BAC Information

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BAC

Clone NameB6Ng01-129D24
Chromosome11 (Build37)
Map Location 39,439,393 - 39,547,730
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129D24.bB6Ng01-129D24.g
ACCDH930886DH930887
length1,1381,059
definitionDH930886|Mus musculus domesticus DNA, BAC clone: B6Ng01-129D24, 5' end.DH930887|Mus musculus domesticus DNA, BAC clone: B6Ng01-129D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,439,393 - 39,440,543)(39,546,659 - 39,547,730)
sequence
gaattccagtggcatccatgtttaccccgtggcccctgcatgaattgttt
gtgatgaggttggtgtgagcaaacctactataaatctaaagaatatagtt
gtatcaggtgcatgatacttgatagtgttaactatttcagatttatgtat
tttctgtttttatcattatttcagggcatactcctgcttattaagatatt
attctataaaaaacagtatagcaaataaagagatactaacttccaatatt
tcctgtcaaactatctcaatgttgaatcaaaactacatccagaggtgaaa
ctgaagccttcatggtggctcaagtttgctcttatgaattcacatgagga
tgaaatcaactaatgacacaaatttcagagtgcattctcttccttaaata
gagcattactgtaaaacagaacctaaggtttgaaagaaaaaagttgggag
aaggccacatctattttagtaaatgactcattactccaacataattggaa
actttcatggaatttacaccatattgaaatcaagagcctgaagtactata
aaaatgagcttgtatatttaggtaaattactccaatttgttatttaataa
aatcagccactcttgccatggagctgacatagtgaaaataaaaaacccta
tggttcatcaacacctccatagcttccagtctaatggtaacagttagatt
ataaatgaaattaccatataaataactgcatcgttaatgactgggtaaga
actccaagtcaaaatcatatgactaatagaggatataataaagaaggctg
caacatgcttggaggaggccaggtgagggtaatctcatgcaataatgctg
gaaacaaaggtaaaatacaatgtgaagaagaggagtaaagtattttttaa
aaaggagattagaatagtcaagacttgaatataaactttatttaagtgta
taaatatattttcaaatagttataaatttcaatttttctaatgctgaagt
aaatttcatttaaaatagagaacaagtggaatttctttgttattctatgc
aatagggcatttgaattagtagtagactttggtgtgacttgccgacggcc
ccagtgccagaggactctccacacccagtgtctagcac
gaattcaaaaaggatgaactaagccaacctctgaaaaaaaaacagaagga
ttaaaaactgacttcgtggtcttcctatgagctttgagtcacaccaacat
tagatttcctgctcgatccataaattatcatctaatataaatgtatgaca
aaacaaattagtgtaaatggacatcatgtcgttctaaaggaggctggcaa
aggactcatagccaatcttgcaagtttgaaaacactagttattttgcgag
agcctgttgttttcgtgtaattcagcgacagtttagcatcggtacccact
gctggccttatgttcctgcatctgctgtgtgaagaaaacatttttccctt
aaagtagcatccaccatgctaattgttctcactcccggttcacggtaagc
ataagatgagcgacttgtcgatcaaggcatgtacaggaactcatttgact
ttggcaaccgctgcctttttccgcggattcaaagggtttgtagctctagg
acactgagatcaccttccatgggtagtagttgcctcaattaaatctaaca
caaactgcatttatacagcactaaatgaagcagctgaactgtggagtgct
ccatcaactgtcgctttagcctacatgacaggagtgtaactagctacatt
gaaaactatttgttatttctttgggtgtcattggcacaccattattaaga
gacatctgccatatttctttaagtattttgcctcgctttcttggaaacta
tacagttagaatattttaccagctccgttgtcagtccttaacctgagcag
caagctgctttgcagctttgtttattggcagataattgagaaaacactct
tagctgctggtaagcccagttctggtgttcggatgtgatatcaaagttga
cttcattcctgtgacacgggctgagttttctgatggacacatgtcatcac
ttgggaaatattgtactttatgaaaaaacatcacatcagcagaatctata
atgctttatttctccactagaatgctggttaacaccccccaagaacattt
cagtgtcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_39439393_39440543
seq2: B6Ng01-129D24.b_48_1185

seq1  GAATTCCAGTGGCATCCATGTTTACCCCGTGGCCCCTGCATGAATTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGGCATCCATGTTTACCCCGTGGCCCCTGCATGAATTGTTT  50

seq1  GTGATGAGGTTGGTGTGAGCAAACCTACTATAAATCTAAAGAATATAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAGGTTGGTGTGAGCAAACCTACTATAAATCTAAAGAATATAGTT  100

seq1  GTATCAGGTGCATGATACTTGATAGTGTTAACTATTTCAGATTTATGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGGTGCATGATACTTGATAGTGTTAACTATTTCAGATTTATGTAT  150

seq1  TTTCTGTTTTTATCATTATTTCAGGGCATACTCCTGCTTATTAAGATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTTTTATCATTATTTCAGGGCATACTCCTGCTTATTAAGATATT  200

seq1  ATTCTATAAAAAACAGTATAGCAAATAAAGAGATACTAACTTCCAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATAAAAAACAGTATAGCAAATAAAGAGATACTAACTTCCAATATT  250

seq1  TCCTGTCAAACTATCTCAATGTTGAATCAAAACTACATCCAGAGGTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCAAACTATCTCAATGTTGAATCAAAACTACATCCAGAGGTGAAA  300

seq1  CTGAAGCCTTCATGGTGGCTCAAGTTTGCTCTTATGAATTCACATGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCCTTCATGGTGGCTCAAGTTTGCTCTTATGAATTCACATGAGGA  350

seq1  TGAAATCAACTAATGACACAAATTTCAGAGTGCATTCTCTTCCTTAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCAACTAATGACACAAATTTCAGAGTGCATTCTCTTCCTTAAATA  400

seq1  GAGCATTACTGTAAAACAGAACCTAAGGTTTGAAAGAAAAAAGTTGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTACTGTAAAACAGAACCTAAGGTTTGAAAGAAAAAAGTTGGGAG  450

seq1  AAGGCCACATCTATTTTAGTAAATGACTCATTACTCCAACATAATTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCACATCTATTTTAGTAAATGACTCATTACTCCAACATAATTGGAA  500

seq1  ACTTTCATGGAATTTACACCATATTGAAATCAAGAGCCTGAAGTACTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCATGGAATTTACACCATATTGAAATCAAGAGCCTGAAGTACTATA  550

seq1  AAAATGAGCTTGTATATTTAGGTAAATTACTCCAATTTGTTATTTAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGCTTGTATATTTAGGTAAATTACTCCAATTTGTTATTTAATAA  600

seq1  AATCAGCCACTCTTGCCATGGAGCTGACATAGTGAAAATAAAAAACCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCCACTCTTGCCATGGAGCTGACATAGTGAAAATAAAAAACCCTA  650

seq1  TGGTTCATCAACACCTCCATAGCTTCCAGTCTAATGGTAACAGTTAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATCAACACCTCCATAGCTTCCAGTCTAATGGTAACAGTTAGATT  700

seq1  ATAAATGAAATTACCATATAAATAACTGCATCGTTAATGACTGGGTAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAAATTACCATATAAATAACTGCATCGTTAATGACTGGGTAAGA  750

seq1  ACTCCAAGTCAAAATCATATGACTAATAGAGGATATAATAAAGAAGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAGTCAAAATCATATGACTAATAGAGGATATAATAAAGAAGGCTG  800

seq1  CAACATGCTTGGAGGAGGCCAGGTGAGGGTAATCTCATGCAATAATGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGCTTGGAGGAGGCCAGGTGAGGGTAATCTCATGCAATAATGCTG  850

seq1  GAAACAAAGGTAAAATACAATGTGAAGAAGAGGAGTAAAGTATTTTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAACAAAGGTAAAATACAATGTGAAGAAGAGGAGTAAAGTATTTTTTAA  900

seq1  AAAGGAGAATAGAATAGTCAAGACTTGAATATAAACTTTATTTAAAGTGT  950
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  AAAGGAGATTAGAATAGTCAAGACTTGAATATAAACTTTATTT-AAGTGT  949

seq1  ATAAATATA-TTTCAAATAGTTATAAATTTCAA-TTTTCTAATGCTGAAG  998
      ||||||||| ||||||||||||||||||||||| ||||||||||||||||
seq2  ATAAATATATTTTCAAATAGTTATAAATTTCAATTTTTCTAATGCTGAAG  999

seq1  TAAAATTTCATTTAAAATAGAGAACATAGTGG-ATTTCTTTGTTATTCTA  1047
      | |||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  T-AAATTTCATTTAAAATAGAGAACA-AGTGGAATTTCTTTGTTATTCTA  1047

seq1  TTGCAAATTAGGGCATTTGAAATAAGTAGGTAGACCTTGGTGTGAACTTG  1097
       |||||  ||||||||||| ||| |||| |||||| |||||||| |||| 
seq2  -TGCAA--TAGGGCATTTG-AATTAGTA-GTAGACTTTGGTGTG-ACTT-  1090

seq1  GCGGACGAGCCCACAGTGCCCAGAGGACTCTCCACACCCCAGGTGTCCTA  1147
      || |||| |||| ||||| ||||||||||||||||||||   |||| |||
seq2  GCCGACG-GCCC-CAGTG-CCAGAGGACTCTCCACACCC--AGTGT-CTA  1134

seq1  GCAC  1151
      ||||
seq2  GCAC  1138

seq1: chr11_39546659_39547730
seq2: B6Ng01-129D24.g_68_1126 (reverse)

seq1  TAGACAACCTGAAATGTTCTTGGTGAGTGTTAACCAGCA-TCTAAGTGAG  49
      ||||||  ||||||||||||||| | ||||||||||||| ||||   |||
seq2  TAGACA--CTGAAATGTTCTTGGGGGGTGTTAACCAGCATTCTAGTGGAG  48

seq1  AAATAAAGCAATTTATTAGTATCTGCTGGATGTGATGTTTTTTTCCATAA  99
      ||||||||||  ||| |||  |||||| |||||||||||||||  ||| |
seq2  AAATAAAGCA--TTA-TAGATTCTGCT-GATGTGATGTTTTTT--CAT-A  91

seq1  AAGTACCAATATTTCCCAAAGTGATGACATGTTGTCCAATCAGGAAAACT  149
      ||||| ||||||||||| ||||||||||||| ||||| |||| |||||||
seq2  AAGTA-CAATATTTCCC-AAGTGATGACATG-TGTCC-ATCA-GAAAACT  136

seq1  CAGCCCGTGTCACAGGAATGAAGTCAACTTTGATATCACATCCGAACACC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCGTGTCACAGGAATGAAGTCAACTTTGATATCACATCCGAACACC  186

seq1  AGAACTGGGCTTACCAGCAGCTAAGAGTGTTTTCTCAATTATCTGCCAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGGCTTACCAGCAGCTAAGAGTGTTTTCTCAATTATCTGCCAAT  236

seq1  AAACAAAGCTGCAAAGCAGCTTGCTGCTCAGGTTAAGGACTGACAACGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGCTGCAAAGCAGCTTGCTGCTCAGGTTAAGGACTGACAACGGA  286

seq1  GCTGGTAAAATATTCTAACTGTATAGTTTCCAAGAAAGCGAGGCAAAATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTAAAATATTCTAACTGTATAGTTTCCAAGAAAGCGAGGCAAAATA  336

seq1  CTTAAAGAAATATGGCAGATGTCTCTTAATAATGGTGTGCCAATGACACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGAAATATGGCAGATGTCTCTTAATAATGGTGTGCCAATGACACC  386

seq1  CAAAGAAATAACAAATAGTTTTCAATGTAGCTAGTTACACTCCTGTCATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAATAACAAATAGTTTTCAATGTAGCTAGTTACACTCCTGTCATG  436

seq1  TAGGCTAAAGCGACAGTTGATGGAGCACTCCACAGTTCAGCTGCTTCATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTAAAGCGACAGTTGATGGAGCACTCCACAGTTCAGCTGCTTCATT  486

seq1  TAGTGCTGTATAAATGCAGTTTGTGTTAGATTTAATTGAGGCAACTACTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTGTATAAATGCAGTTTGTGTTAGATTTAATTGAGGCAACTACTA  536

seq1  CCCATGGAAGGTGATCTCAGTGTCCTAGAGCTACAAACCCTTTGAATCCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGAAGGTGATCTCAGTGTCCTAGAGCTACAAACCCTTTGAATCCG  586

seq1  CGGAAAAAGGCAGCGGTTGCCAAAGTCAAATGAGTTCCTGTACATGCCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAAAGGCAGCGGTTGCCAAAGTCAAATGAGTTCCTGTACATGCCTT  636

seq1  GATCGACAAGTCGCTCATCTTATGCTTACCGTGAACCGGGAGTGAGAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGACAAGTCGCTCATCTTATGCTTACCGTGAACCGGGAGTGAGAACA  686

seq1  ATTAGCATGGTGGATGCTACTTTAAGGGAAAAATGTTTTCTTCACACAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATGGTGGATGCTACTTTAAGGGAAAAATGTTTTCTTCACACAGC  736

seq1  AGATGCAGGAACATAAGGCCAGCAGTGGGTACCGATGCTAAACTGTCGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGGAACATAAGGCCAGCAGTGGGTACCGATGCTAAACTGTCGCT  786

seq1  GAATTACACGAAAACAACAGGCTCTCGCAAAATAACTAGTGTTTTCAAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACACGAAAACAACAGGCTCTCGCAAAATAACTAGTGTTTTCAAAC  836

seq1  TTGCAAGATTGGCTATGAGTCCTTTGCCAGCCTCCTTTAGAACGACATGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGATTGGCTATGAGTCCTTTGCCAGCCTCCTTTAGAACGACATGA  886

seq1  TGTCCATTTACACTAATTTGTTTTGTCATACATTTATATTAGATGATAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATTTACACTAATTTGTTTTGTCATACATTTATATTAGATGATAAT  936

seq1  TTATGGATCGAGCAGGAAATCTAATGTTGGTGTGACTCAAAGCTCATAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGATCGAGCAGGAAATCTAATGTTGGTGTGACTCAAAGCTCATAGG  986

seq1  AAGACCACGAAGTCAGTTTTTAATCCTTCTGTTTTTTTTTCAGAGGTTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCACGAAGTCAGTTTTTAATCCTTCTGTTTTTTTTTCAGAGGTTGG  1036

seq1  CTTAGTTCATCCTTTTTGAATTC  1072
      |||||||||||||||||||||||
seq2  CTTAGTTCATCCTTTTTGAATTC  1059