BAC Information

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BAC

Clone NameB6Ng01-128L24
Chromosome11 (Build37)
Map Location 101,054,696 - 101,197,562
singlet/doubletdoublet
Overlap geneEzh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3
Upstream geneKrt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1
Downstream geneLOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128L24.bB6Ng01-128L24.g
ACCDH930518DH930519
length1,1401,069
definitionDH930518|Mus musculus domesticus DNA, BAC clone: B6Ng01-128L24, 5' end.DH930519|Mus musculus domesticus DNA, BAC clone: B6Ng01-128L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,054,696 - 101,055,829)(101,196,497 - 101,197,562)
sequence
gaattctgggctggttttctccaaattcccaataggatcaaatgggaatc
gaatgtagtcatgaaggcagacactcatctctctgcttttgacctgctat
tgcagcagtgagtttggggaaatggtggcctttaaatcatggttgtggga
aggcatttttaatgtagtcagtggaaaaggccgagtatgaaaggagaggc
ctaaaatgatggcagatagtcatcaagagtctccttggaaaacagtaact
cagccatgaaagcagctgagtgacaggtaagaatcacagccacgagcagt
tcattcaaccctcccacttcctaggctcctcaagactcactcacctttgg
cataacagttggggttcactgaatggtttgcaaagcgaattttgtttcct
ttccgggtagcatccactacaaaatctacatgacataaatcaaagaaaat
catgagtgtcccaggaaactatactttgggggggttcaaggtctagctct
gtggtccaggatggcccagaacttactgtaaccctcatgcccagtgctat
gacttcaggactgtaccactgtgcccatttttgtttgttgaagacaggat
ctcctgtagctcagactggcctcaaatatgtggtagctctcttgttctag
cctgtcaaatgctggggttataggcatcagaaatgtgcctagcttcaatc
ccccattctgtagctctactttaggatcagttaagaggtaacagaaacaa
tttaatctaatgggaacgtgaagcccagaatagtaacagaatatgtgaaa
gtgcagcctgcctcctcatgagacagcatcccctggagtcctccctctga
attttggatctcctcccacctattggttagggtaccttctcaagtgcaag
tgcccatgttcccattcctaacactagctcagaaatgaagcagagcccag
aggcttcccagctcagcttagcactctgctttaagagtcggtcgagtcag
tgctgattggaaccttgaatcatagccaagctgcttatggtgaagacttg
gcactggatcacctaggtcaggagggccaggccataccattgttgagggt
tgaagaagaagctttgacagtgtattttatccatagaact
gaattcccatcaccatcctggagggccatgtcacacccccgccatttcat
ggtacaacccacaccccacagccctgaacgggaaagagttctttcctggc
tttagttctccaaggggaaatgacatccttaccccaaccccagcatccac
agagacaattgaactgtttctaagtatccctccctcgctcctgctcagac
catgtgctgctcacttccccacgccctctgatcactcaccactcacctcc
cccaggtgaaggctttctctatgggactttcctggggcaagggctttcca
gcaaagctgagtatctggatgcggtagccccgcctatgaccccacttgtt
gctgtggttactggccaggtacaggtagcgtggggtggcgccccccagtg
ggaaggcagcctcctcctctgtctccagcagcttccgagtcacctgcagc
ctctgcatctggtactccggttgccaaggtacaatcgtggggacaaaagc
catatcctctgcccaggcccagttcttcagccctgtgtaaagtgtgtaag
ctctagtcattccaccactgtgggaatttctgccatctacctgactgcag
agtgagaccaaagactgtgttctttgcttccctcccagtccgaagatctc
cccaatcctttaggcaaaactattaacctataaattgtaaccaaacaacc
aaacaacccaaacaaaaagagtacctactgttcttccaccgggctgggat
catgccccagaacccacgctgggccactcacaggctctagcttgtgaact
ccagctccaggagggtccaacaccctctgttcccagtggcctgcacaact
gaatgcgcacattacatacagacacgcaagttaaaagtgaaaaaataaat
ccttctgtttttgttttgagacaaggtttgtttgtgtagcccttggcagt
cctgcaattcacactgtaaagcagcttgtcttcaactcagagatctgcct
gcctcttgcctctgatgcttgaatcaagtgtgtgtcatcacttgactggc
ccaaaatatattttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_101054696_101055829
seq2: B6Ng01-128L24.b_49_1188

seq1  GAATTCTGGGCTGGTTTTCTCCAAATTCCCAATAGGATCAAATGGGAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCTGGTTTTCTCCAAATTCCCAATAGGATCAAATGGGAATC  50

seq1  GAATGTAGTCATGAAGGCAGACACTCATCTCTCTGCTTTTGACCTGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAGTCATGAAGGCAGACACTCATCTCTCTGCTTTTGACCTGCTAT  100

seq1  TGCAGCAGTGAGTTTGGGGAAATGGTGGCCTTTAAATCATGGTTGTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAGTGAGTTTGGGGAAATGGTGGCCTTTAAATCATGGTTGTGGGA  150

seq1  AGGCATTTTTAATGTAGTCAGTGGAAAAGGCCGAGTATGAAAGGAGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTTTAATGTAGTCAGTGGAAAAGGCCGAGTATGAAAGGAGAGGC  200

seq1  CTAAAATGATGGCAGATAGTCATCAAGAGTCTCCTTGGAAAACAGTAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATGATGGCAGATAGTCATCAAGAGTCTCCTTGGAAAACAGTAACT  250

seq1  CAGCCATGAAAGCAGCTGAGTGACAGGTAAGAATCACAGCCACGAGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGAAAGCAGCTGAGTGACAGGTAAGAATCACAGCCACGAGCAGT  300

seq1  TCATTCAACCCTCCCACTTCCTAGGCTCCTCAAGACTCACTCACCTTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAACCCTCCCACTTCCTAGGCTCCTCAAGACTCACTCACCTTTGG  350

seq1  CATAACAGTTGGGGTTCACTGAATGGTTTGCAAAGCGAATTTTGTTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAGTTGGGGTTCACTGAATGGTTTGCAAAGCGAATTTTGTTTCCT  400

seq1  TTCCGGGTAGCATCCACTACAAAATCTACATGACATAAATCAAAGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGGTAGCATCCACTACAAAATCTACATGACATAAATCAAAGAAAAT  450

seq1  CATGAGTGTCCCAGGAAACTATACTTTGGGGGGGTTCAAGGTCTAGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTGTCCCAGGAAACTATACTTTGGGGGGGTTCAAGGTCTAGCTCT  500

seq1  GTGGTCCAGGATGGCCCAGAACTTACTGTAACCCTCATGCCCAGTGCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCAGGATGGCCCAGAACTTACTGTAACCCTCATGCCCAGTGCTAT  550

seq1  GACTTCAGGACTGTACCACTGTGCCCATTTTTGTTTGTTGAAGACAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGGACTGTACCACTGTGCCCATTTTTGTTTGTTGAAGACAGGAT  600

seq1  CTCCTGTAGCTCAGACTGGCCTCAAATATGTGGTAGCTCTCTTGTTCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTAGCTCAGACTGGCCTCAAATATGTGGTAGCTCTCTTGTTCTAG  650

seq1  CCTGTCAAATGCTGGGGTTATAGGCATCAGAAATGTGCCTAGCTTCAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCAAATGCTGGGGTTATAGGCATCAGAAATGTGCCTAGCTTCAATC  700

seq1  CCCCATTCTGTAGCTCTACTTTAGGATCAGTTAAGAGGTAACAGAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTCTGTAGCTCTACTTTAGGATCAGTTAAGAGGTAACAGAAACAA  750

seq1  TTTAATCTAATGGGAACGTGAAGCCCAGAATAGTAACAGAATATGTGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTAATGGGAACGTGAAGCCCAGAATAGTAACAGAATATGTGAAA  800

seq1  GTGCAGCCTGCCTCCTCATGAGACAGCATCCCCTGGAGTCCTCCCTCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCCTGCCTCCTCATGAGACAGCATCCCCTGGAGTCCTCCCTCTGA  850

seq1  ATTTTGGATCTCCTCCCACCTATTGGTTAGGGTACCTTCTCAAGTGCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGATCTCCTCCCACCTATTGGTTAGGGTACCTTCTCAAGTGCAAG  900

seq1  TGCCCATGTTCCCATTCCTAACAC-AGCTCAGAAATGAAGCAGAGCCCAG  949
      |||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  TGCCCATGTTCCCATTCCTAACACTAGCTCAGAAATGAAGCAGAGCCCA-  949

seq1  GAGGCTTCCCAGCTCAGCTTAGCACTCTGCTTTAAGAGTCGGTCGAGTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTCCCAGCTCAGCTTAGCACTCTGCTTTAAGAGTCGGTCGAGTCA  999

seq1  GTGCTGATTGGAACC-TGGATCATAGCCAAGGCTGCTTAGTGTGAAGACT  1048
      ||||||||||||||| || ||||||||||| ||||||||  |||||||||
seq2  GTGCTGATTGGAACCTTGAATCATAGCCAA-GCTGCTTATGGTGAAGACT  1048

seq1  T-GCACATGATCACCTAGGTACAGAAGGCCATGCCATACCATTGTTGA-G  1096
      | ||||  ||||||||||||   || ||||| |||||||||||||||| |
seq2  TGGCACTGGATCACCTAGGTCAGGAGGGCCAGGCCATACCATTGTTGAGG  1098

seq1  GTTGAAGAGGAAGC-TGGACA-TGTA-TTTAT-CATAGACCT  1134
      |||||||| ||||| | |||| |||| ||||| |||||| ||
seq2  GTTGAAGAAGAAGCTTTGACAGTGTATTTTATCCATAGAACT  1140

seq1: chr11_101196497_101197562
seq2: B6Ng01-128L24.g_70_1138 (reverse)

seq1  AAAAAAAAATTTTATTTTTGGCCAGAC-AGTGATGACACACACCTTTGAT  49
       |||||||| | |||||| |||||| | |||||||||||||||  |||||
seq2  -AAAAAAAAATATATTTTGGGCCAGTCAAGTGATGACACACAC--TTGAT  47

seq1  TCCAGCACTCAGGAGGC-AGAGGCAGGCAGATCTCTGAGTTTGAGGCCAG  98
      || |||| ||| ||||| ||||||||||||||||||||| |||| | || 
seq2  TCAAGCA-TCA-GAGGCAAGAGGCAGGCAGATCTCTGAG-TTGAAGACAA  94

seq1  CCTGCTTTACAGTGTGAATTGCAGGACTGCC-AGGGCTACACAAACAAAC  147
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTGCTTTACAGTGTGAATTGCAGGACTGCCAAGGGCTACACAAACAAAC  144

seq1  CCTGTCTCAAAACAAAAACAGAAGGATTTA-TTTTTCACTTTT-ACTTGC  195
      | |||||||||||||||||||||||||||| |||||||||||| ||||||
seq2  CTTGTCTCAAAACAAAAACAGAAGGATTTATTTTTTCACTTTTAACTTGC  194

seq1  GTGTCTGTATGT-ATGTGCGCA-TCAGTTGTGCAGGCCACTGGGAACAGA  243
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  GTGTCTGTATGTAATGTGCGCATTCAGTTGTGCAGGCCACTGGGAACAGA  244

seq1  -GGTGTTGGACCCTCCTGGAGCTGGAGTTCACAAGCTAGAGCCTGTGAGT  292
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTGGACCCTCCTGGAGCTGGAGTTCACAAGCTAGAGCCTGTGAGT  294

seq1  GGCCCAGCGTGGGTTCTGGGGCATGATCCCAGCCCGGTGGAAGAACAGTA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCGTGGGTTCTGGGGCATGATCCCAGCCCGGTGGAAGAACAGTA  344

seq1  GGTACTCTTTTTGTTT-GGTTGTTTGGTTGTTTGGTTACAATTTATAGGT  391
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGTACTCTTTTTGTTTGGGTTGTTTGGTTGTTTGGTTACAATTTATAGGT  394

seq1  TAATAGTTTTGCCTAAAGGATTGGGGAGATCTTCGGACTGGGAGGGAAGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTTTTGCCTAAAGGATTGGGGAGATCTTCGGACTGGGAGGGAAGC  444

seq1  AAAGAACACAGTCTTTGGTCTCACTCTGCAGTCAGGTAGATGGCAGAAAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACACAGTCTTTGGTCTCACTCTGCAGTCAGGTAGATGGCAGAAAT  494

seq1  TCCCACAGTGGTGGAATGACTAGAGCTTACACACTTTACACAGGGCTGAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGTGGTGGAATGACTAGAGCTTACACACTTTACACAGGGCTGAA  544

seq1  GAACTGGGCCTGGGCAGAGGATATGGCTTTTGTCCCCACGATTGTACCTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGGCCTGGGCAGAGGATATGGCTTTTGTCCCCACGATTGTACCTT  594

seq1  GGCAACCGGAGTACCAGATGCAGAGGCTGCAGGTGACTCGGAAGCTGCTG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACCGGAGTACCAGATGCAGAGGCTGCAGGTGACTCGGAAGCTGCTG  644

seq1  GAGACAGAGGAGGAGGCTGCCTTCCCACTGGGGGGCGCCACCCCACGCTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGGAGGAGGCTGCCTTCCCACTGGGGGGCGCCACCCCACGCTA  694

seq1  CCTGTACCTGGCCAGTAACCACAGCAACAAGTGGGGTCATAGGCGGGGCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACCTGGCCAGTAACCACAGCAACAAGTGGGGTCATAGGCGGGGCT  744

seq1  ACCGCATCCAGATACTCAGCTTTGCTGGAAAGCCCTTGCCCCAGGAAAGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCATCCAGATACTCAGCTTTGCTGGAAAGCCCTTGCCCCAGGAAAGT  794

seq1  CCCATAGAGAAAGCCTTCACCTGGGGGAGGTGAGTGGTGAGTGATCAGAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGAGAAAGCCTTCACCTGGGGGAGGTGAGTGGTGAGTGATCAGAG  844

seq1  GGCGTGGGGAAGTGAGCAGCACATGGTCTGAGCAGGAGCGAGGGAGGGAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGGGAAGTGAGCAGCACATGGTCTGAGCAGGAGCGAGGGAGGGAT  894

seq1  ACTTAGAAACAGTTCAATTGTCTCTGTGGATGCTGGGGTTGGGGTAAGGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAAACAGTTCAATTGTCTCTGTGGATGCTGGGGTTGGGGTAAGGA  944

seq1  TGTCATTTCCCCTTGGAGAACTAAAGCCAGGAAAGAACTCTTTCCCGTTC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTCCCCTTGGAGAACTAAAGCCAGGAAAGAACTCTTTCCCGTTC  994

seq1  AGGGCTGTGGGGTGTGGGTTGTACCATGAAATGGCGGGGGTGTGACATGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGTGGGGTGTGGGTTGTACCATGAAATGGCGGGGGTGTGACATGG  1044

seq1  CCCTCCAGGATGGTGATGGGAATTC  1066
      |||||||||||||||||||||||||
seq2  CCCTCCAGGATGGTGATGGGAATTC  1069