BAC Information

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BAC

Clone NameB6Ng01-127A23
Chromosome11 (Build37)
Map Location 25,721,604 - 25,852,085
singlet/doubletdoublet
Overlap gene5730522E02Rik
Upstream geneLOC100042282
Downstream geneLOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127A23.bB6Ng01-127A23.g
ACCDH929276DH929277
length1,1921,091
definitionDH929276|Mus musculus domesticus DNA, BAC clone: B6Ng01-127A23, 5' end.DH929277|Mus musculus domesticus DNA, BAC clone: B6Ng01-127A23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,850,851 - 25,852,085)(25,721,604 - 25,722,657)
sequence
gaattccacccacaacattataggttattgtcaaagttattcgttatcct
tcctaagcagatgagaaggccctgttgttacaaacacaattcacttatgt
aatatcacctggtttatctgtgtaatgaaaacaactagtacactgatatg
tgcaacctgtcccacatttgtggctttccctaggaagtttccattcaaat
atgagtattgtatgtgctgtgtattctgatgtctacaaacttagcattgc
aaagacaactcttaactgagttttctgtgtgaacagcccaacattcttgc
tacagattcaatattctgagtattgaatatcttggaacataaatttccac
aagcactgcttacattgtccagcagaattacaatacatttgcacaattgt
acaatggctactttaatttttaaaaatagtacaggtgcacaaaattattg
aaagtatgcaaatgtttagagatttgtactaaaataagatgccacccttt
ggttcacatacaggatttgttagtgtggatgtaatatgtggtcaatgaat
ttattaaatagtatgtagttgacaagcctacttgactaaaagggaaatgc
tgctagaatgtttatcctcaggtctgagtatttcattcaataaatgctcc
acaaatagaaaacaccacttggggaaatttatgcggaatttgttgtctta
caaaagcaggggtcatttcaatgatgcttactaagaaattataaactcaa
aatgtatagtttaaaaattgcccttgtgttgatttttaaaattgttactt
ttcttttagacaagaattaacacttaattatgatttacttttattgagct
taagattactcaagcaaaacctatgtatattgaagtgatttatttaaaag
gacaagattgcttgagttatgaatgatgacatggcctagatgagtgtggc
acctatgtcaattattgtcaatttttggagacagtttgtatgaaaatatc
atatttcagggtaagatgctaaggacatgtatgtttctcatgcgtgtcat
gaccaggagcaagtgcagcgaacacgagggttcaaggtaactgtgcagca
taggttgagatctccatgcccattggatgctctctggatggaagctgttt
tcgaagatgtaagaaacacgttctcccctcgaacactcatta
gaattcactccatatcagtttggttgacagagttccaaagatcaggtgga
caaatggccttctttccaactaccactttcctgggatctgatattgctaa
tttcaaggggcgcttgccaaagtagctcacaacacactggctatgattta
tgcaagacgtgggagaacttccttctctctaagtgtctagtgattagtaa
aatatcaattcatcttattctgaattattttgatcaaggctgttgagaga
cactataaatttttttctttttcttctattattgtttcagactttgcaaa
aatgattcaaagaatctaagtacaacttttacccaaatttcctaaatatt
agcatatatcaaatatttattaatgttaataagtttgtcaaaatgaagga
gttaatattaaaattcagtcactctataataaacagagtttacccaatat
taccttatctgagtggtctaagattaccaacaatggtttacctgatattc
ataattttttccttaatttcctctagtctcatcagaatatctatgtcctc
catagtgcccagactgtggagtgcttcaagatagcagagatcatattagt
ctttcaaacgcccatagtttaatatgaaataaaaataaacctaaaagtta
gatattagaaaacatgcggaagttatttttggattagaaagaaagaaaca
ttgtttattattttttaaaaatcaaacctggaatgatgctgtgccatact
cctccatacccaaataccatcaggagaagagcctgtcttctgaggaatga
aaaatacaccttgtgagcacagctaggaccccacttctgctgaaattcct
ggcccaagaggacttgcccagtgcatcaggcacaggatccaggaacagct
gaagacaggatacttcatgtttcctctgcatcctggagctgactgtgcca
caggtctccatacccaaattccttctgaagagacctggttctcccagaga
tacttggaccacagcttgccgagagggcaagcccagtccgaagagagaga
gacctctcttacccggagaacgatggtggagagcaagacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_25850851_25852085
seq2: B6Ng01-127A23.b_47_1238 (reverse)

seq1  TAATGAAAGGTTCGGAGGGGAGAAATGTGTTCTCTTCCATCCTTTTCCTG  50
      ||||| |  |||| |||||||| || ||||| |||| ||||   |||  |
seq2  TAATG-AGTGTTC-GAGGGGAG-AACGTGTT-TCTTACATC---TTC--G  41

seq1  AAAAAAACAAAGCTTCCCAATTCAAGAGAGCAATTCCAATGTGGCATGTG  100
      |||     | |||||||    || ||||||||  ||||||| ||||  ||
seq2  AAA-----ACAGCTTCC---ATCCAGAGAGCA--TCCAATG-GGCA--TG  78

seq1  AAGATACTCAACCTATGGCTGCACAGTTACACTCTGAA-CCTCGTGTTCG  149
       |||| |||||||||| ||||||||||||| || |||| |||||||||||
seq2  GAGAT-CTCAACCTAT-GCTGCACAGTTAC-CT-TGAACCCTCGTGTTCG  124

seq1  GCTTGCACTTTTGCTTCTCTGGGTCATGACACGCCATGAGAAAACATACA  199
         |||||  ||||| ||   |||||||||||| |||||| |||||||||
seq2  --CTGCAC--TTGCTCCT---GGTCATGACACG-CATGAG-AAACATACA  165

seq1  TGTCCTTTAGCATCTTTACCCCTGAAAATATGATATTTTCATAACAAACT  249
      ||||| ||||||||||   ||||| ||||||||||||||||| |||||| 
seq2  TGTCC-TTAGCATCTT--ACCCTG-AAATATGATATTTTCAT-ACAAAC-  209

seq1  TGTCTCCAAAAATTGACAAATAAATTGACATAGGTGCCACACTCATCTAG  299
      |||||||||||||||||||   ||||||||||||||||||||||||||||
seq2  TGTCTCCAAAAATTGACAA--TAATTGACATAGGTGCCACACTCATCTAG  257

seq1  GCCATGTCATCATTCATAACTCAAGCAATCTTTGTCCTTTTAAATAAATC  349
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCCATGTCATCATTCATAACTCAAGCAATC-TTGTCCTTTTAAATAAATC  306

seq1  ACTTCAATATACATAGGTTTTGCTTGAGTAATCTTAAGCTCAATAAAAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATATACATAGGTTTTGCTTGAGTAATCTTAAGCTCAATAAAAGT  356

seq1  AAATCATAATTAAGTGTTAATTCTTGTCTAAAAGAAAAGTAACAATTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATAATTAAGTGTTAATTCTTGTCTAAAAGAAAAGTAACAATTTTA  406

seq1  AAAATCAACACAAGGGCAATTTTTAAACTATACATTTTGAGTTTATAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAACACAAGGGCAATTTTTAAACTATACATTTTGAGTTTATAATT  456

seq1  TCTTAGTAAGCATCATTGAAATGACCCCTGCTTTTGTAAGACAACAAATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTAAGCATCATTGAAATGACCCCTGCTTTTGTAAGACAACAAATT  506

seq1  CCGCATAAATTTCCCCAAGTGGTGTTTTCTATTTGTGGAGCATTTATTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCATAAATTTCCCCAAGTGGTGTTTTCTATTTGTGGAGCATTTATTGA  556

seq1  ATGAAATACTCAGACCTGAGGATAAACATTCTAGCAGCATTTCCCTTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATACTCAGACCTGAGGATAAACATTCTAGCAGCATTTCCCTTTTA  606

seq1  GTCAAGTAGGCTTGTCAACTACATACTATTTAATAAATTCATTGACCACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTAGGCTTGTCAACTACATACTATTTAATAAATTCATTGACCACA  656

seq1  TATTACATCCACACTAACAAATCCTGTATGTGAACCAAAGGGTGGCATCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACATCCACACTAACAAATCCTGTATGTGAACCAAAGGGTGGCATCT  706

seq1  TATTTTAGTACAAATCTCTAAACATTTGCATACTTTCAATAATTTTGTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGTACAAATCTCTAAACATTTGCATACTTTCAATAATTTTGTGC  756

seq1  ACCTGTACTATTTTTAAAAATTAAAGTAGCCATTGTACAATTGTGCAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTACTATTTTTAAAAATTAAAGTAGCCATTGTACAATTGTGCAAAT  806

seq1  GTATTGTAATTCTGCTGGACAATGTAAGCAGTGCTTGTGGAAATTTATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTAATTCTGCTGGACAATGTAAGCAGTGCTTGTGGAAATTTATGT  856

seq1  TCCAAGATATTCAATACTCAGAATATTGAATCTGTAGCAAGAATGTTGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGATATTCAATACTCAGAATATTGAATCTGTAGCAAGAATGTTGGG  906

seq1  CTGTTCACACAGAAAACTCAGTTAAGAGTTGTCTTTGCAATGCTAAGTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCACACAGAAAACTCAGTTAAGAGTTGTCTTTGCAATGCTAAGTTT  956

seq1  GTAGACATCAGAATACACAGCACATACAATACTCATATTTGAATGGAAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACATCAGAATACACAGCACATACAATACTCATATTTGAATGGAAAC  1006

seq1  TTCCTAGGGAAAGCCACAAATGTGGGACAGGTTGCACATATCAGTGTACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGGGAAAGCCACAAATGTGGGACAGGTTGCACATATCAGTGTACT  1056

seq1  AGTTGTTTTCATTACACAGATAAACCAGGTGATATTACATAAGTGAATTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTTCATTACACAGATAAACCAGGTGATATTACATAAGTGAATTG  1106

seq1  TGTTTGTAACAACAGGGCCTTCTCATCTGCTTAGGAAGGATAACGAATAA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTAACAACAGGGCCTTCTCATCTGCTTAGGAAGGATAACGAATAA  1156

seq1  CTTTGACAATAACCTATAATGTTGTGGGTGGAATTC  1235
      ||||||||||||||||||||||||||||||||||||
seq2  CTTTGACAATAACCTATAATGTTGTGGGTGGAATTC  1192

seq1: chr11_25721604_25722657
seq2: B6Ng01-127A23.g_65_1155

seq1  GAATTCACTCCATATCAGTTTGGTTGACAGAGTTCCAAAGATCAGGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCATATCAGTTTGGTTGACAGAGTTCCAAAGATCAGGTGGA  50

seq1  CAAATGGCCTTCTTTCCAACTACCACTTTCCTGGGATCTGATATTGCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCCTTCTTTCCAACTACCACTTTCCTGGGATCTGATATTGCTAA  100

seq1  TTTCAAGGGGCGCTTGCCAAAGTAGCTCACAACACACTGGCTATGATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGGGCGCTTGCCAAAGTAGCTCACAACACACTGGCTATGATTTA  150

seq1  TGCAAGACGTGGGAGAACTTCCTTCTCTCTAAGTGTCTAGTGATTAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGACGTGGGAGAACTTCCTTCTCTCTAAGTGTCTAGTGATTAGTAA  200

seq1  AATATCAATTCATCTTATTCTGAATTATTTTGATCAAGGCTGTTGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAATTCATCTTATTCTGAATTATTTTGATCAAGGCTGTTGAGAGA  250

seq1  CACTATAAATTTTTTTCTTTTTCTTCTATTATTGTTTCAGACTTTGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAAATTTTTTTCTTTTTCTTCTATTATTGTTTCAGACTTTGCAAA  300

seq1  AATGATTCAAAGAATCTAAGTACAACTTTTACCCAAATTTCCTAAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTCAAAGAATCTAAGTACAACTTTTACCCAAATTTCCTAAATATT  350

seq1  AGCATATATCAAATATTTATTAATGTTAATAAGTTTGTCAAAATGAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATATCAAATATTTATTAATGTTAATAAGTTTGTCAAAATGAAGGA  400

seq1  GTTAATATTAAAATTCAGTCACTCTATAATAAACAGAGTTTACCCAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATTAAAATTCAGTCACTCTATAATAAACAGAGTTTACCCAATAT  450

seq1  TACCTTATCTGAGTGGTCTAAGATTACCAACAATGGTTTACCTGATATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTATCTGAGTGGTCTAAGATTACCAACAATGGTTTACCTGATATTC  500

seq1  ATAATTTTTTCCTTAATTTCCTCTAGTCTCATCAGAATATCTATGTCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTTTCCTTAATTTCCTCTAGTCTCATCAGAATATCTATGTCCTC  550

seq1  CATAGTGCCCAGACTGTGGAGTGCTTCAAGATAGCAGAGATCATATTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGCCCAGACTGTGGAGTGCTTCAAGATAGCAGAGATCATATTAGT  600

seq1  CTTTCAAACGCCCATAGTTTAATATGAAATAAAAATAAACCTAAAAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAACGCCCATAGTTTAATATGAAATAAAAATAAACCTAAAAGTTA  650

seq1  GATATTAGAAAACATGCGGAAGTTA-TTTTGGATTAGAAAGAAAGAAACA  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GATATTAGAAAACATGCGGAAGTTATTTTTGGATTAGAAAGAAAGAAACA  700

seq1  TTGTTTAT--ATTTTTAAAAATCAAACCTGGAATGATGCTGTGCCATACT  747
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATTATTTTTTAAAAATCAAACCTGGAATGATGCTGTGCCATACT  750

seq1  -CTCCATACCCAAATACCATCAGGAG-AGAGCCTGTC-TCTGAGGAATG-  793
       ||||||||||||||||||||||||| |||||||||| ||||||||||| 
seq2  CCTCCATACCCAAATACCATCAGGAGAAGAGCCTGTCTTCTGAGGAATGA  800

seq1  AAAATACACC-TGTGAGCACAGCTAGGACCCCCACTTCTGCTGAAATTCC  842
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  AAAATACACCTTGTGAGCACAGCTAGGA-CCCCACTTCTGCTGAAATTCC  849

seq1  TGGCCCAAGAGGAACTTGCCCAGTGCCATCAGGGCACAGGATCCAAGGAA  892
      |||||||||||| |||||||||||| ||||| |||||||||||| |||||
seq2  TGGCCCAAGAGG-ACTTGCCCAGTG-CATCA-GGCACAGGATCC-AGGAA  895

seq1  CAGCTGAAGACAGGATACTTCATGTTTCCCTCTGCATCCTGGAGCTGAAC  942
      ||||||||||||||||||||||||||| ||||||||||||||||||||  
seq2  CAGCTGAAGACAGGATACTTCATGTTT-CCTCTGCATCCTGGAGCTGA--  942

seq1  CTGTGCCACAGGTCTCCATACCCAAATTCCTTCTGAAGAGAACTGG-TCT  991
      ||||||||||||||||||||||||||||||||||||||||| |||| |||
seq2  CTGTGCCACAGGTCTCCATACCCAAATTCCTTCTGAAGAGACCTGGTTCT  992

seq1  CACAGGAGTACT--GACACACAGGCTTGCAG-GAGGGACAAGCCACAGTC  1038
      | |||   ||||  ||| |||| |||||| | ||||| |||||| |||||
seq2  CCCAGAGATACTTGGAC-CACA-GCTTGCCGAGAGGG-CAAGCC-CAGTC  1038

seq1  AG-AGAGAGCAAGACCA---------------------------------  1054
       | ||||||  |||||                                  
seq2  CGAAGAGAGAGAGACCTCTCTTACCCGGAGAACGATGGTGGAGAGCAAGA  1088

seq1  ---  1054
         
seq2  CCA  1091