BAC Information

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BAC

Clone NameB6Ng01-129B08
Chromosome11 (Build37)
Map Location 17,928,899 - 18,131,602
singlet/doubletdoublet
Overlap geneLOC627696
Upstream gene1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748, Etaa1, LOC327871
Downstream geneLOC627716, LOC665796, Meis1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129B08.bB6Ng01-129B08.g
ACCDH930764DH930765
length1,155988
definitionDH930764|Mus musculus domesticus DNA, BAC clone: B6Ng01-129B08, 5' end.DH930765|Mus musculus domesticus DNA, BAC clone: B6Ng01-129B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,928,899 - 17,930,067)(18,131,056 - 18,131,602)
sequence
gaattctatgaactgttggttgctttggttctcctttcctcgatttgctg
ggctttgttcaggtagttgggcaataactaaggtcctcctagttctgcgt
ctcactcttggttgacacttaccttattttgctttctattgtcatcaaac
attatgaacaaagcaagcggggaaggagagggtttatttcatcattcctc
atcatctattacaaggggtattcatggcaggaaatcagcaggaatctgga
ggtaagaaggaagcagaggtaacctagggatgctgcttcactgtcttgct
ccctgtggtttagtcagcctgttatcttatacaacacaggaacacctggc
caggggtagcaccacctatggtggtctgggtcctcccaaaccacctaata
ataaagaaaatgttacacagacttgcctacaggccaatctgatgaggtac
tccctcaactgaagtgccttctggattactgtaacttgtgtcaaacggac
aaacatgtgaataaacaaaaccccaaaatacaaataaaacagcaacaaaa
attaaaaacaaacccacaacccacaaaccaaactcaggacaaagctaaaa
tctctttatatagatgtgtatgaaacattacatatggaacatgtcaaaag
ttgtaaaaaattttatttaaaccacagtgtttattttccacaacataaag
gtgaaatatttttgcatttcccaatgcatttctcagtaataacacagcca
ctaaaaatattttttgttcatgtagagcagtgttaatatagcttaacaga
agaaaaggcacattatctcccagaagaaaggaagaaagccttatttgtta
ttaaaacggagctgaaaatacagcaattattatactgccctttccctaat
ttgacttaaattagtgatttggatgttattagaggttatgaaataataca
gtaggtgcacataggagacaaaatatttgcttgctcatatgtacgtttat
gacattaaccttttctctcatgatctatataaaacaaccatttgaaagca
tttcatggaaatacttcagaatgtgaattgaaatttatcttcagaggtca
tgttggtttctttttttttatcccgaaagatggttgaggagtactggaaa
ttaaa
gaattccccccaaagcacaaagagttgaataatataaggaagtaactata
gaatattaatgtgggggtcagtaaagaaaacgaggccatggagaaagaag
aaacaggaaaagcagaaataaaaaattcaataagtaaaataaagaaactg
tcatcaacagaatgaagtggggagaagggagtctgaaaaagtaaaaatga
atgtagaagaactagaacatcagacaatgacagtgacaaattaatatgaa
agtgtgaacatcattttcaaaatctaggtgttctagtatgttttcctctt
tctgtaaaaaaataccatgagcaaagcaacttgagaagcaaagggtttgt
ttggattatacttctaggtcacaaacctgtcactgaagaaagacatggta
gggatacaaacagaaacagaatctgagaccatggaggattactgtttaca
ggcttgctcctggctcatgtctagataactttattttacatccacctgct
tatgaatggggctgcctacggtgagctggtctcccctccatctatcaaga
taatttctcataggccaatctgatctttgtaatcccacaaactaccttaa
ccaactctggaatgtttcaagttcacaatgtgtcaactatgctggttggt
tttattgtcaaattgtcaaaattcacatcatctaaatgggaagcctaact
gatgaattgccctgattgccttaattaatgtgggaagtgccaaatggaag
tggcatgttctagtggcagctcagagtaaacgaacatggtaagaaaaacc
cattatttggtctctttgtcctccaaccaatgacttgatatacgttcttg
ttattaccaactttttcactgatataggaccagcttttacaggtttcaat
cacagattaaggaccaatagctccagaactctcagttttctacatctgtt
tgggacagctgatgtaccagtctgtaactgagcagcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_17928899_17930067
seq2: B6Ng01-129B08.b_46_1200

seq1  GAATTCTATGAACTGTTGGTTGCTTTGGTTCTCCTTTCCTCGATTTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAACTGTTGGTTGCTTTGGTTCTCCTTTCCTCGATTTGCTG  50

seq1  GGCTTTGTTCAGGTAGTTGGGCAATAACTAAGGTCCTCCTAGTTCTGCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGTTCAGGTAGTTGGGCAATAACTAAGGTCCTCCTAGTTCTGCGT  100

seq1  CTCACTCTTGGTTGACACTTACCTTATTTTGCTTTCTATTGTCATCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTTGGTTGACACTTACCTTATTTTGCTTTCTATTGTCATCAAAC  150

seq1  ATTATGAACAAAGCAAGCGGGGAAGGAGAGGGTTTATTTCATCATTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAACAAAGCAAGCGGGGAAGGAGAGGGTTTATTTCATCATTCCTC  200

seq1  ATCATCTATTACAAGGGGTATTCATGGCAGGAAATCAGCAGGAATCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTATTACAAGGGGTATTCATGGCAGGAAATCAGCAGGAATCTGGA  250

seq1  GGTAAGAAGGAAGCAGAGGTAACCTAGGGATGCTGCTTCACTGTCTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAAGGAAGCAGAGGTAACCTAGGGATGCTGCTTCACTGTCTTGCT  300

seq1  CCCTGTGGTTTAGTCAGCCTGTTATCTTATACAACACAGGAACACCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGGTTTAGTCAGCCTGTTATCTTATACAACACAGGAACACCTGGC  350

seq1  CAGGGGTAGCACCACCTATGGTGGTCTGGGTCCTCCCAAACCACCTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTAGCACCACCTATGGTGGTCTGGGTCCTCCCAAACCACCTAATA  400

seq1  ATAAAGAAAATGTTACACAGACTTGCCTACAGGCCAATCTGATGAGGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAAATGTTACACAGACTTGCCTACAGGCCAATCTGATGAGGTAC  450

seq1  TCCCTCAACTGAAGTGCCTTCTGGATTACTGTAACTTGTGTCAAACGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAACTGAAGTGCCTTCTGGATTACTGTAACTTGTGTCAAACGGAC  500

seq1  AAACATGTGAATAAACAAAACCCCAAAATACAAATAAAACAGCAACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTGAATAAACAAAACCCCAAAATACAAATAAAACAGCAACAAAA  550

seq1  ATTAAAAACAAACCCACAACCCACAAACCAAACTCAGGACAAAGCTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAACAAACCCACAACCCACAAACCAAACTCAGGACAAAGCTAAAA  600

seq1  TCTCTTTATATAGATGTGTATGAAACATTACATATGGAACATGTCAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTATATAGATGTGTATGAAACATTACATATGGAACATGTCAAAAG  650

seq1  TTGTAAAAAATTTTATTTAAACCACAGTGTTTATTTTCCACAACATAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAAATTTTATTTAAACCACAGTGTTTATTTTCCACAACATAAAG  700

seq1  GTGAAATATTTTTGCATTTCCCAATGCATTTCTCAGTAATAACACAGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATATTTTTGCATTTCCCAATGCATTTCTCAGTAATAACACAGCCA  750

seq1  CTAAAAATATTTTTTGTTCATGTAGAGCAGTGTTAATATAGCTTAACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATATTTTTTGTTCATGTAGAGCAGTGTTAATATAGCTTAACAGA  800

seq1  AGAAAAGGCACATTATCTCCCAGAAGAAAGGAAGAAAGCCTTATTTGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGCACATTATCTCCCAGAAGAAAGGAAGAAAGCCTTATTTGTTA  850

seq1  TTAAAACGGAGCTGAAAATACAGCAATTATTATACTGCCCTTTCCCTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACGGAGCTGAAAATACAGCAATTATTATACTGCCCTTTCCCTAAT  900

seq1  TTGACTTAAATTAGTGATTT-GATGTTATTAGAGGATATGAAAT-ATACA  948
      |||||||||||||||||||| |||||||||||||| |||||||| |||||
seq2  TTGACTTAAATTAGTGATTTGGATGTTATTAGAGGTTATGAAATAATACA  950

seq1  GTAGGTGCACATAGGAGACAAAAATATTGCTTGCTCATATGTACGTTTAT  998
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  GTAGGTGCACATAGGAGACAAAATATTTGCTTGCTCATATGTACGTTTAT  1000

seq1  GACATTAATC-TATCTCTCAATGATCTAATATAAAACAAACCATTTGAAA  1047
      |||||||| | | |||||| ||||||| ||||||||| ||||||||||||
seq2  GACATTAACCTTTTCTCTC-ATGATCT-ATATAAAAC-AACCATTTGAAA  1047

seq1  GCAATTTCATTGAAATACTTTCAGAAATGTTGAAATGAAAATATTAATCT  1097
      || ||||||| ||||||| ||||| |||| |||| ||||   ||| ||| 
seq2  GC-ATTTCATGGAAATAC-TTCAG-AATG-TGAATTGAA---ATTTATC-  1089

seq1  TTCAGAAGTGTCATGTTGGTTTCTTTTTTTTTAATCCCAGAAAGATAGGT  1147
      ||||||   ||||||||||||||||||||||| ||||| ||||||| |||
seq2  TTCAGA--GGTCATGTTGGTTTCTTTTTTTTT-ATCCC-GAAAGAT-GGT  1134

seq1  TGAGGAGTACTGAAAATATAAA  1169
      |||||||||||| |||| ||||
seq2  TGAGGAGTACTGGAAAT-TAAA  1155

seq1: chr11_18131056_18131602
seq2: B6Ng01-129B08.g_71_617 (reverse)

seq1  TGATAGATGGAGGGGAGACCAGCTCACCGTAGGCAGCCCCATTCATAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGATGGAGGGGAGACCAGCTCACCGTAGGCAGCCCCATTCATAAGC  50

seq1  AGGTGGATGTAAAATAAAGTTATCTAGACATGAGCCAGGAGCAAGCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGATGTAAAATAAAGTTATCTAGACATGAGCCAGGAGCAAGCCTGT  100

seq1  AAACAGTAATCCTCCATGGTCTCAGATTCTGTTTCTGTTTGTATCCCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTAATCCTCCATGGTCTCAGATTCTGTTTCTGTTTGTATCCCTAC  150

seq1  CATGTCTTTCTTCAGTGACAGGTTTGTGACCTAGAAGTATAATCCAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTTTCTTCAGTGACAGGTTTGTGACCTAGAAGTATAATCCAAACA  200

seq1  AACCCTTTGCTTCTCAAGTTGCTTTGCTCATGGTATTTTTTTACAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTTGCTTCTCAAGTTGCTTTGCTCATGGTATTTTTTTACAGAAAG  250

seq1  AGGAAAACATACTAGAACACCTAGATTTTGAAAATGATGTTCACACTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAACATACTAGAACACCTAGATTTTGAAAATGATGTTCACACTTTC  300

seq1  ATATTAATTTGTCACTGTCATTGTCTGATGTTCTAGTTCTTCTACATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATTTGTCACTGTCATTGTCTGATGTTCTAGTTCTTCTACATTCA  350

seq1  TTTTTACTTTTTCAGACTCCCTTCTCCCCACTTCATTCTGTTGATGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTTTTTCAGACTCCCTTCTCCCCACTTCATTCTGTTGATGACAG  400

seq1  TTTCTTTATTTTACTTATTGAATTTTTTATTTCTGCTTTTCCTGTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTATTTTACTTATTGAATTTTTTATTTCTGCTTTTCCTGTTTCTT  450

seq1  CTTTCTCCATGGCCTCGTTTTCTTTACTGACCCCCACATTAATATTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCATGGCCTCGTTTTCTTTACTGACCCCCACATTAATATTCTAT  500

seq1  AGTTACTTCCTTATATTATTCAACTCTTTGTGCTTTGGGGGGAATTC  547
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTTCCTTATATTATTCAACTCTTTGTGCTTTGGGGGGAATTC  547