BAC Information

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BAC

Clone NameB6Ng01-128M09
Chromosome11 (Build37)
Map Location 54,731,734 - 54,857,425
singlet/doubletdoublet
Overlap geneTnip1, LOC667826, Anxa6
Upstream geneSlc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3
Downstream geneCcdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1, Nmur2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128M09.bB6Ng01-128M09.g
ACCDH930535DH930536
length1,162858
definitionDH930535|Mus musculus domesticus DNA, BAC clone: B6Ng01-128M09, 5' end.DH930536|Mus musculus domesticus DNA, BAC clone: B6Ng01-128M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,731,734 - 54,732,934)(54,856,565 - 54,857,425)
sequence
gaattctgatgccctcttctggagtgtctgaagacagctacagtgtactt
acatataataaataaataaatctttgagaaaggggttactggcttacaat
tataaagtacaaacatgggctggagagatggctcagaggttaagaacagt
gctcttctagaggtcctgagttcaattcccagcaactacatggtggctca
caaccatctgcaatgagagctggtgccctcttctggccgcaggcatacat
gcaggcagaacactgtataagtaacaatgataacaacaataatgacgatg
tccatatagaatggagagcagagctggcacactggtcagctgctcctggg
aatgcatcagctctcgggcctcacctgctgtttcagcaactcattctgtg
tcactagttcctgcttcctcagatggcccccaacgccttctggactccca
aaagctgcaggcggagatgatggagaggcctggatgctgagggcctcctc
cagggcctggaatcaggaaagaagagacagaaccatcagcaggcgaccct
acaagtcagacccatctgaagaccactcacagagagcctctttccatcaa
tactgtaaccccagcagcagcagtccttaaccaacctcactcattaccgc
tgcactgaatgggccactgcattgaagtctcttcatcatcctgcaggata
aaggacctcatgcccattttactcacttgaaaactgagggccagatacta
tgactgagtgtcttggtttgtgtttgtgtttgttttgtcaacttggcaca
agccagaatcactttgagaagagaaacctcaattgagaaaatgcctcaac
caaactggccaacaggcaagcctttgaggcatgttcttgcttagcgcctg
agatggcgtgctcatctttctgagggtggtgccacccccctcagctggta
gtctgagtgtgtaagaaagctgagtagccatgggagcagtgtgtagcagc
agattctttcatgctgctgctgcagtctgctgcaggttctgcccttcctg
ctcctgcctcctcagtgatgactgggcgaacaagattactgagcgcgaac
ctaaggaaactgctgaggtcaccagctgtgagcaacacaggatgcagcag
ctgttctaccct
gaattctcacctcccagaaagagaccagacctctactcagtaaacacaaa
gggcaatccatcgaggcatggtggggcccacctgcacttgggaggcagga
gtaggaacgtcaggattcattgcttatattcagtctcctcattaccgaga
gctacttagtgctgggtggctggtgccactgtgttctcagaaaaaaaaag
tcagttaacaaatgctctagggtcactcagtgtcttagtaactgttctgt
tgctgtgaagagacacagtacccaagacagcaatttttcccccaagacag
ggtttctctgtatagccttggacctccaacacaaagatccacctgccttt
gtctcctgattgctgagattaaaggcatgaacctccactgccaggccaga
ggcaactcttttatttatatataatttggagcttgcttacagttttagag
ggttttagagttttagggggttagtccatgaccagcatagtgggtagtag
ctgagagctctacattctgattcacaggcagcaggcagagggggagggga
gggactggacctggcatgggcttttgaaactacccccagagatacacctt
tctctaacaaggccatgccccctaatcctttcccaaacaatttccactaa
ctagggaccaagcatttcaaacatattgagcctatgtggtggcattctca
ttcacactacacactttgctagactgtgtggaaccagaaaccccaagttt
ttctgttcttttttacttcaaagatactacccctcgacacccccacccct
tgtttttgagacagggtctcactcgtacacaatagctcaactcccgaagg
taaggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_54731734_54732934
seq2: B6Ng01-128M09.b_49_1210

seq1  GAATTCTGATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTT  50

seq1  ACATATAATAAATAAATAAATCTTTGAGAAAGGGGTTACTGGCTTACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAATAAATAAATAAATCTTTGAGAAAGGGGTTACTGGCTTACAAT  100

seq1  TATAAAGTACAAACATGGGCTGGAGAGATGGCTCAGAGGTTAAGAACAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTACAAACATGGGCTGGAGAGATGGCTCAGAGGTTAAGAACAGT  150

seq1  GCTCTTCTAGAGGTCCTGAGTTCAATTCCCAGCAACTACATGGTGGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCTAGAGGTCCTGAGTTCAATTCCCAGCAACTACATGGTGGCTCA  200

seq1  CAACCATCTGCAATGAGAGCTGGTGCCCTCTTCTGGCCGCAGGCATACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATCTGCAATGAGAGCTGGTGCCCTCTTCTGGCCGCAGGCATACAT  250

seq1  GCAGGCAGAACACTGTATAAGTAACAATGATAACAACAATAATGACGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGAACACTGTATAAGTAACAATGATAACAACAATAATGACGATG  300

seq1  TCCATATAGAATGGAGAGCAGAGCTGGCACACTGGTCAGCTGCTCCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATAGAATGGAGAGCAGAGCTGGCACACTGGTCAGCTGCTCCTGGG  350

seq1  AATGCATCAGCTCTCGGGCCTCACCTGCTGTTTCAGCAACTCATTCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATCAGCTCTCGGGCCTCACCTGCTGTTTCAGCAACTCATTCTGTG  400

seq1  TCACTAGTTCCTGCTTCCTCAGATGGCCCCCAACGCCTTCTGGACTCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGTTCCTGCTTCCTCAGATGGCCCCCAACGCCTTCTGGACTCCCA  450

seq1  AAAGCTGCAGGCGGAGATGATGGAGAGGCCTGGATGCTGAGGGCCTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGCAGGCGGAGATGATGGAGAGGCCTGGATGCTGAGGGCCTCCTC  500

seq1  CAGGGCCTGGAATCAGGAAAGAAGAGACAGAACCATCAGCAGGCGACCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCTGGAATCAGGAAAGAAGAGACAGAACCATCAGCAGGCGACCCT  550

seq1  ACAAGTCAGACCCATCTGAAGACCACTCACAGAGAGCCTCTTTCCATCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTCAGACCCATCTGAAGACCACTCACAGAGAGCCTCTTTCCATCAA  600

seq1  TACTGTAACCCCAGCAGCAGCAGTCCTTAACCAACCTCACTCATTACCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAACCCCAGCAGCAGCAGTCCTTAACCAACCTCACTCATTACCGC  650

seq1  TGCACTGAATGGGCCACTGCATTGAAGTCTCTTCATCATCCTGCAGGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGAATGGGCCACTGCATTGAAGTCTCTTCATCATCCTGCAGGATA  700

seq1  AAGGACCTCATGCCCATTTTACTCACTTGAAAACTGAGGGCCAGATACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCTCATGCCCATTTTACTCACTTGAAAACTGAGGGCCAGATACTA  750

seq1  TGACTGAGTGTCTTGGTTTGTGTTTGTGTTTGTTTTGTCAACTTGGCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAGTGTCTTGGTTTGTGTTTGTGTTTGTTTTGTCAACTTGGCACA  800

seq1  AGCCAGAATCACTTTGAGAAGAGAAACCTCAATTGAGAAAATGCCTCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAATCACTTTGAGAAGAGAAACCTCAATTGAGAAAATGCCTCAAC  850

seq1  CAAACTGGCCAACAGGCAAGCCTTTGAGGCATGTTCTTGCTTAGCGCCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGGCCAACAGGCAAGCCTTTGAGGCATGTTCTTGCTTAGCGCCTG  900

seq1  AGATGGCGTGCTCATCTTTCTGAGGGTGGTGCCACCCCCCTCAGCTGGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCGTGCTCATCTTTCTGAGGGTGGTGCCACCCCCCTCAGCTGGTA  950

seq1  GTCCTGGAGTGTGTAAGAAAGGCTGAGGTAGCCATGGGAAGCAAGTGTGT  1000
      |||   |||||||||||||| ||||| ||||||||||| ||| |||||||
seq2  GTC--TGAGTGTGTAAGAAA-GCTGA-GTAGCCATGGG-AGC-AGTGTGT  994

seq1  AAGCAAGCAGGATTCTTTCATGGCTGCTGCTGCAGTTCCTGCCTGCAGGT  1050
       ||| |||| ||||||||||| ||||||||||||||  ||| ||||||||
seq2  -AGC-AGCA-GATTCTTTCAT-GCTGCTGCTGCAGT--CTG-CTGCAGGT  1037

seq1  TCCTGCCCTTCCCTGCCTCCTGCCTCCCTCAGTGATGGACTGGGGCCGAA  1100
      | |||||||| |||| ||||||||| |||||||||| |||||||  ||||
seq2  T-CTGCCCTT-CCTG-CTCCTGCCT-CCTCAGTGAT-GACTGGG--CGAA  1080

seq1  ACAAAGATTTACTGAAGCAGCAGAAACACTAAAGGAGACTGCTGAGGTCA  1150
         |||| ||||||    |||   ||| || ||||| |||||||||||||
seq2  --CAAGA-TTACTG----AGCGCGAAC-CT-AAGGAAACTGCTGAGGTCA  1121

seq1  CACAGCTAGTGAGCAAACACAAGGATGCCAGCCCAGCTGTGTTCTTACCC  1200
      | ||||| |||||| ||||| |||||| |||  ||||  ||||| |||||
seq2  C-CAGCT-GTGAGC-AACAC-AGGATG-CAG--CAGC--TGTTC-TACCC  1161

seq1  T  1201
      |
seq2  T  1162

seq1: chr11_54856565_54857425
seq2: B6Ng01-128M09.g_67_924 (reverse)

seq1  CATCCTTACCTCAGTGAGTTTGAGCTTATGGTGTACGTGTGAGACCCTGT  50
      || ||||||||  | ||| |||||| ||| ||||||| ||||||||||||
seq2  CAACCTTACCTTCGGGAG-TTGAGC-TATTGTGTACGAGTGAGACCCTGT  48

seq1  CTCAAAAACAAGGGGGTGGGGGTGTCGAGGGGTAGTAATCTTTGAAGTAA  100
      ||||||||||| |||||||||||||||||||||||| ||||||||||| |
seq2  CTCAAAAACAA-GGGGTGGGGGTGTCGAGGGGTAGT-ATCTTTGAAGT-A  95

seq1  AAAAAGAACAGAAAAACTCTGGGTTTCTGGTTCCACCACAGTCTAGCAAA  150
      ||||||||||||||||||  ||||||||||||||| ||||||||||||||
seq2  AAAAAGAACAGAAAAACTTGGGGTTTCTGGTTCCA-CACAGTCTAGCAAA  144

seq1  GTGTGTTAGTGTGAATGAGAATGCCACCACATAGGCTCAATATGTTTG-A  199
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  GTGTG-TAGTGTGAATGAGAATGCCACCACATAGGCTCAATATGTTTGAA  193

seq1  ATGCTTGGTCCCTAGTTAGTGG-AATTGTTTGGG-AAGGATTAGGGGGCA  247
      |||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  ATGCTTGGTCCCTAGTTAGTGGAAATTGTTTGGGAAAGGATTAGGGGGCA  243

seq1  TGGCCTTGTTAGAG-AAGGTGTATCTCTGGGGGTAGTTTCAAAAGCCCAT  296
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGTTAGAGAAAGGTGTATCTCTGGGGGTAGTTTCAAAAGCCCAT  293

seq1  GCCAGGTCCAGTCCCTCCCCTCCCCCTCTGCCTGCTGCCTGTGAATCAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTCCAGTCCCTCCCCTCCCCCTCTGCCTGCTGCCTGTGAATCAGA  343

seq1  ATGTAGAGCTCTCAGCTACTACCCACTATGCTGGTCATGGACTAACCCCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAGCTCTCAGCTACTACCCACTATGCTGGTCATGGACTAACCCCC  393

seq1  TAAAACTCTAAAACCCTCTAAAACTGTAAGCAAGCTCCAAATTATATATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCTAAAACCCTCTAAAACTGTAAGCAAGCTCCAAATTATATATA  443

seq1  AATAAAAGAGTTGCCTCTGGCCTGGCAGTGGAGGTTCATGCCTTTAATCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGAGTTGCCTCTGGCCTGGCAGTGGAGGTTCATGCCTTTAATCT  493

seq1  CAGCAATCAGGAGACAAAGGCAGGTGGATCTTTGTGTTGGAGGTCCAAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATCAGGAGACAAAGGCAGGTGGATCTTTGTGTTGGAGGTCCAAGG  543

seq1  CTATACAGAGAAACCCTGTCTTGGGGGAAAAATTGCTGTCTTGGGTACTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAGAGAAACCCTGTCTTGGGGGAAAAATTGCTGTCTTGGGTACTG  593

seq1  TGTCTCTTCACAGCAACAGAACAGTTACTAAGACACTGAGTGACCCTAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTCACAGCAACAGAACAGTTACTAAGACACTGAGTGACCCTAGA  643

seq1  GCATTTGTTAACTGACTTTTTTTTTCTGAGAACACAGTGGCACCAGCCAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTTAACTGACTTTTTTTTTCTGAGAACACAGTGGCACCAGCCAC  693

seq1  CCAGCACTAAGTAGCTCTCGGTAATGAGGAGACTGAATATAAGCAATGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTAAGTAGCTCTCGGTAATGAGGAGACTGAATATAAGCAATGAA  743

seq1  TCCTGACGTTCCTACTCCTGCCTCCCAAGTGCAGGTGGGCCCCACCATGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACGTTCCTACTCCTGCCTCCCAAGTGCAGGTGGGCCCCACCATGC  793

seq1  CTCGATGGATTGCCCTTTGTGTTTACTGAGTAGAGGTCTGGTCTCTTTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGATGGATTGCCCTTTGTGTTTACTGAGTAGAGGTCTGGTCTCTTTCT  843

seq1  GGGAGGTGAGAATTC  861
      |||||||||||||||
seq2  GGGAGGTGAGAATTC  858