BAC Information

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BAC

Clone NameB6Ng01-127P24
Chromosome11 (Build37)
Map Location 43,285,356 - 43,522,012
singlet/doubletdoublet
Overlap geneC1qtnf2, Ccnjl, Fabp6, LOC620562, 4631424J17Rik
Upstream geneGabrb2, Atp10b, EG544767, Pttg1, Slu7, LOC100039392
Downstream geneTtc1, Adra1b, Il12b, Ublcp1, 3732413I11Rik, Ebf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127P24.bB6Ng01-127P24.g
ACCDH929965DH929966
length675757
definitionDH929965|Mus musculus domesticus DNA, BAC clone: B6Ng01-127P24, 5' end.DH929966|Mus musculus domesticus DNA, BAC clone: B6Ng01-127P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,521,341 - 43,522,012)(43,285,356 - 43,286,119)
sequence
gaattccatagatcagatcggcctcaatcttagagaacatgctagggcta
aaggcatgtaccagcacacagagccaaatattcctttgttcattttctgg
acaagaattcattatgtgccctggtcaatctctaagtcactcaaccctct
tgcatccacctctcaaatgataggatcactagaacatgccatcactcctg
gctgaatgttatttatatactccacaatcacagattgtattttcccatgt
agcttctgaaataggacaaatggtttatgccataaagatacattgccaaa
gtgtctgactgtattagcaacacccactttcaaagtcacaactacaacag
cccagatcacacacttcacattactttttagatgactctcgcataaatca
gttttttaaaaggtaaacaaacaagtactctaatctaaaacagttactca
gaaaacctaggatatttccctcataagcccttcatcacactgtgagcttt
cagactgtcataatcagattagtttctgtttgcaggaaagaatatgtatc
tttttctttgtgtgtttattaaaatcaaaaagcattgactaagttcccca
gaagaaatttctattttttctttcccagaaataatcaggtatcaagctta
aggaagttcatttccaaatttcatt
gaattcttttgcaggacctttcctccttagtgagtctaaaaactcagacg
cagcctagaccagggcatgcttgcctacctggtataagcaaggggtacac
aaatcgggacgtggctctagccagtgggaggagcaactgagaagggctct
agacagtggtgtttcaggcaagcaggctagaggctggctcacactagtga
tttctattatttattgtcccccccttacaatatgtcaaactaccaaccca
gcattgttagagttcagaagagaggcacagagaggttgtggggacccagt
agaccaccagttaataattcaaagaaatggcttcattcacatcatctcac
attgaaagaacttcacacaaaaggaaaggtttgaagtgggtatgggaggc
agacactgcagtgagtctccttctatagttactgacaggaactcattgaa
gctagtttaaagagaggataagagtaagagaataggacttctgtcacaac
tattacaagtatcagaacaaaggctttaataaagtagccatggcactctg
tcccctccagttcttatgtgagactgtcactgtctcttttcataagcagg
ttctttccaagtggcatgaagctatggctcaaggacaataggactatgtc
tctgaagttaatacttcagaagaaaatcggtacctttcttttctttttgt
tttctttctttttctttgtttttttttttgtttttatttttttttggatg
tttggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_43521341_43522012
seq2: B6Ng01-127P24.b_48_722 (reverse)

seq1  AATGAAATTTGGAAATGAACTTCCTTAAGCTTGATACCTGATTATTTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATTTGGAAATGAACTTCCTTAAGCTTGATACCTGATTATTTCTG  50

seq1  GGAAAG--AAAATAG-AATTTCTTCTGGGGAACTTAGTCAATGCTTTTTG  97
      ||||||  ||||||| ||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAAAAATAGAAATTTCTTCTGGGGAACTTAGTCAATGCTTTTTG  100

seq1  ATTTTAATAAACACACAAAGAAAAAGATACATATTCTTTCCTGCAAACAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATAAACACACAAAGAAAAAGATACATATTCTTTCCTGCAAACAG  150

seq1  AAACTAATCTGATTATGACAGTCTGAAAGCTCACAGTGTGATGAAGGGCT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATCTGATTATGACAGTCTGAAAGCTCACAGTGTGATGAAGGGCT  200

seq1  TATGAGGGAAATATCCTAGGTTTTCTGAGTAACTGTTTTAGATTAGAGTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGGAAATATCCTAGGTTTTCTGAGTAACTGTTTTAGATTAGAGTA  250

seq1  CTTGTTTGTTTACCTTTTGAAAAACTGATTTATGCGAGAGTCATCTAAAA  297
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTGTTTGTTTACCTTTTAAAAAACTGATTTATGCGAGAGTCATCTAAAA  300

seq1  AGTAATGTGAAGTGTGTGATCTGGGCTGTTGTAGTTGTGACTTTGAAAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGTGAAGTGTGTGATCTGGGCTGTTGTAGTTGTGACTTTGAAAGT  350

seq1  GGGTGTTGCTAATACAGTCAGACACTTTGGCAATGTATCTTTATGGCATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTGCTAATACAGTCAGACACTTTGGCAATGTATCTTTATGGCATA  400

seq1  AACCATTTGTCCTATTTCAGAAGCTACATGGGAAAATACAATCTGTGATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTGTCCTATTTCAGAAGCTACATGGGAAAATACAATCTGTGATT  450

seq1  GTGGAGTATATAAATAACATTCAGCCAGGAGTGATGGCATGTTCTAGTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTATATAAATAACATTCAGCCAGGAGTGATGGCATGTTCTAGTGA  500

seq1  TCCTATCATTTGAGAGGTGGATGCAAGAGGGTTGAGTGACTTAGAGATTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATCATTTGAGAGGTGGATGCAAGAGGGTTGAGTGACTTAGAGATTG  550

seq1  ACCAGGGCACATAATGAATTCTTGTCCAGAAAATGAACAAAGGAATATTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGCACATAATGAATTCTTGTCCAGAAAATGAACAAAGGAATATTT  600

seq1  GGCTCTGTGTGCTGGTACATGCCTTTAGCCCTAGCATGTTCTCTGAGATT  647
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGCTCTGTGTGCTGGTACATGCCTTTAGCCCTAGCATGTTCTCTAAGATT  650

seq1  GAGGCCGATCTGATCTATGGAATTC  672
      |||||||||||||||||||||||||
seq2  GAGGCCGATCTGATCTATGGAATTC  675

seq1: chr11_43285356_43286119
seq2: B6Ng01-127P24.g_69_825

seq1  GAATTCTTTTGCAGGACCTTTCCTCCTTAGTGAGTCTAAAAACTCAGACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGCAGGACCTTTCCTCCTTAGTGAGTCTAAAAACTCAGACG  50

seq1  CAGCCTAGACCAGGGCATGCTTGCCTACCTGGTATAAGCAAGGGGTACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAGACCAGGGCATGCTTGCCTACCTGGTATAAGCAAGGGGTACAC  100

seq1  AAATCGGGACGTGGCTCTAGCCAGTGGGAGGAGCAACTGAGAAGGGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGGGACGTGGCTCTAGCCAGTGGGAGGAGCAACTGAGAAGGGCTCT  150

seq1  AGACAGTGGTGTTTCAGGCAAGCAGGCTAGAGGCTGGCTCACACTAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTGGTGTTTCAGGCAAGCAGGCTAGAGGCTGGCTCACACTAGTGA  200

seq1  TTTCTATTATTTATTGTCCCCCCCTTACAATATGTCAAACTACCAACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTATTTATTGTCCCCCCCTTACAATATGTCAAACTACCAACCCA  250

seq1  GCATTGTTAGAGTTCAGAAGAGAGGCACAGAGAGGTTGTGGGGACCCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTTAGAGTTCAGAAGAGAGGCACAGAGAGGTTGTGGGGACCCAGT  300

seq1  AGACCACCAGTTAATAATTCAAAGAAATGGCTTCATTCACATCATCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACCAGTTAATAATTCAAAGAAATGGCTTCATTCACATCATCTCAC  350

seq1  ATTGAAAGAACTTCACACAAAAGGAAAGGTTTGAAGTGGGTATGGGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGAACTTCACACAAAAGGAAAGGTTTGAAGTGGGTATGGGAGGC  400

seq1  AGACACTGCAGTGAGTCTCCTTCTATAGTTACTGACAGGAACTCATTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGCAGTGAGTCTCCTTCTATAGTTACTGACAGGAACTCATTGAA  450

seq1  GCTAGTTTAAAGAGAGGATAAGAGTAAGAGAATAGGACTTCTGTCACAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTTAAAGAGAGGATAAGAGTAAGAGAATAGGACTTCTGTCACAAC  500

seq1  TATTACAAGTATCAGAACAAAGGCTTTAATAAAGTAGCCATGGCACTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAAGTATCAGAACAAAGGCTTTAATAAAGTAGCCATGGCACTCTG  550

seq1  TCCCCTCCAGTTCTTATGTGAGACTGTCACTGTCTCTTTTCATAAGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCAGTTCTTATGTGAGACTGTCACTGTCTCTTTTCATAAGCAGG  600

seq1  TTCTTTCCAAGTGGCATGAAGCTATGGCTCAAGGACAATAGGACTATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCAAGTGGCATGAAGCTATGGCTCAAGGACAATAGGACTATGTC  650

seq1  TCTGAAGTTAATACTTCAGAAGAAAATCGGTACCTTTCTTTTCTTTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TCTGAAGTTAATACTTCAGAAGAAAATCGGTACCTTTCTTTTCTTTTT--  698

seq1  TTTTTCTTTCTTTTTTCTTTTGTTTTTTTTTTTGTTTTTTTTTTTTTTTT  750
       ||||||||||||||   ||||||||||||||||||||| ||||||||| 
seq2  GTTTTCTTTCTTTTT--CTTTGTTTTTTTTTTTGTTTTTATTTTTTTTT-  745

seq1  TGTTATGTTTTGTT  764
          |||||| |||
seq2  --GGATGTTTGGTT  757