BAC Information

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BAC

Clone NameB6Ng01-128L04
Chromosome11 (Build37)
Map Location 59,111,041 - 59,265,497
singlet/doubletdoublet
Overlap geneWnt9a, Gm249, 1110031B06Rik, Jmjd4
Upstream geneZfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a
Downstream geneBC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225, AA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128L04.bB6Ng01-128L04.g
ACCDH930478DH930479
length1,138902
definitionDH930478|Mus musculus domesticus DNA, BAC clone: B6Ng01-128L04, 5' end.DH930479|Mus musculus domesticus DNA, BAC clone: B6Ng01-128L04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,264,355 - 59,265,497)(59,111,041 - 59,111,938)
sequence
gaattccatcccactctacagttcagagccttattgcgcacacaaatgat
acaggaattcaactgttcattggttcactcaatgttacactgtgcctttt
gctgggggtctgagtacaatggtctgtacttgtgaaagggacgtcaggta
gaggaaaacacacagtcgcagggtcaccatggaaaagggtaatgctcttc
ccaaagagagcatcacgtgagctgggtcttagggacagcccaaactcctg
agatgtagggagcgcctcggcttatgatggccttacgtactgacatgtcc
aagctgaaaataccataaatgtcaaaacatactaacagtatgtgtttata
tgctcacaaccttagcattcccagttccaaaaggaaaacacaacagtgtg
cctaagtgcatgactaccgtagcttagcacagcaacagagcacactgtaa
aggtgtgatcattttagtagatccgggggtttagatggaggttatggctt
cttgaccctgtccatcattgagagagaagggtgggagatgaacagaccat
atatagctagcctgggaagacaccataattcaaattttgaagtagtttct
actgactgcaatgcattcttgctccagcaagacgtcaaaaatctcctaag
taaagctgtcacaagatgctgtgtgagaaaagtggaagctgataagggag
agtattgaatgtgtctttaaagagtaaaggggtttccaaagtgggacaag
agtggttgcggaaaggtcactttgtccctttagagagcttagaatggccc
aggggatggcaagaatccccagagcaatcgtagaaggaacaagcgtcctc
tcagtggggttgcagagaggacagccccagaggatctgagataccagctc
aaaatacagaagaggaaggagacaccagccgcctgtacccatactagatg
tacgaagacttacctttcccataatagtctacctggctcgctatgttgat
ctcccacatcttcgcatcagttctggaacacattaaacttctgctgtaga
ggtagcccctctgattgcagtgggcgtgcctccactggactggctgcact
agctgcttaggtaaggtgccatatggccatgtgccgtc
gaattctgtctattctgcgcttggttgtttagctcctagaatgcccagtt
tataaattcaatgtcaccacaggtatgtgaggggaaattaatatatgtag
gactttgtggttgttactggtttcgtgcatttgtgtgagttttttgtttt
ttcctccagaagtgttgtgagatgcctttgcttggaccttctgtgcagat
gtgtggcatcatggagagagatgggtgcaggaccccagcctccggcttgc
ctgtggagccagcatcacatcccttgtcgtggatgggatgagcacacact
ggagaaccagtggtgagatccgaggacccaagcagctggttagatagagc
cctgaactctggaatcctatgattctcaaaccaaagggggcacctcagaa
taataagaaaatggaattcggagatttagaaagaaatcacaatgccgagg
ctctctggagccctagacttgtgtcaccgcgggtcagaatctatagattc
atgtttggcgttctgattcccaggctttttagcaggaagtttaaggcttg
agaccatttcagcctttcttagtgacagagttctgcttttcagtcaatac
tgccaccctgtggagatgctcagggcggagtagcttagaaaggactcggt
gttcctttgcaagtgaagcaggattcctgtagttgtggattttgtggtgt
ctcctctcagaaatctccacagttccatgggccaagtcaggctttggctt
gtgtggatgggtgcatctcatgacagtggagactgtcacttcctccctgc
tgtgtgccaagctctgtgtggaccaggcaggttacttctccttgggagat
ggaggtgtcaccatcttgactttatggtcagcggacattcctggtcctaa
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_59264355_59265497
seq2: B6Ng01-128L04.b_50_1187 (reverse)

seq1  GACGGCGCATGGCCATTGGGCACTTACCCTAAGCAGCTAGTGCAGCCAGT  50
      |||||| |||||||||  ||||| |  |||||||||||||||||||||||
seq2  GACGGCACATGGCCATATGGCACCTTACCTAAGCAGCTAGTGCAGCCAGT  50

seq1  CCAGGTGGA-GCACGCCCACTGCACTCAGAGGGGCTACCTCTACAGCAGA  99
      ||| ||||| |||||||||||||| |||||||||||||||||||||||||
seq2  CCA-GTGGAGGCACGCCCACTGCAATCAGAGGGGCTACCTCTACAGCAGA  99

seq1  GTTCTAATGTGTATCACAGAACTGATGCGAAGATGTGGGGAGATCAACAT  149
        | |||||||| || |||||||||||||||||||| |||||||||||||
seq2  AGTTTAATGTGT-TC-CAGAACTGATGCGAAGATGT-GGGAGATCAACAT  146

seq1  AGCGAGCCAGGTAGACTATTATGGGGAAGGTAAGTCTTTCGTACATCTTG  199
      ||||||||||||||||||||||||| |||||||||| ||||||||||| |
seq2  AGCGAGCCAGGTAGACTATTATGGGAAAGGTAAGTC-TTCGTACATCTAG  195

seq1  TATGGGTACAGGCGGCCTGGTGTCTCCTTCCTCTTCTGTATTTTTGAGCT  249
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  TATGGGTACAGGCGG-CTGGTGTCTCCTTCCTCTTCTGTA-TTTTGAGCT  243

seq1  GGTATCTCAGATCCTCTGGGGCTGTCCTCTCTGCAACCCCACTGAGAGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTCAGATCCTCTGGGGCTGTCCTCTCTGCAACCCCACTGAGAGGA  293

seq1  CGCTTGTTCCTTCTACGATTGCTCTGGGGATTCTTGCCATCCCCTGGGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTGTTCCTTCTACGATTGCTCTGGGGATTCTTGCCATCCCCTGGGCC  343

seq1  ATTCTAAGCTCTCTAAAGGGAC-AAGTGACCTTTCCGCAACCACTCTTGT  398
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTCTAAGCTCTCTAAAGGGACAAAGTGACCTTTCCGCAACCACTCTTGT  393

seq1  CCCACTTTGGAAACCCCTTTACTCTTTAAAGACACATTCAATACTCTCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTGGAAACCCCTTTACTCTTTAAAGACACATTCAATACTCTCCC  443

seq1  TTATCAGCTTCCACTTTTCTCACACAGCATCTTGTGACAGCTTTACTTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGCTTCCACTTTTCTCACACAGCATCTTGTGACAGCTTTACTTAG  493

seq1  GAGATTTTTGACGTCTTGCTGGAGCAAGAATGCATTGCAGTCAGTAGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTTGACGTCTTGCTGGAGCAAGAATGCATTGCAGTCAGTAGAAA  543

seq1  CTACTTCAAAATTTGAATTATGGTGTCTTCCCAGGCTAGCTATATATGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCAAAATTTGAATTATGGTGTCTTCCCAGGCTAGCTATATATGGT  593

seq1  CTGTTCATCTCCCACCCTTCTCTCTCAATGATGGACAGGGTCAAGAAGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATCTCCCACCCTTCTCTCTCAATGATGGACAGGGTCAAGAAGCC  643

seq1  ATAACCTCCATCTAAACCCCCGGATCTACTAAAATGATCACACCTTTACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTCCATCTAAACCCCCGGATCTACTAAAATGATCACACCTTTACA  693

seq1  GTGTGCTCTGTTGCTGTGCTAAGCTACGGTAGTCATGCACTTAGGCACAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTCTGTTGCTGTGCTAAGCTACGGTAGTCATGCACTTAGGCACAC  743

seq1  TGTTGTGTTTTCCTTTTGGAACTGGGAATGCTAAGGTTGTGAGCATATAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTTTTCCTTTTGGAACTGGGAATGCTAAGGTTGTGAGCATATAA  793

seq1  ACACATACTGTTAGTATGTTTTGACATTTATGGTATTTTCAGCTTGGACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACTGTTAGTATGTTTTGACATTTATGGTATTTTCAGCTTGGACA  843

seq1  TGTCAGTACGTAAGGCCATCATAAGCCGAGGCGCTCCCTACATCTCAGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTACGTAAGGCCATCATAAGCCGAGGCGCTCCCTACATCTCAGGA  893

seq1  GTTTGGGCTGTCCCTAAGACCCAGCTCACGTGATGCTCTCTTTGGGAAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGCTGTCCCTAAGACCCAGCTCACGTGATGCTCTCTTTGGGAAGA  943

seq1  GCATTACCCTTTTCCATGGTGACCCTGCGACTGTGTGTTTTCCTCTACCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACCCTTTTCCATGGTGACCCTGCGACTGTGTGTTTTCCTCTACCT  993

seq1  GACGTCCCTTTCACAAGTACAGACCATTGTACTCAGACCCCCAGCAAAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTCCCTTTCACAAGTACAGACCATTGTACTCAGACCCCCAGCAAAAG  1043

seq1  GCACAGTGTAACATTGAGTGAACCAATGAACAGTTGAATTCCTGTATCAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTGTAACATTGAGTGAACCAATGAACAGTTGAATTCCTGTATCAT  1093

seq1  TTGTGTGCGCAATAAGGCTCTGAACTGTAGAGTGGGATGGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGCGCAATAAGGCTCTGAACTGTAGAGTGGGATGGAATTC  1138

seq1: chr11_59111041_59111938
seq2: B6Ng01-128L04.g_66_966

seq1  GAATTCTGTCTATTCTGCGCTTGGTTGTTTAGCTCCTAGAATGCCCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTATTCTGCGCTTGGTTGTTTAGCTCCTAGAATGCCCAGTT  50

seq1  TATAAATTCAATGTCACCACAGGTATGTGAGGGGAAATTAATATATGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTCAATGTCACCACAGGTATGTGAGGGGAAATTAATATATGTAG  100

seq1  GACTTTGTGGTTGTTACTGGTTTCGTGCATTTGTGTGAGTTTTTTGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTGGTTGTTACTGGTTTCGTGCATTTGTGTGAGTTTTTTGTTTT  150

seq1  TTCCTCCAGAAGTGTTGTGAGATGCCTTTGCTTGGACCTTCTGTGCAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCAGAAGTGTTGTGAGATGCCTTTGCTTGGACCTTCTGTGCAGAT  200

seq1  GTGTGGCATCATGGAGAGAGATGGGTGCAGGACCCCAGCCTCCGGCTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCATCATGGAGAGAGATGGGTGCAGGACCCCAGCCTCCGGCTTGC  250

seq1  CTGTGGAGCCAGCATCACATCCCTTGTCGTGGATGGGATGAGCACACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAGCCAGCATCACATCCCTTGTCGTGGATGGGATGAGCACACACT  300

seq1  GGAGAACCAGTGGTGAGATCCGAGGACCCAAGCAGCTGGTTAGATAGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACCAGTGGTGAGATCCGAGGACCCAAGCAGCTGGTTAGATAGAGC  350

seq1  CCTGAACTCTGGAATCCTATGATTCTCAAACCAAAGGGGGCACCTCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTCTGGAATCCTATGATTCTCAAACCAAAGGGGGCACCTCAGAA  400

seq1  TAATAAGAAAATGGAATTCGGAGATTTAGAAAGAAATCACAATGCCGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGAAAATGGAATTCGGAGATTTAGAAAGAAATCACAATGCCGAGG  450

seq1  CTCTCTGGAGCCCTAGACTTGTGTCACCGCGGGTCAGAATCTATAGATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGGAGCCCTAGACTTGTGTCACCGCGGGTCAGAATCTATAGATTC  500

seq1  ATGTTTGGCGTTCTGATTCCCAGGCTTTTTAGCAGGAAGTTTAAGGCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGGCGTTCTGATTCCCAGGCTTTTTAGCAGGAAGTTTAAGGCTTG  550

seq1  AGACCATTTCAGCCTTTCTTAGTGACAGAGTTCTGCTTTTCAGTCAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATTTCAGCCTTTCTTAGTGACAGAGTTCTGCTTTTCAGTCAATAC  600

seq1  TGCCACCCTGTGGAGATGCTCAGGGCGGAGTAGCTTAGAAAGGACTCGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCCTGTGGAGATGCTCAGGGCGGAGTAGCTTAGAAAGGACTCGGT  650

seq1  GTTCCTTTGCAAGTGAAGCAGGATTCCTGTAGTTGTGGATTTTGTGGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTGCAAGTGAAGCAGGATTCCTGTAGTTGTGGATTTTGTGGTGT  700

seq1  CTCCTCTCAGAAATCTCCACAGTTCCATGGCCCAAGTCAGGCTTTGGCTT  750
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTCCTCTCAGAAATCTCCACAGTTCCATGGGCCAAGTCAGGCTTTGGCTT  750

seq1  GTGTGGAT-GGTGCATCTCATGACAGTGGAGACTGTCAC-TCCTCCCTGC  798
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  GTGTGGATGGGTGCATCTCATGACAGTGGAGACTGTCACTTCCTCCCTGC  800

seq1  TGTGTGCCAAGCTCTGTGTGGACCAGGCAGGTTAC-TCCCCTTGGGAGAT  847
      ||||||||||||||||||||||||||||||||||| || |||||||||||
seq2  TGTGTGCCAAGCTCTGTGTGGACCAGGCAGGTTACTTCTCCTTGGGAGAT  850

seq1  GGAGGTGTCACCATCCTTGACGTTTAT-GTCAGCGGACATTCCT-GTCCT  895
      |||||||||||||| |||||| ||||| |||||||||||||||| |||||
seq2  GGAGGTGTCACCAT-CTTGAC-TTTATGGTCAGCGGACATTCCTGGTCCT  898

seq1  AAC  898
      |||
seq2  AAC  901