BAC Information

Click to search

BAC

Clone NameB6Ng01-128M10
Chromosome11 (Build37)
Map Location 35,080,384 - 35,210,633
singlet/doubletdoublet
Overlap geneSlit3, LOC100039006
Upstream geneFoxi1, Dock2, EG574403, Dock2, Ccdc99, LOC100038976
Downstream genePank3, LOC666733, AI595406, Rars, Wwc1, LOC636532, Odz2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128M10.bB6Ng01-128M10.g
ACCDH930537DH930538
length4281,135
definitionDH930537|Mus musculus domesticus DNA, BAC clone: B6Ng01-128M10, 5' end.DH930538|Mus musculus domesticus DNA, BAC clone: B6Ng01-128M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,080,384 - 35,080,817)(35,209,494 - 35,210,633)
sequence
tcttctcctgaagattttaggaccatatatatcgttgagctaggaaagtt
atgactaggataagatgatgtgtagctgttgaggaggggaattaatcagg
gtcattagatgggttgctctctctctctctctctctctctctctctctct
ctctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcgtgtt
cccacatacctgcacgtgtgcatgagatgggcatcgaagcacctgtgcct
acaggctcactgtggctttctgtgggctatctatcttaaaagatgtttat
gttttcagaagtctctctttatcatcatattgttttgttagattatataa
gaggtaatggcaggcattgttttttcttttaccttcagaaaaatgacttg
agcagctcataacatttagcctgacatt
gaattcataccaggatcgggatgagctgagctcagatgccccttgatggg
atggagctgaagagagaggcatcctcccgctgagaaccatgactctaatt
gaaggttaatcataccatttcagtgtcagacttgagctgttctgcctagt
tgtcccagaactgggtggggattccgaaacacctctaggctttgctttat
agaaaattagttgagaacccacaaaacctgtaaaagctctgcctatgacc
attgttgaattggcctattctcctctcacgcaaacgcttttgcctgcaat
tcagactcataaaaagagaaaatgaaagagtcacagagactactgcagca
gatactgaggtgagacgtggcacctgatgtcagaactaggaatcggagct
aagcatggcaaattctagtgtgcatggggcacggagctcacaaaagaatg
gcaggaaactgccaggtgcaaacagccatgaacagacagacctgtggtta
ctaccactctgagcatccaagaagtacttgataaatatagataggatgag
ccgcataatcacagtcccaagaaacagctcttgaagccaagactttattt
catgttggagctttaggctctaaaccactcttgagtaatgtctcctgcca
atctgtcacttgagttgcttcggaaacctttccttaaaggaattccacac
ccataagaagtttattactctgtcatcccatttgttaggctagttgtgat
acgtcagaggaacgtaaataatcccattcaattgaaaacaaaaaacaaaa
accaaagctttcttgcaagcattcagaacttttggcatctcaagctccgt
ctgcatttttccaaatgctgggctgatttttttcatgactgtatgttgaa
aaagccatgaggggcggggtgcgcaagactctcagatgacccttcaggag
aaacctgtctacatctggctctcctctgacactgctgtatcgaacctgtt
tctttgtcttatcttggaaaatgtacgtttcctcgaacgtcgccaactat
tcatctgtagacacctttccactccaccacttgattaaatgactcggctg
ctgtatggaacttttccggtcagccctcccaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_35080384_35080817
seq2: B6Ng01-128M10.b_50_483

seq1  GAATTCTCTTCTCCTGAAGATTTTAGGACCATATATATCGTTGAGCTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTCCTGAAGATTTTAGGACCATATATATCGTTGAGCTAGG  50

seq1  AAAGTTATGACTAGGATAAGATGATGTGTAGCTGTTGAGGAGGGGAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATGACTAGGATAAGATGATGTGTAGCTGTTGAGGAGGGGAATTA  100

seq1  ATCAGGGTCATTAGATGGGTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGTCATTAGATGGGTTGCTCTCTCTCTCTCTCTCTCTCTCTCTCT  150

seq1  CTCTCTCTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTT  200

seq1  CGTGTTCCCACATACCTGCACGTGTGCATGAGATGGGCATCGAAGCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTCCCACATACCTGCACGTGTGCATGAGATGGGCATCGAAGCACCT  250

seq1  GTGCCTACAGGCTCACTGTGGCTTTCTGTGGGCTATCTATCTTAAAAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTACAGGCTCACTGTGGCTTTCTGTGGGCTATCTATCTTAAAAGAT  300

seq1  GTTTATGTTTTCAGAAGTCTCTCTTTATCATCATATTGATTTGTGAGAGG  350
      |||||||||||||||||||||||||||||||||||||| ||||| |||  
seq2  GTTTATGTTTTCAGAAGTCTCTCTTTATCATCATATTGTTTTGTTAGATT  350

seq1  AAATAAGAGGTAATGGCAGGCATTGGTTTTTCTTTAACCTTCAGAAGAAT  400
      | ||||||||||||||||||||||| ||||||||| |||||||||| |||
seq2  ATATAAGAGGTAATGGCAGGCATTGTTTTTTCTTTTACCTTCAGAAAAAT  400

seq1  GACCTGAGCAGCTCATAATATTGAGCCTGACATT  434
      ||| |||||||||||||| ||| |||||||||||
seq2  GACTTGAGCAGCTCATAACATTTAGCCTGACATT  434

seq1: chr11_35209494_35210633
seq2: B6Ng01-128M10.g_70_1204 (reverse)

seq1  TTGGTG---AGGCTGAACTGGAAAAGTTCATTACAAGCAAACCGAGTCAT  47
      ||||||    ||||| || ||||||||||  ||| ||| | |||||||||
seq2  TTGGTGGGAGGGCTG-ACCGGAAAAGTTCCATAC-AGC-AGCCGAGTCAT  47

seq1  TTATTCAAGTGGTTGAGTTGGGAAAGGTGTCTACAGATGAATATGTGGCG  97
      ||| ||||||||| ||||  |||||||||||||||||||||||  |||||
seq2  TTAATCAAGTGGTGGAGT--GGAAAGGTGTCTACAGATGAATAGTTGGCG  95

seq1  ACGGTTCGA-GAAACGTACATTTTCCCAGGATAAGACAAAGGAAACAGGT  146
      || |||||| |||||||||||||| ||| ||||||||||| |||||||||
seq2  AC-GTTCGAGGAAACGTACATTTT-CCAAGATAAGACAAA-GAAACAGGT  142

seq1  TCGATACAGCAGGTGTCAGAGGAGAGCCAGATGTAGACAGGTTTCTCCTG  196
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCGATACAGCA-GTGTCAGAGGAGAGCCAGATGTAGACAGGTTTCTCCTG  191

seq1  AAGGGTCATCTGAGAGTCTTGCGCACCCCGCCCCTCATGGCTTTTTCAAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCATCTGAGAGTCTTGCGCACCCCGCCCCTCATGGCTTTTTCAAC  241

seq1  ATACAGTCATGAAAAAAATCAGCCCAGCATTTGGAAAAATGCAGACGGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTCATGAAAAAAATCAGCCCAGCATTTGGAAAAATGCAGACGGAG  291

seq1  CTTGAGATGCCAAAAGTTCTGAATGCTTGCAAGAAAGCTTTGGTTTTTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGATGCCAAAAGTTCTGAATGCTTGCAAGAAAGCTTTGGTTTTTGT  341

seq1  TTTTTGTTTTCAATTGAATGGGATTATTTACGTTCCTCTGACGTATCACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTCAATTGAATGGGATTATTTACGTTCCTCTGACGTATCACA  391

seq1  ACTAGCCTAACAAATGGGATGACAGAGTAATAAACTTCTTATGGGTGTGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCCTAACAAATGGGATGACAGAGTAATAAACTTCTTATGGGTGTGG  441

seq1  AATTCCTTTAAGGAAAGGTTTCCGAAGCAACTCAAGTGACAGATTGGCAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTTTAAGGAAAGGTTTCCGAAGCAACTCAAGTGACAGATTGGCAG  491

seq1  GAGACATTACTCAAGAGTGGTTTAGAGCCTAAAGCTCCAACATGAAATAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTACTCAAGAGTGGTTTAGAGCCTAAAGCTCCAACATGAAATAA  541

seq1  AGTCTTGGCTTCAAGAGCTGTTTCTTGGGACTGTGATTATGCGGCTCATC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGGCTTCAAGAGCTGTTTCTTGGGACTGTGATTATGCGGCTCATC  591

seq1  CTATCTATATTTATCAAGTACTTCTTGGATGCTCAGAGTGGTAGTAACCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATATTTATCAAGTACTTCTTGGATGCTCAGAGTGGTAGTAACCA  641

seq1  CAGGTCTGTCTGTTCATGGCTGTTTGCACCTGGCAGTTTCCTGCCATTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGTCTGTTCATGGCTGTTTGCACCTGGCAGTTTCCTGCCATTCT  691

seq1  TTTGTGAGCTCCGTGCCCCATGCACACTAGAATTTGCCATGCTTAGCTCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAGCTCCGTGCCCCATGCACACTAGAATTTGCCATGCTTAGCTCC  741

seq1  GATTCCTAGTTCTGACATCAGGTGCCACGTCTCACCTCAGTATCTGCTGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTAGTTCTGACATCAGGTGCCACGTCTCACCTCAGTATCTGCTGC  791

seq1  AGTAGTCTCTGTGACTCTTTCATTTTCTCTTTTTATGAGTCTGAATTGCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCTCTGTGACTCTTTCATTTTCTCTTTTTATGAGTCTGAATTGCA  841

seq1  GGCAAAAGCGTTTGCGTGAGAGGAGAATAGGCCAATTCAACAATGGTCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGCGTTTGCGTGAGAGGAGAATAGGCCAATTCAACAATGGTCAT  891

seq1  AGGCAGAGCTTTTACAGGTTTTGTGGGTTCTCAACTAATTTTCTATAAAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGCTTTTACAGGTTTTGTGGGTTCTCAACTAATTTTCTATAAAG  941

seq1  CAAAGCCTAGAGGTGTTTCGGAATCCCCACCCAGTTCTGGGACAACTAGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCTAGAGGTGTTTCGGAATCCCCACCCAGTTCTGGGACAACTAGG  991

seq1  CAGAACAGCTCAAGTCTGACACTGAAATGGTATGATTAACCTTCAATTAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGCTCAAGTCTGACACTGAAATGGTATGATTAACCTTCAATTAG  1041

seq1  AGTCATGGTTCTCAGCGGGAGGATGCCTCTCTCTTCAGCTCCATCCCATC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGGTTCTCAGCGGGAGGATGCCTCTCTCTTCAGCTCCATCCCATC  1091

seq1  AAGGGGCATCTGAGCTCAGCTCATCCCGATCCTGGTATGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCATCTGAGCTCAGCTCATCCCGATCCTGGTATGAATTC  1135