BAC Information

Click to search

BAC

Clone NameB6Ng01-129L10
Chromosome11 (Build37)
Map Location 51,745,073 - 51,830,256
singlet/doubletdoublet
Overlap geneD11Ertd497e, Ube2b, Cdkl3
Upstream geneProp1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15
Downstream geneLOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129L10.bB6Ng01-129L10.g
ACCDH931225DH931226
length6391,102
definitionDH931225|Mus musculus domesticus DNA, BAC clone: B6Ng01-129L10, 5' end.DH931226|Mus musculus domesticus DNA, BAC clone: B6Ng01-129L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,745,073 - 51,745,709)(51,829,141 - 51,830,256)
sequence
gaattcactatgtaaactcacagaaatccacctgcctctgcctctccagt
gatgagattaaaggtgcgcacaccacacccagcctcctcccctcttcctc
tttttagtatattttaattaatccgttgagaatttcatatagtgtattat
tatcatagtcaccctaactccttcctccacactcccaccccaccccaccc
ccaactttgtatccgctattttaaaataatccactgagtccagtttgtgc
tgcctggatcgtcctccgtgtggggcatcctcgtctggagtgtgcaggac
gcagtaggcaaccacatcctcaaagaaaactgacacttcctccctcagaa
gccacagccattacttcatgcttaggggtggggacttgtgatcctcttcc
tcctctgtgctaaagagtcactgacttgaccttgtgtagggattacataa
ccacagcttctccaagttcacgagtgccttgcctttttccccttcacatt
tcttctaggggggaggggaggtgtgggaagctacatgtgccgttgcaagg
tggcgctggcttccgctggccaccacgcatacataggcagtaaagttttt
ttttttgtttttttttttttttttgtaagatgatgtttt
gaattccaagacacccagacagaaagatcctgccacacacacacacacac
acacacacacacacacacacacacacacacaccaaaataaaagcaaaaca
aaaagcccaccaaggaatgactctcttacctcttgtcatttttacaaaaa
ggatttaaaatgtactcttagcaattttaaataacacaatagtcagtaac
tgtagttacaacactgcaaaaataatcttttgagccaggtgctggtggta
tatgttgcaggatatttgatcacacttggaggaagcacccaagtttgaaa
gtgctgtctaattgagtggcagccaaagtcaggaaccagagaaagctttg
acagagcaggatatgcccaactctcaggagaacagagaataaagaggctt
ctgaagagagatgagaaagcagttttatcggggaagtttcacagagatgg
actggacagagaacaggctagacacaggtgagacagaacaagctagggaa
tgagaaggagctagaagattagaacagattaccaaagttaatatgaggcc
aagcagagcaaaaagtcagagccagagaaagaagccagaccgagtcagtc
agcttggagaggaatttgagccagaagagctgagttgaaccagccagagc
tcagaaagaacttgaaagggtgagcaacagcaagtctcagaagctgagga
ccttctaggtatatgttagcacactcagtctgcaagcctcagagagaaca
agtctcagaggctgaggaccttctaggtatatgttagcacactcagtctg
caagcctcagagagaacaagtctcagaggctgaggacattctaggtatat
gttagcacactcagtctgcaagctcagagagaacagtctcagaggctgaa
ggacattctagtatatgtagcacactcagtctgcaggctcggagagaaca
gtctcagaggctgagacattctaggtatatgttagcacactcagtctgca
gcctcagagagaacagtctcgaggctgagacttctagtatattgttagca
ccctcatctgcagcctcagagagaacagtctcgaggctgaggacttctag
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_51745073_51745709
seq2: B6Ng01-129L10.b_50_688

seq1  GAATTCACTATGTAAACTCACAGAAATCCACCTGCCTCTGCCTCTCCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAAACTCACAGAAATCCACCTGCCTCTGCCTCTCCAGT  50

seq1  GATGAGATTAAAGGTGCGCACACCACACCCAGCCTCCTCCCCTCTTCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGATTAAAGGTGCGCACACCACACCCAGCCTCCTCCCCTCTTCCTC  100

seq1  TTTTTAGTATATTTTAATTAATCCGTTGAGAATTTCATATAGTGTATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTATATTTTAATTAATCCGTTGAGAATTTCATATAGTGTATTAT  150

seq1  TATCATAGTCACCCTAACTCCTTCCTCCACACTCCCACCCCACCCCACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAGTCACCCTAACTCCTTCCTCCACACTCCCACCCCACCCCACCC  200

seq1  CCAACTTTGTATCCGCTATTTTAAAATAATCCACTGAGTCCAGTTTGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTTGTATCCGCTATTTTAAAATAATCCACTGAGTCCAGTTTGTGC  250

seq1  TGCCTGGATCGTCCTCCGTGTGGGGCATCCTCGTCTGGAGTGTGCAGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGATCGTCCTCCGTGTGGGGCATCCTCGTCTGGAGTGTGCAGGAC  300

seq1  GCAGTAGGCAACCACATCCTCAAAGAAAACTGACACTTCCTCCCTCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGGCAACCACATCCTCAAAGAAAACTGACACTTCCTCCCTCAGAA  350

seq1  GCCACAGCCATTACTTCATGCTTAGGGGTGGGGACTTGTGATCCTCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGCCATTACTTCATGCTTAGGGGTGGGGACTTGTGATCCTCTTCC  400

seq1  TCCTCTGTGCTAAAGAGTCACTGACTTGACCTTGTGTAGGGATTACATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTGCTAAAGAGTCACTGACTTGACCTTGTGTAGGGATTACATAA  450

seq1  CCACAGCTTCTCCAAGTTCACGAGTGCCTTGCCTTTTTCCCCTTCACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTTCTCCAAGTTCACGAGTGCCTTGCCTTTTTCCCCTTCACATT  500

seq1  TCTTCTAGGGGGGAGGGGAGGTGTGGGAAGCTACATGTGCCGTTGCAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAGGGGGGAGGGGAGGTGTGGGAAGCTACATGTGCCGTTGCAAGG  550

seq1  TGGCGCTGGCTTCCGCTGGCCACCACGCATACATAGGCAGTAAAG--TTT  598
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  TGGCGCTGGCTTCCGCTGGCCACCACGCATACATAGGCAGTAAAGTTTTT  600

seq1  TTTTTTGTTTTTTTTTTTTTTTTGCCAAGATGAGGTTTT  637
      |||||||||||||||||||||||   ||||||| |||||
seq2  TTTTTTGTTTTTTTTTTTTTTTTTGTAAGATGATGTTTT  639

seq1: chr11_51829141_51830256
seq2: B6Ng01-129L10.g_68_1169 (reverse)

seq1  ACCTAGAAGGTCCTCAGCCTCTGAGACTTGTTCTCTCTGAGGCTTGCAGA  50
      |||||||| |||||||||||| ||||| ||||||||||||||| ||||||
seq2  ACCTAGAA-GTCCTCAGCCTC-GAGAC-TGTTCTCTCTGAGGC-TGCAGA  46

seq1  CTGAGTGTGCTAAC-ATATACCTAGAAGGTCCTCAGCCTCTGAGACTTGT  99
       |||| |||||||| ||||| |||||||   ||||||||| ||||| |||
seq2  -TGAGGGTGCTAACAATATA-CTAGAAG--TCTCAGCCTC-GAGAC-TGT  90

seq1  TCTCTCTGAGGCTTGCAGACTGAGTGTGCTAACATATACCTAGAATGTCC  149
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  TCTCTCTGAGGC-TGCAGACTGAGTGTGCTAACATATACCTAGAATGT-C  138

seq1  TCAGCCTCTGAGACTTGTTCTCTCCGAGCTTGCAGACTGAGTGTGCTAAC  199
      |||||||||||||| |||||||||||||| ||||||||||||||||| ||
seq2  TCAGCCTCTGAGAC-TGTTCTCTCCGAGCCTGCAGACTGAGTGTGCT-AC  186

seq1  ATATACCTAGAATGTCC-TCAGCCTCTGAGACTTGTTCTCTCTGAGCTTG  248
      ||||| ||||||||||| |||||||||||||| |||||||||||||||||
seq2  ATATA-CTAGAATGTCCTTCAGCCTCTGAGAC-TGTTCTCTCTGAGCTTG  234

seq1  CAGACTGAGTGTGCTAACATATACCTAGAATGTCCTCAGCCTCTGAGACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGAGTGTGCTAACATATACCTAGAATGTCCTCAGCCTCTGAGACT  284

seq1  TGTTCTCTCTGAGGCTTGCAGACTGAGTGTGCTAACATATACCTAGAAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTCTGAGGCTTGCAGACTGAGTGTGCTAACATATACCTAGAAGG  334

seq1  TCCTCAGCCTCTGAGACTTGTTCTCTCTGAGGCTTGCAGACTGAGTGTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCCTCTGAGACTTGTTCTCTCTGAGGCTTGCAGACTGAGTGTGC  384

seq1  TAACATATACCTAGAAGGTCCTCAGCTTCTGAGACTTGCTGTTGCTCACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATATACCTAGAAGGTCCTCAGCTTCTGAGACTTGCTGTTGCTCACC  434

seq1  CTTTCAAGTTCTTTCTGAGCTCTGGCTGGTTCAACTCAGCTCTTCTGGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGTTCTTTCTGAGCTCTGGCTGGTTCAACTCAGCTCTTCTGGCT  484

seq1  CAAATTCCTCTCCAAGCTGACTGACTCGGTCTGGCTTCTTTCTCTGGCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCCTCTCCAAGCTGACTGACTCGGTCTGGCTTCTTTCTCTGGCTC  534

seq1  TGACTTTTTGCTCTGCTTGGCCTCATATTAACTTTGGTAATCTGTTCTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTTGCTCTGCTTGGCCTCATATTAACTTTGGTAATCTGTTCTAA  584

seq1  TCTTCTAGCTCCTTCTCATTCCCTAGCTTGTTCTGTCTCACCTGTGTCTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAGCTCCTTCTCATTCCCTAGCTTGTTCTGTCTCACCTGTGTCTA  634

seq1  GCCTGTTCTCTGTCCAGTCCATCTCTGTGAAACTTCCCCGATAAAACTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTCTCTGTCCAGTCCATCTCTGTGAAACTTCCCCGATAAAACTGC  684

seq1  TTTCTCATCTCTCTTCAGAAGCCTCTTTATTCTCTGTTCTCCTGAGAGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATCTCTCTTCAGAAGCCTCTTTATTCTCTGTTCTCCTGAGAGTT  734

seq1  GGGCATATCCTGCTCTGTCAAAGCTTTCTCTGGTTCCTGACTTTGGCTGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATATCCTGCTCTGTCAAAGCTTTCTCTGGTTCCTGACTTTGGCTGC  784

seq1  CACTCAATTAGACAGCACTTTCAAACTTGGGTGCTTCCTCCAAGTGTGAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAATTAGACAGCACTTTCAAACTTGGGTGCTTCCTCCAAGTGTGAT  834

seq1  CAAATATCCTGCAACATATACCACCAGCACCTGGCTCAAAAGATTATTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATCCTGCAACATATACCACCAGCACCTGGCTCAAAAGATTATTTT  884

seq1  TGCAGTGTTGTAACTACAGTTACTGACTATTGTGTTATTTAAAATTGCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTTGTAACTACAGTTACTGACTATTGTGTTATTTAAAATTGCTA  934

seq1  AGAGTACATTTTAAATCCTTTTTGTAAAAATGACAAGAGGTAAGAGAGTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACATTTTAAATCCTTTTTGTAAAAATGACAAGAGGTAAGAGAGTC  984

seq1  ATTCCTTGGTGGGCTTTTTGTTTTGCTTTTATTTTGGTGTGTGTGTGTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGGTGGGCTTTTTGTTTTGCTTTTATTTTGGTGTGTGTGTGTGT  1034

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCAGGATCTTTCTGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCAGGATCTTTCTGT  1084

seq1  CTGGGTGTCTTGGAATTC  1116
      ||||||||||||||||||
seq2  CTGGGTGTCTTGGAATTC  1102