  CCCAGATAAAAGGGAGCAGCGGCTTTCACTTTTAGCTCAATGCTGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATAAAAGGGAGCAGCGGCTTTCACTTTTAGCTCAATGCTGTTTTG  250

seq1  AACTGACACTGTCCATCAATCAAATGTTTGCCGAGAACTAGATATCGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACACTGTCCATCAATCAAATGTTTGCCGAGAACTAGATATCGATC  300

seq1  TATATTTTGGAACTAGAGTTGCACACAAAATAAGTGGTTTTATTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTGGAACTAGAGTTGCACACAAAATAAGTGGTTTTATTTTTTTT  350

seq1  CTCACGGAGCATCTTTCAGGCGAGTAATTTATTCTGAGTTTTTTCCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGGAGCATCTTTCAGGCGAGTAATTTATTCTGAGTTTTTTCCAAAG  400

seq1  GAAGCTAGAAATCCAGATTGTTATCCCAATTAAGCATCTCCTTTTAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAGAAATCCAGATTGTTATCCCAATTAAGCATCTCCTTTTAAAAA  450

seq1  GAAAGGAAAAATATGTTGGTTGGGATTAAACACCATCTCATGGGAGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAAAATATGTTGGTTGGGATTAAACACCATCTCATGGGAGGCCA  500

seq1  AACAAGTTCACCGTCATTGCAAGTTTGCTGCCCTATTGGAGAACAAGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTTCACCGTCATTGCAAGTTTGCTGCCCTATTGGAGAACAAGCCT  550

seq1  TATCAGTGTGAAACGATATTAAAAGCCCACCCTCCACCACGCTGATTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTGTGAAACGATATTAAAAGCCCACCCTCCACCACGCTGATTTGA  600

seq1  CATGCTGGGGAAAGTCTACAAATGAGGAGACAAGACAATGAAGCATTCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGGGAAAGTCTACAAATGAGGAGACAAGACAATGAAGCATTCGT  650

seq1  ATTATTTAAGACATGGATTCCTAGAGCAGAAAAATGGCGGCTTTATCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATTATTTAAGACATGGATTCCTAGAGCAGAAAAATGGCGGCTTTATC-TT  699

seq1  TTTTTTTTTTTTCTCACAAGATCAAGGCCCTGGTTAGCCTTGAGCTCGGG  750
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTCTCAC-AGATCAAGGCCCTGGTTAGCCTTGAGCTCGGG  748

seq1  GTAGAGGAACCCAGTCTGGTGACATCTCTGAAGCGCAGCCACAGGCCATT  800
      ||| |||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTAAAGGAACCCAGTCTGGTGACATCTCTG-AGCGCAGCCACAGGCCATT  797

seq1  GAATCCCTCCTCTCTTTCCCTCCCCAACAAAGGGTCAACATGTACTTTTG  850
      |||||||| ||||||||||   ||||||||  ||||||||||||||||||
seq2  GAATCCCT-CTCTCTTTCC--TCCCAACAA--GGTCAACATGTACTTTTG  842

seq1  TGATTACTAAAAGTGACCAATATTAAAGTTTTCTAGACATAGCATTTTAT  900
      ||  |||||||  ||| ||||| |||||||||||| |||||||||||| |
seq2  TGGATACTAAAGTTGA-CAATA-TAAAGTTTTCTAAACATAGCATTTT-T  889

seq1  AGAAATCAAGGGAGAGGGCAAATTGT  926
      || |||||   |||| ||||||||||
seq2  AG-AATCA---GAGAAGGCAAATTGT  911