BAC Information

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BAC

Clone NameB6Ng01-129D03
Chromosome11 (Build37)
Map Location 52,244,278 - 52,413,513
singlet/doubletdoublet
Overlap geneLOC667659, LOC667667, LOC100040523
Upstream geneCol23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik
Downstream geneFstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500, Sept8, Cycl, Kif3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129D03.bB6Ng01-129D03.g
ACCDH930845DH930846
length772892
definitionDH930845|Mus musculus domesticus DNA, BAC clone: B6Ng01-129D03, 5' end.DH930846|Mus musculus domesticus DNA, BAC clone: B6Ng01-129D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,244,278 - 52,245,050)(52,412,631 - 52,413,513)
sequence
gaattcagtgagtctaatgtcccacatctttataagctccccagagattg
ctgtcccgtgtccccagcacggaacacagcttggcacacagtaggtgtgc
aacgagtgagggaagaaaatctaacaaagcataccctttcctagaaccag
aaacacacatcctacaactgcaaccctttcccaccttctagaaacatctg
gcaactggatccagccgaaggcagagagaagccagctgagagactgtgcc
atggtgcactgaggtcagagctgcgatgcttggagctctggtctttccca
ggcaggagtaggaaggcagaaggacggtggcagtgccacactttcatctc
atcagctgcccaagtgggctgcaggcatcagaagatagtcccaggttact
atagtggaggggtgagacctccccacttaagggcagtgtggtcctttcag
gttctaggagggatgctggaggccctaactggtgtcaggagatacatccc
tggaaagggatgcatttgcctgagcatccctgagcctttcttaaggagtc
caggttttgcgttaaagtaataactacgcaattcaggtcgcaaccagagt
gctagaacattggctcccaggggacacgctaccgagcccgaggggacggg
tgtgtctacctggggtcactaagagtgccataggcttccagggctaggat
gcctgtgtgtgggagcccagggctgggtgagaaggagaaaaaaggaggag
attagggtgggagatagaggag
gaattccacatatgcttataaacacttccattacttctgaagttttattt
atggtttttgttaaacctttactctgaagtttgccattttaaacactccc
tgactgaaagagatttatatgggtctctcacactgaagccacctgaaatg
gacagagccgaaatcaatttatagggcttcaagagcggttgacgattcat
ttttattgagagagggtttctctcaggaaggggagagaaaacattaccgc
ctccagaacacatccactcctttaacagtctgactgttgctaggtaccgt
ctctgtctccccgtcaatacaagcactatgaaactgtatcaaagcatgct
gtttgccagactagagatgaaaataaaggtttcagaccccgcagaagagg
tcctggcttctcggggtgctcaggagaaatgagcgctacaactgaacctg
ttgattcaaagggaatcaggaaccagcaatgacaagagttgggagcctca
caaatcctttgagtatcctaaagcccccagccgaagggagcaacaactca
catattttcaggcctgtcaaataaattaggaactctcttcctttgaagat
caatggtatagagatgactttgaactcttaatatcaggcattagcaacat
aatgttgggtttattaagaatgaaaggaatttaccaattttctcccagcg
atcctctctggactctgcacggaagctaatcactagataattgttcaatg
gctcttctggtccattcaaatctattgaattgtttagagagggaaggcag
aagtccccttgagggaccaattaccaattgcagggacctgcacttggcag
aacacatttttggaaattaaaaatatacaaaaataaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_52244278_52245050
seq2: B6Ng01-129D03.b_48_819

seq1  GAATTCAGTGAGTCTAATGTCCCACATCTTTATAAGCTCCCCAGAGATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAGTCTAATGTCCCACATCTTTATAAGCTCCCCAGAGATTG  50

seq1  CTGTCCCGTGTCCCCAGCACGGAACACAGCTTGGCACACAGTAGGTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCGTGTCCCCAGCACGGAACACAGCTTGGCACACAGTAGGTGTGC  100

seq1  AACGAGTGAGGGAAGAAAATCTAACAAAGCATACCCTTTCCTAGAACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGTGAGGGAAGAAAATCTAACAAAGCATACCCTTTCCTAGAACCAG  150

seq1  AAACACACATCCTACAACTGCAACCCTTTCCCACCTTCTAGAAACATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACATCCTACAACTGCAACCCTTTCCCACCTTCTAGAAACATCTG  200

seq1  GCAACTGGATCCAGCCGAAGGCAGAGAGAAGCCAGCTGAGAGACTGTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGGATCCAGCCGAAGGCAGAGAGAAGCCAGCTGAGAGACTGTGCC  250

seq1  ATGGTGCACTGAGGTCAGAGCTGCGATGCTTGGAGCTCTGGTCTTTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCACTGAGGTCAGAGCTGCGATGCTTGGAGCTCTGGTCTTTCCCA  300

seq1  GGCAGGAGTAGGAAGGCAGAAGGACGGTGGCAGTGCCACACTTTCATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAGTAGGAAGGCAGAAGGACGGTGGCAGTGCCACACTTTCATCTC  350

seq1  ATCAGCTGCCCAAGTGGGCTGCAGGCATCAGAAGATAGTCCCAGGTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTGCCCAAGTGGGCTGCAGGCATCAGAAGATAGTCCCAGGTTACT  400

seq1  ATAGTGGAGGGGTGAGACCTCCCCACTTAAGGGCAGTGTGGTCCTTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGAGGGGTGAGACCTCCCCACTTAAGGGCAGTGTGGTCCTTTCAG  450

seq1  GTTCTAGGAGGGATGCTGGAGGCCCTAACTGGTGTCAGGAGATACATCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAGGAGGGATGCTGGAGGCCCTAACTGGTGTCAGGAGATACATCCC  500

seq1  TGGAAAGGGATGCATTTGCCTGAGCATCCCTGAGCCTTTCTTAAGGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGGGATGCATTTGCCTGAGCATCCCTGAGCCTTTCTTAAGGAGTC  550

seq1  CAGGTTTTGCGTTAAAGTAATAACTACGCAATTCAGGTCGCAACCAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTTGCGTTAAAGTAATAACTACGCAATTCAGGTCGCAACCAGAGT  600

seq1  GCTAGAACATTGGCTCCCAGGGGACACGCTACCGAGCCCGAGGGGACGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAACATTGGCTCCCAGGGGACACGCTACCGAGCCCGAGGGGACGGG  650

seq1  TGTGTCTACCTGGGGTCACTAAGAGTGCCATAGGCTTCCAGGGCTAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTACCTGGGGTCACTAAGAGTGCCATAGGCTTCCAGGGCTAGGAT  700

seq1  GCCTGTGTGTGGGAGCCCAGGGCTGGGTGAGAAGGAGAAAAAAGGAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTGTGGGAGCCCAGGGCTGGGTGAGAAGGAGAAAAAAGGAGGAG  750

seq1  ATTAGGGTGGGAGATAGGAGGAG  773
      |||||||||||||||| ||||||
seq2  ATTAGGGTGGGAGATA-GAGGAG  772

seq1: chr11_52412631_52413513
seq2: B6Ng01-129D03.g_65_956 (reverse)

seq1  -TTTTTTTTTTTTT------------TTTCTAAAAATGTGTTCTGCCAAG  37
       ||||||| |||||            |||| |||||||||||||||||||
seq2  TTTTTTTTATTTTTGTATATTTTTAATTTCCAAAAATGTGTTCTGCCAAG  50

seq1  TTGCAGGTCCCTGCATTTTGGTAATTGGTCCCTCAAGGGGACTTCTGCCT  87
       ||||||||||||||  |||||||||||||||||||||||||||||||| 
seq2  -TGCAGGTCCCTGCA-ATTGGTAATTGGTCCCTCAAGGGGACTTCTGCC-  97

seq1  TTCCCTCTCTAAACAATTCAATAGATTTGAATGGACCAGAAGAGCCATTG  137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTCTAAACAATTCAATAGATTTGAATGGACCAGAAGAGCCATTG  147

seq1  AACAATTATCTAGTGATTAGCTTCCGTGCAGAGTCCAGAGAGGATCGCTG  187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTATCTAGTGATTAGCTTCCGTGCAGAGTCCAGAGAGGATCGCTG  197

seq1  GGAGAAAATTGGTAAATTCCTTTCATTCTTAATAAAACCCAACATTATGT  237
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGAGAAAATTGGTAAATTCCTTTCATTCTTAAT-AAACCCAACATTATGT  246

seq1  TGCTAATGCCTGATATTAAGAGTTCAAAGTCATCTCTATACCATTGATCT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATGCCTGATATTAAGAGTTCAAAGTCATCTCTATACCATTGATCT  296

seq1  TCAAAGGAAGAGAGTTCCTAATTTATTTGACAGGCCTGAAAATATGTGAG  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGAAGAGAGTTCCTAATTTATTTGACAGGCCTGAAAATATGTGAG  346

seq1  TTGTTGCTCCCTTCGGCTGGGGGCTTTAGGATACTCAAAGGATTTGTGAG  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTCCCTTCGGCTGGGGGCTTTAGGATACTCAAAGGATTTGTGAG  396

seq1  GCTCCCAACTCTTGTCATTGCTGGTTCCTGATTCCCTTTGAATCAACAGG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAACTCTTGTCATTGCTGGTTCCTGATTCCCTTTGAATCAACAGG  446

seq1  TTCAGTTGTAGCGCTCATTTCTCCTGAGCACCCCGAGAAGCCAGGACCTC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTGTAGCGCTCATTTCTCCTGAGCACCCCGAGAAGCCAGGACCTC  496

seq1  TTCTGCGGGGTCTGAAACCTTTATTTTCATCTCTAGTCTGGCAAACAGCA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCGGGGTCTGAAACCTTTATTTTCATCTCTAGTCTGGCAAACAGCA  546

seq1  TGCTTTGATACAGTTTCATAGTGCTTGTATTGACGGGGAGACAGAGACGG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGATACAGTTTCATAGTGCTTGTATTGACGGGGAGACAGAGACGG  596

seq1  TACCTAGCAACAGTCAGACTGTTAAAGGAGTGGATGTGTTCTGGAGGCGG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAGCAACAGTCAGACTGTTAAAGGAGTGGATGTGTTCTGGAGGCGG  646

seq1  TAATGTTTTCTCTCCCCTTCCTGAGAGAAACCCTCTCTCAATAAAAATGA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTTCTCTCCCCTTCCTGAGAGAAACCCTCTCTCAATAAAAATGA  696

seq1  ATCGTCAACCGCTCTTGAAGCCCTATAAATTGATTTCGGCTCTGTCCATT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCAACCGCTCTTGAAGCCCTATAAATTGATTTCGGCTCTGTCCATT  746

seq1  TCAGGTGGCTTCAGTGTGAGAGACCCATATAAATCTCTTTCAGTCAGGGA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGGCTTCAGTGTGAGAGACCCATATAAATCTCTTTCAGTCAGGGA  796

seq1  GTGTTTAAAATGGCAAACTTCAGAGTAAAGGTTTAACAAAAACCATAAAT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAAAATGGCAAACTTCAGAGTAAAGGTTTAACAAAAACCATAAAT  846

seq1  AAAACTTCAGAAGTAATGGAAGTGTTTATAAGCATCTGTGGAATTC  883
      ||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAACTTCAGAAGTAATGGAAGTGTTTATAAGCATATGTGGAATTC  892